Alignment Contig 5595

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF002H22+ ATCTTTTTTGGGATGAGGGGATGCTGCACTGCACAATGTAAGAAGTAGAAGCAATGGAAG
rJMSF005D13+ GAAGCAATGGAAG
rJMSF042D18+ TAAGAAGTAGAAGCAATGGAAG
rJMSF008L03+ TAAGAAGTAGAAGCAATGGAAG
rJMSF038G09+ ATGGAAG
____________________________________________________________
consensus ATCTTTTTTGGGATGAGGGGATGCTGCACTGCACAATGTAAGAAGTAGAAGCAATGGAAG

. : . : . : . : . : . :
rJMSF002H22+ TATGGAACATATCCTATCTCCTATACAGTAATCCATATTATACAGTACAGAACTAAACAA
rJMSF005D13+ TATGGAACATATCCNATCTCCTATACNGTANTCCATATTATACAGTACAGAACTAAACAA
rJMSF042D18+ TATGGAACATATCCTATCTCCTATACAGTAATCCATATTATACAGTACAGAACTAAACAA
rJMSF008L03+ TATGGAACATATCCTATCTCCTATACAGTAATCCATATTATACAGTACAGAACTAAACAA
rJMSF038G09+ TATGGAACATATCCTATCTCCTATACAGTAATCCATATTATACAGTACAGAACTAAACAA
____________________________________________________________
consensus TATGGAACATATCCTATCTCCTATACAGTAATCCATATTATACAGTACAGAACTAAACAA

. : . : . : . : . : . :
rJMSF002H22+ ACTAAACTCGCGGGGTGGGCAGTTTTACTGGCAGTCCATTCTATCTGGCTCCTAAGATTC
rJMSF005D13+ ACTAAACTCGCGGGGTGGGCAGTTTTACTGGCAGTCCATTCTATCTGGCTCCTACGATTC
rJMSF042D18+ ACTAAACTCGCGGGGTGGGCAGTTTTACTGGCAGTCCATTCTATCTGGCTCCTAAGATTC
rJMSF008L03+ ACTAAACTCGCGGGGTGGGCAGTTTTACTGGCAGTCCATTCTATCTGGCTCCTAAGATTC
rJMSF038G09+ ACTAAACTCGCGGGGTGGGCAGTTTTACTGGCAGTCCATTCTATCTGGCTCCTAAGATTC
____________________________________________________________
consensus ACTAAACTCGCGGGGTGGGCAGTTTTACTGGCAGTCCATTCTATCTGGCTCCTAAGATTC

. : . : . : . : . : . :
rJMSF002H22+ ACTCTCTTATGGCATTTTTTCATTGTTGTCTGAGATCACTTCATGAGCGAGTGAACAATT
rJMSF005D13+ ACTCTCTTATGGCNTTTTTTCATTGTTGTCTGAGATCACTTCATGAGCGAGTGAACAATT
rJMSF042D18+ ACTCTCTTATGGCATTTTTTCATTGTTGTCTGAGATCACTTCATGAGCGAGTGAACAATT
rJMSF008L03+ ACTCTCTTATGGCATTTTTTCATTGTTGTCTGAGATCACTTCATGAGCGAGTGAACAATT
rJMSF038G09+ ACTCTCTTATGGCATTTTTTCATTGTTGTCTGAGATCACTTCATGAGCGAGTGAACAATT
____________________________________________________________
consensus ACTCTCTTATGGCATTTTTTCATTGTTGTCTGAGATCACTTCATGAGCGAGTGAACAATT

. : . : . : . : . : . :
rJMSF002H22+ GATGTTTTGGACTCAATGACATCAAGAGGAGGCCGCTGGCTGCAATTCAAGAAATAGATG
rJMSF005D13+ GATGTTTTGGACTCAATGACATCAAGAGGAGGCCGCTGGCTGCAATTCAAGAAATANATG
rJMSF042D18+ GATGTTTTGGACTCAATGACATCAAGAGGAGGCCGCTGGCTGCAATTCAAGAAATAGATG
rJMSF008L03+ GATGTTTTGGACTCAATGACATCAAGAGGAGGCCGCTGGCTGCAATTCAAGAAATAGATG
rJMSF038G09+ GATGTTTTGGACTCAATGACATCAAGAGGAGGCCGCTGGCTGCAATTCAAGAAATAGATG
____________________________________________________________
consensus GATGTTTTGGACTCAATGACATCAAGAGGAGGCCGCTGGCTGCAATTCAAGAAATAGATG

. : . : . : . : . : . :
rJMSF002H22+ CAGCTTCTCGCGCATAAATGCTCTGAATCCAGTTTAGAACAGGGGTGCAATCCTCACGCC
rJMSF005D13+ CAGCTTCTCGCGCATAAATGCTCTGAATCCAGNTTACAACAGGNGTGCAATCCTCACGCC
rJMSF042D18+ CAGCTTCTCGCGCATAAATGCTCTGAATCCAGTTTAGAACAGGGGTGCAATCCTCACGCC
rJMSF008L03+ CAGCTTCTCGCGCATAAATGCTCTGAATCCAGTTTAGAACAGGGGTGCAATCCTCACGCC
rJMSF038G09+ CAGCTTCTCGCGCATAAATGCTCTGAATCCAGTTTAGAACAGGGGTGCAATCCTCACGCC
____________________________________________________________
consensus CAGCTTCTCGCGCATAAATGCTCTGAATCCAGTTTAGAACAGGGGTGCAATCCTCACGCC

. : . : . : . : . : . :
rJMSF002H22+ CGATGAAGTGCTGGTTTCTAGGGCGATAGGTTTTCATTTCTGCAACTTCACGTCGGCTTG
rJMSF005D13+ CGATGAANTGCTGGTTTCTAG
rJMSF042D18+ CGATGAAGTGCTGGTTTCTAGGGCGATAGGTTTTCATTTCTGCAACTTCACGTCGGCTTG
rJMSF008L03+ CGATGAAGTGCTGGTTTCTAGGGCGATAGGTTTTCATTTCTGCAACTTCACGTCGGCTTG
rJMSF038G09+ CGATGAAGTGCTGGTTTCTAGGGCGATAGGTTTTCATTTCTGCAACTTCACGTCGGCTTG
____________________________________________________________
consensus CGATGAAGTGCTGGTTTCTAGGGCGATAGGTTTTCATTTCTGCAACTTCACGTCGGCTTG

. : . : . : . : . : . :
rJMSF002H22+ AAATTTCTTTCTTCACAGAAAGAGATTTAGGAACCTTCAAATGACCAGATTGACTATGAT
rJMSF042D18+ AAATTTCTTTCTTCACAGAAAGAGATTTAGGAACCTTCAAATGACCAGATTGACTATGAT
rJMSF008L03+ AAATTTCTTTCTTCACAGAAAGAGATTTAGGAACCTTCAAATGACCAGATTGACTATGAT
rJMSF038G09+ AAATTTCTTTCTTCACAGAAAGAGATTTAGGAACCTTCAAATGACCAGATTGACTATGAT
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consensus AAATTTCTTTCTTCACAGAAAGAGATTTAGGAACCTTCAAATGACCAGATTGACTATGAT

. : . : . : . : . : . :
rJMSF002H22+ ATGAATCATAGATGAAGTCAAGCACACTTCCCATGGGTCTAGAAGCATCAATCCAGTGAT
rJMSF042D18+ ATGAATCATAGATGAAGTCAAGCACACTTCCCATGGGTCTAGAAGCATCAATCCAGTGAT
rJMSF008L03+ ATGAATCATAGATGAAGTCAAGCACACTTCCCATGGGTCTAGAAGCATCAATCCAGTGAT
rJMSF038G09+ ATGAATCATAGATGAAGTCAAGCACACTTCCCATGGGTCTAGAAGCATCAATCCAGTGAT
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consensus ATGAATCATAGATGAAGTCAAGCACACTTCCCATGGGTCTAGAAGCATCAATCCAGTGAT

. : . : . : . : . : . :
rJMSF002H22+ AAAGTGGTTCATTACGGAACCATGTTAGCTGCCTTTTAGCAAAATTTCTGGATGCTTTCT
rJMSF042D18+ AAAGTGGTTCATTACGGAACCATGTTAGCTGCCTTTTAGCAAAATTTCTGGATGCTTTCT
rJMSF008L03+ AAAGTGGTTCATTACGGAACCATGTTAGCTGCCTTTTAGCAAAATTTCTGGATGCTTTCT
rJMSF038G09+ AAAGTGGTTCATTACGGAACCATGTTAGCTGCCTTTTAGCAAAATTTCTGGATGCTTTCT
____________________________________________________________
consensus AAAGTGGTTCATTACGGAACCATGTTAGCTGCCTTTTAGCAAAATTTCTGGATGCTTTCT

. : . : . : . : . : . :
rJMSF002H22+ GGAATTCAGACAGAAAGGCAAAAAAGTCCCTTGGAGAACTAGAACCCCCTTGTTCTCTGC
rJMSF042D18+ GGAATTCAGACAGAAAGGCAAAAAAGTCCCTTGGAGAACTAGAACCCCCTTGTTCTCTGC
rJMSF008L03+ GGAATTCAGACAGAAAGGCAAAAAAGTCCCTTGGAGAACTAGAACCCCCTTGTTCTCTGC
rJMSF038G09+ GGAATTCAGACAGAAAGGCAAAAAAGTCCCTTGGAGAACTAGAACCCCCTTGTTCTCTGC
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consensus GGAATTCAGACAGAAAGGCAAAAAAGTCCCTTGGAGAACTAGAACCCCCTTGTTCTCTGC

. : . : . : . : . : . :
rJMSF002H22+ AGTACAGGAGGTATTCCATAGCTTGCCGATAACCAATAGCTCGACTTGCAGAATTTGAGT
rJMSF042D18+ AGTACAGGAGGTATTCCATAGCTTGCCGATAACCAATAGCTCGACTTGCAGAATTTGAGT
rJMSF008L03+ AGTACAGGAGGTATTCCATAGCTTGCCGATAACCAATAGCTCGACTTGCAGAATTTGAGT
rJMSF038G09+ AGTACAGGAGGTATTCCATAGCTTGCCGATAACCAATAGCTCGACTTGCAGAATTTGAGT
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consensus AGTACAGGAGGTATTCCATAGCTTGCCGATAACCAATAGCTCGACTTGCAGAATTTGAGT

. : . : . : . : . : . :
rJMSF002H22+ TTGGCAGAAGACCCNAAATCAAGAAGCCCCCTAGC
rJMSF042D18+ TTGGCAGAAGACCC
rJMSF008L03+ TTGGCAGAAGACCC-AAATCAAGAAGCCCCCTAGCCTCAGACAGAACTCCATAATTTTCT
rJMSF038G09+ TTGGCAGAAGACCC-AAATCAAGAAGCCCCCTAGCCTCAGACAGAACTCCATAATTTTCT
____________________________________________________________
consensus TTGGCAGAAGACCC-AAATCAAGAAGCCCCCTAGCCTCAGACAGAACTCCATAATTTTCT

. : . : . : . : . : . :
rJMSF008L03+ AAGAGCATATCTTC
rJMSF038G09+ AAGAGCATATCTTCACACCGGAAATCAATTGATCTATAGAGATCTAGCCTCTGGGTAGTA
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consensus AAGAGCATATCTTCACACCGGAAATCAATTGATCTATAGAGATCTAGCCTCTGGGTAGTA

. : . : . : . : . : . :
rJMSF038G09+ AGAAATACACAGAGGAAGTCATAGTCCAAATCCTTTTCTTTACTCTGCTGAAGCCCATCA
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consensus AGAAATACACAGAGGAAGTCATAGTCCAAATCCTTTTCTTTACTCTGCTGAAGCCCATCA

. : . : . : . : . : . :
rJMSF038G09+ GTGGAAGAACTAATGTCAGAAGTATCTGTTACACC
____________________________________________________________
consensus GTGGAAGAACTAATGTCAGAAGTATCTGTTACACC