Alignment Contig 5783

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF041E17+ ATATACCCCCATCTCTAGTACAGAAAGAAAACACTANACTAGTTTCTCAAATCAGGTTGT
rJMSF010H15+ ACCCCCATCTCTAGTACAGAAAGAAAACACTAAACTAGTTTCTCAAATCAGGTTGT
rJMSF042L07+ ACCCCCATCTCTAGTACAGAAAGAAAACACTAAACTAGTTTCTCAAATCAGGTTGT
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consensus ATATACCCCCATCTCTAGTACAGAAAGAAAACACTAAACTAGTTTCTCAAATCAGGTTGT

. : . : . : . : . : . :
rJMSF041E17+ TCAGCCCATACAAGCTTTAGAGCTCATCTGTACACAAGTTGCAAGTACAGACAATCTGAA
rJMSF010H15+ TCAGCCCATACAAGCTTTAGAGCTCATCTGTACACAAGTTGCAAGTACAGACAATCTGAA
rJMSF042L07+ TCAGCCCATACAAGCTTTAGAGCTCATCTGTACACAAGTTGCAAGTACAGACAATCTGAA
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consensus TCAGCCCATACAAGCTTTAGAGCTCATCTGTACACAAGTTGCAAGTACAGACAATCTGAA

. : . : . : . : . : . :
rJMSF041E17+ CTAGCGAAAAACAGTAACGTTATACAATTGCAAAGTGCAAGTCAGCGAAGCACAACAGAC
rJMSF010H15+ CTAGCGAAAAACAGTAACGTTATACAATTGCAAAGTGCAAGTCAGCGAAGCACAACAGAC
rJMSF042L07+ CTAGCGAAAAACAGTAACGTTATACAATTGCAAAGTGCAAGTCAGCGAAGCACAACAGAC
rJMSF044P23+ TAACGTTATACAGTTGCAAAGTGCNAGTCAGCGAAGCACANGNGAC
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consensus CTAGCGAAAAACAGTAACGTTATACAATTGCAAAGTGCAAGTCAGCGAAGCACAACAGAC

. : . : . : . : . : . :
rJMSF041E17+ AGCTCCCATGGGTTCAGCCATCCAGTAATTTTAGCGCATTTTACAAATAGAAAAATTGAT
rJMSF010H15+ AGCTCCCATGGGTTCAGCCATCCAGTAATTTTAGCGCATTTTACAAATAGAAAAATTGAT
rJMSF042L07+ AGCTCCCATGGGTTCAGCCATCCAGTAATTTTAGCGCATTTTACAAATAGAAAAATTGAT
rJMSF044P23+ AGCTCCCATGGGTTCAGCCGTCCAGTAATTTTANCGCATTTTANNAANAGAAAAATTGAT
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consensus AGCTCCCATGGGTTCAGCCATCCAGTAATTTTAGCGCATTTTACAAATAGAAAAATTGAT

. : . : . : . : . : . :
rJMSF041E17+ TAACTTTGCTCTTCCAATGATGTGGGCACCTGCCGGGGTGTGCTTAAGGAGAGTGCACTT
rJMSF010H15+ TAACTTTGCTCTTCCAATGATGTGGGCACCTGCCGGGGTGTGCTTAAGGAGAGTGCACTT
rJMSF042L07+ TAACTTTGCTCTTCCAATGATGTGGGCACCTGCCGGGGTGTGCTTAAGGAGAGTGCACTT
rJMSF044P23+ TAACTTTGCTCTNCCAATGANGNGGGCNCCTGNCGGGGTGTGCTTAANGAGAGNGCACTT
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consensus TAACTTTGCTCTTCCAATGATGTGGGCACCTGCCGGGGTGTGCTTAAGGAGAGTGCACTT

. : . : . : . : . : . :
rJMSF041E17+ CCAGTACGGCGTTCAACAGTCATCAGCTACTTACGTCTTGGAAGAACTCAGAAGGTATTG
rJMSF010H15+ CCAGTACGGCGTTCAACAGTCATCAGCTACTTACGTCTTGGAAGAACTCAGAAGGTATTG
rJMSF042L07+ CCAGTACGGCGTTCAACAGTCATCAGCTACTTACGTCTTGGAAGAACTCAGAAGGTATTG
rJMSF044P23+ CCNGNACGGNGTTCNACNGNCANCAGCTACNTACGTCNTGGAAGAACTCGAAAGGTATTG
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consensus CCAGTACGGCGTTCAACAGTCATCAGCTACTTACGTCTTGGAAGAACTCAGAAGGTATTG

. : . : . : . : . : . :
rJMSF041E17+ ATGTTGGGCAAATCTTCTTCGCGACAAATTTATACTTATGCTGGCTGTATTTTTCTCTGA
rJMSF010H15+ ATGTTGGGCAAATCTTCTTCGCGACAAATTTATACTTATGCTGGCTGTATTTTTCTCTGA
rJMSF042L07+ ATGTTGGGCAAATCTTCTTCGCGACAAATTTATACTTATGCTGGCTGTATTTTTCTCTGA
rJMSF044P23+ ATGTTGGGCAAATCTTCTTCGCGACNAATTTATACTTATGCTGGCTGTNTTTTTCTCTGA
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consensus ATGTTGGGCAAATCTTCTTCGCGACAAATTTATACTTATGCTGGCTGTATTTTTCTCTGA

. : . : . : . : . : . :
rJMSF041E17+ TTGCCGGTAAACTAGAATGGTGGCTGTTGCAGCAAAGATTGTGGAGTGCCATAACACAGT
rJMSF010H15+ TTGCCGGTAAACTAGAATGGTGGCTGTTGCAGCAAAGATTGTGGAGTGCCATAACACAGT
rJMSF042L07+ TTGCCGGTAAACTAGAATGGTGGCTGTTGCAGCAAAGATTGTGGAGTGCCATAACACAGT
rJMSF044P23+ TTGCCGGTNAACNANNATGGTGGCTGTTGC
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consensus TTGCCGGTAAACTAGAATGGTGGCTGTTGCAGCAAAGATTGTGGAGTGCCATAACACAGT

. : . : . : . : . : . :
rJMSF041E17+ CACGCAAATCAGATGGCTGGTAGAGAGTGTAATGCCGCAACGTAGAGTTCCAAGGTTTCT
rJMSF010H15+ CACGCAAATCAGATGGCTGGTAGAGAGTGTAATGCCGCAACGTAGAGTTCCAAGGTTTCT
rJMSF042L07+ CACGCAAATCAGATGGCTGGTAGAGAGTGTAATGCCGCAACGTAGAGTTCCAAGGTTTCT
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consensus CACGCAAATCAGATGGCTGGTAGAGAGTGTAATGCCGCAACGTAGAGTTCCAAGGTTTCT

. : . : . : . : . : . :
rJMSF041E17+ TAGAAGGAGTAAGTGTGTATCTCGCCAGAAAAATTGCTGAAGCAGCAACAAGTGAAGGAG
rJMSF010H15+ TAGAAGGAGTAAGTGTGTATCTCGCCAGAAAAATTGCTGAAGCAGCAACAAGTGAAGGAG
rJMSF042L07+ TAGAAGGAGTAAGTGTGTATCTCGCCAGAAAAATTGCTGAAGCAGCAACAAGTGAAGGAG
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consensus TAGAAGGAGTAAGTGTGTATCTCGCCAGAAAAATTGCTGAAGCAGCAACAAGTGAAGGAG

. : . : . : . : . : . :
rJMSF041E17+ AATAACAAAGCATGTCATATGCTAGAAGAGATAGCTCTGCAAGGTAGCTGGCCAAATGCT
rJMSF010H15+ AATAACAAAGCATGTCATATGCTAGAAGAGATAGCTCTGCAAGGTAGCTGGCCAAATGCT
rJMSF042L07+ AATAACAAAGCATGTCATATGCTAGAAGAGATAGCTCTGCAAGGTAGCTGGCCNAATGCT
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consensus AATAACAAAGCATGTCATATGCTAGAAGAGATAGCTCTGCAAGGTAGCTGGCCAAATGCT

. : . : . : . : . : . :
rJMSF041E17+ CCAATTGCAGTGATGAAGCCTCATTGAATCCTTGAGTAGCACGGACAACCCTCCTCAAAA
rJMSF010H15+ CCAATTGCAGTGATGAAGCCTCATTGAATCCTTGAGTAGCACGGACAAACCTCCTCAAAA
rJMSF042L07+ CCAATTGCAGTGATGAAGCCTCATTGA
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consensus CCAATTGCAGTGATGAAGCCTCATTGAATCCTTGAGTAGCACGGACAAACCTCCTCAAAA

. : . : . : . : . : . :
rJMSF010H15+ GCATTTAGCTGTCGGGGCTGTCATTTCAACTTCAAGTANTTAAAA
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consensus GCATTTAGCTGTCGGGGCTGTCATTTCAACTTCAAGTANTTAAAA