Alignment Contig 5831

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF049F09+ TTTAATTTCTAATGATGGATTTGTAAAGAGAATCTCTTCCAAAAGTCAAATCCTCATACT
rJMFF047E24+ AAAGTCAAATCCTCATACT
rJMSF005J07+ AAAGTCAAATCCTCATACT
____________________________________________________________
consensus TTTAATTTCTAATGATGGATTTGTAAAGAGAATCTCTTCCAAAAGTCAAATCCTCATACT

. : . : . : . : . : . :
rJMSF049F09+ TCATAGAGTTCAGTCATAATATATTTTTCAAAAAACTACACAACCTTAGCAAGGTCAACT
rJMFF047E24+ TCATAGAGTTCAGTCATAATATATTTTTCAAAAAACTACACAACCTTAGCAAGGTCAACT
rJMSF005J07+ TCATAGAGTTCAGTCATAATATATTTTTCAAAAAACTACACAACCTTAGCAAGGTCAACT
rJMFF031K13+ TAGAGTTCAGTCATAATATATTTTTCAAAAAACTACACAACCTTAGCAAGGTCAACT
rJMSF044B11+ TATATTTTTCAAAAAACTACACAACCTTAGCAAGGTCAACT
rJMSF051G24+ GAGTTCAGTCATAATATATTTTTCAAAAAACTACACAACCTTAGCAAGGTCAACT
rJMSF016M02+ AAAAACTACACAACCTTAGCAAGGTCAACT
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consensus TCATAGAGTTCAGTCATAATATATTTTTCAAAAAACTACACAACCTTAGCAAGGTCAACT

. : . : . : . : . : . :
rJMSF049F09+ AAGAAGGCAAGAATAATGATCACGGATCAAGCAACTTTGAACGTGGGTGACTAAAGAAGT
rJMFF047E24+ AAGAAGGCAAGAATAATGATCACGGATCAAGCAACTTTGAACGTGGGTGACTAAAGAAGT
rJMSF005J07+ AAGAAGGCAAGAATAATGATCACGGATCAAGCAACTTTGAACGTGGGTGACTAAAGAAGT
rJMFF031K13+ AAGAAGGCAAGAATAATGATCACGGATCAAGCAACTTTGAACGTGGGTGACTAAAGAAGT
rJMSF044B11+ AAGAAGGCAAGAATAATGATCACGGATCAAGCAACTTTGAACGTGGGTGACTAAAGAAGT
rJMSF051G24+ AAGAAGGCAAGAATAATGATCACGGATCAAGCAACTTTGAACGTGGGTGACTAAAGAAGT
rJMSF016M02+ AAGAAGGCAAGAATAATGATCACGGATCAAGCAACTTTGAACGTGGGTGACTAAAGAAGT
____________________________________________________________
consensus AAGAAGGCAAGAATAATGATCACGGATCAAGCAACTTTGAACGTGGGTGACTAAAGAAGT

. : . : . : . : . : . :
rJMSF049F09+ TTGCTGTTTAAACTAAAATCCCAGGACACCCCCTTTAGCTAATAGCAATACAAAATTTCA
rJMFF047E24+ TTGCTGTTTAAACTAAAATCCCAGGACACCCCCTTTAGCTAATAGCAATACAAAATTTCA
rJMSF005J07+ TTGCTGTTTAAACTAAAATCCCAGGACACCCCCTTTAGCTAATAGCAATACAAAATTTCA
rJMFF031K13+ TTGCTGTTTAAACTAAAATCCCAGGACACCCCCTTTAGCTAATAGCAATACAAAATTTCA
rJMSF044B11+ TTGCTGTTTAAACTAAAATCCCAGGACACCCCCTTTAGCTAATAGCAATACAAAATTTCA
rJMSF051G24+ TTGCTGTTTAAACTAAAATCCCAGGACACCCCCTTTAGCTAATAGCAATACAAAATTTCA
rJMSF016M02+ TTGCTGTTTAAACTAAAATCCCAGGACACCCCCTTTAGCTAATAGCAATACAAAATTTCA
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consensus TTGCTGTTTAAACTAAAATCCCAGGACACCCCCTTTAGCTAATAGCAATACAAAATTTCA

. : . : . : . : . : . :
rJMSF049F09+ CAACATTAATAACGCGTCTGTTGTATGGTGAATGCAATGTGGCGGGGTTTAAGAGTCGTT
rJMFF047E24+ CAACATTAATAACGCGTCTGTTGTATGGTGAATGCAATGTGGCGGGGTTTAAGAGTCGTT
rJMSF005J07+ CAACATTAATAACGCGTCTGTTGTATGGTGAATGCAATGTGGCGGGGTTTAAGAGTCGTT
rJMFF031K13+ CAACATTAATAACGCGTCTGTTGTATGGTGAATGCAATGTGGCGGGGTTTAAGAGTCGTT
rJMSF044B11+ CAACATTAATAACGCGTCTGTTGTATGGTGAATGCAATGTGGCGGGGTTTAAGAGTCGTT
rJMSF051G24+ CAACATTAATAACGCGTCTGTTGTATGGTGAATGCAATGTGGCGGGGTTTAAGAGTCGTT
rJMSF016M02+ CAACATTAATAACGCGTCTGTTGTATGGTGAATGCAATGTGGCGGGGTTTAAGAGTCGTT
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consensus CAACATTAATAACGCGTCTGTTGTATGGTGAATGCAATGTGGCGGGGTTTAAGAGTCGTT

. : . : . : . : . : . :
rJMSF049F09+ AGAATCAGACTGCAGGTTGATAATCTGTGACACGACGAGCTTTGAGAGCTCGCTGAGTGC
rJMFF047E24+ AGAATCAGACTGCAGGTTGATAATCTGTGACACGACGAGCTTTGAGAGCTCGCTG
rJMSF005J07+ AGAATCAGACTGCAGGTTGATAATCTGTGACACGACGAGCTTTGAGAGCTCGCTGAGTGC
rJMFF031K13+ AGAATCAGACTGCAGGTTGATAATCTGTGACACGACGAGCTTTGAGAGCTCGCTGAGTGC
rJMSF044B11+ AGAATCAGACTGCAGGTTGATAATCTGTGACACGACGAGCTTTGAGAGCTCGCTGAGTGC
rJMSF051G24+ AGAATCAGACTGCAGGTTGATAATCTGTGACACGACGAGCTTTGAGAGCTCGCTGAGTGC
rJMSF016M02+ AGAATCAGACTGCAGGTTGATAATCTGTGACACGACGAGCTTTGAGAGCTCGCTGAGTGC
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consensus AGAATCAGACTGCAGGTTGATAATCTGTGACACGACGAGCTTTGAGAGCTCGCTGAGTGC

. : . : . : . : . : . :
rJMSF049F09+ AGCTTGAACCTGATAATCGTCTTGGTCCCTCTGCCGTGACCATCCAGATGTTTGTGAACT
rJMSF005J07+ AGCTTGAACCTGATAATCGTCTTGGTCCCTCTGCCGTGACCATCCAG
rJMFF031K13+ AGCTTGAACCTGATAATCGTCTTGGTCCCTCTGCCGTGACCATCCAGATGTTTGTGAACT
rJMSF044B11+ AGCTTGAACCTGATAATCGTCTTGGTCCCTCTGCCGTGACCATCCAGATGTTTGTGAACT
rJMSF051G24+ AGCTTGAACCTGATAATCGTCTTGGTCCCTCTGCCGTGACCATCCAGATGTTTGTGAACT
rJMSF016M02+ AGCTTGAACCTGATAATCGTCTTGGTCCCTCTGCCGTGACCATCCAGATGTTTGTGAACT
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consensus AGCTTGAACCTGATAATCGTCTTGGTCCCTCTGCCGTGACCATCCAGATGTTTGTGAACT

. : . : . : . : . : . :
rJMSF049F09+ CAATCTGCTGTATTCGTTTGCAGCTACTTTTGTGTTTTTTGACGTTGATACAACTCTCTC
rJMFF031K13+ CAATCTGCTGTATTCGTTTGCAGCTACTTTTGTGTTTTTTGACGTTGATACAACTCTCTC
rJMSF044B11+ CAATCTGCTGTATTCGTTTGCAGCTACTTTTGTGTTTTTTGACGTTGATACAACTCTCTC
rJMSF051G24+ CAATCTGCTGTATTCGTTTGCAGCTACTTTTGTGTTTTTTGACGTTGATACAACTCTCTC
rJMSF016M02+ CAATCTGCTGTATTCGTTTGCAGCTACTTTTGTGTTTTTTGAAGTTGATACAACTCTCTC
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consensus CAATCTGCTGTATTCGTTTGCAGCTACTTTTGTGTTTTTTGACGTTGATACAACTCTCTC

. : . : . : . : . : . :
rJMSF049F09+ CAAATCGCTTTGTGATAATGGCCTCGGCTCTGAACATGGGCGTCCACTTCTCTCATCATC
rJMFF031K13+ CAAATCGCTTTGTGATAATGGCCTCGGCTCTGAACATGGGCGTCCACTTCTCTCATCATC
rJMSF044B11+ CAAATCGCTTTGTGATAATGGCCTCGGCTCTGAACATGGGCGTCCACTTCTCTCATCATC
rJMSF051G24+ CAAATCGCTTTGTGATAATGGCCTCGGCTCTGAACATGGGCGTCCACTTCTCTCATCATC
rJMSF016M02+ CAAATCGCTTTGTGATAATGGCCTCGGCTCTGAACATGGGCGTCCACTTCTCTCATCATC
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consensus CAAATCGCTTTGTGATAATGGCCTCGGCTCTGAACATGGGCGTCCACTTCTCTCATCATC

. : . : . : . : . : . :
rJMSF049F09+ GAGAAGATCCCTGATGGGAAAATATGCAGCTTTCTTGCAGAGATCAAGAAGATCTGAACC
rJMFF031K13+ GAGAAGATCCCTGATGGGAAAATATGCAGCTTTCTTGCAGAGATCAAGAAGATCTGAACC
rJMSF044B11+ GAGAAGATCCCTGATGGGAAAATATGCAGCTTTCTTGCAGAGATCAAGAAGATCTGAACC
rJMSF051G24+ GAGAAGATCCCTGATGGGAAAATATGCAGCTTTCTTGCAGAGATCAAGAAGATCTGAACC
rJMSF016M02+ GAGAAGATCCCTGATGGGAAAATATGCAGCTTTCTTGCAGAGATCAAGAAGATCTGAACC
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consensus GAGAAGATCCCTGATGGGAAAATATGCAGCTTTCTTGCAGAGATCAAGAAGATCTGAACC

. : . : . : . : . : . :
rJMSF049F09+ AGTGTATCCATCGCATAAACCAGCTATATAGTCGTAGTCGATGCTTTCCTCAACCTTCTC
rJMFF031K13+ AGTGTATCCATCGCATAAACCAGCTATATAGTCGTAGTCGATGCTTTCCTCAACCTTCTC
rJMSF044B11+ AGTGTATCCATCGCATAAACCAGCTATATAGTCGTAGTCGATGCTTTCCTCAACCTTCTC
rJMSF051G24+ AGTGTATCCATCGCATAAACCAGCTATATAGTCGTAGTCGATGCTTTCCTCAACCTTCTC
rJMSF016M02+ AGTGTATCCATCGCATAAACCAGCTATATAGTCGTAGTCGATGCTTTCCTCAACCTTCTC
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consensus AGTGTATCCATCGCATAAACCAGCTATATAGTCGTAGTCGATGCTTTCCTCAACCTTCTC

. : . : . : . : . : . :
rJMSF049F09+ ACCCCTGAGGATCACCTTAAGTATCTCTACTCTCTCCCGGCGCTCGAGGATCCCAATCTC
rJMFF031K13+ ACCCCTGAGGATCACCTTAAGTATCTCTACTCTCTCCCGGCGCTCGGGGATCCCAATCTC
rJMSF044B11+ ACCCC
rJMSF051G24+ ACCCCTGAGGATCACCTTAAGTATCTCTACTCTCTCCCGGCGCTCGGGGATCCCAATCTC
rJMSF016M02+ ACCCCTGAGGATCACCTTAAGTATCTCTACTCTCTCCCGGCGCTCGGGGATCCCAATCTC
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consensus ACCCCTGAGGATCACCTTAAGTATCTCTACTCTCTCCCGGCGCTCGGGGATCCCAATCTC

. : . : . : . : . : . :
rJMSF049F09+ AAAGGCCTGGGGGAGA
rJMFF031K13+ AA
rJMSF051G24+ AAAGGCCTGGGGGAGACGCCGAAGAATTGCTTCATCAAGCTCTGATGGACGGTTAGTTGC
rJMSF016M02+ AAAGGCCTGGGGGAGA
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consensus AAAGGCCTGGGGGAGACGCCGAAGAATTGCTTCATCAAGCTCTGATGGACGGTTAGTTGC

. : . : . : . : . : . :
rJMSF051G24+ AGCTAGTACCATCACTCGTGCATNCTGATCA
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consensus AGCTAGTACCATCACTCGTGCATNCTGATCA