Alignment Contig 5578

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF051M03+ CCTTATGGCGGATCACCCTGGAGAGTTTTTTTTTTTTTTTTCCAATTCAAACTCAGATCA
rJMFF047P11+ TTCCAATTCAAACTCAGATCA
rJMFF047D08+ TTCCAATTCAAACTCAGATCA
rJMFF035I16+ ATTGCTTCCAATTCAAACTCAGATCA
rJMFF003B02+ ATTGCTTCCAATTCAAACTCAGATCA
rJMSF027C19+ ATTCAAACTCAGATCA
rJMSF047H17+ AACTCAGATCA
rJMFF001I19+ ATCA
rJMFF025E03+ AACTCAGATCA
____________________________________________________________
consensus CCTTATGGCGGATCACCCTGGAGAGTTTTTTTTTATTGCTTCCAATTCAAACTCAGATCA

. : . : . : . : . : . :
rJMFF051M03+ AAATTGAACTCCTAACAGATCAAGGATATGAATGTTGAGTTGAGTAGTTTAACAATACTA
rJMFF047P11+ AAATTGAACTCCTAACAGATCAAGGATATGAATGTTGAGTTGAGTAGTTTAACAATACTA
rJMFF047D08+ AAATTGAACTCCTAACAGATCAAGGATATGAATGTTGAGTTGAGTAGTTTAACAATACTA
rJMFF035I16+ AAATTGAACTCCTAACAGATCAAGGATATGAATGTTGAGTTGAGTAGTTTAACAATACTA
rJMFF003B02+ AAATTGAACTCCTAACAGATCAAGGATATGAATGTTGAGTTGAGTAGTTTAACAATACTA
rJMSF027C19+ AAATTGAACTCCTAACAGATCAAGGATATGAATGTTGAGTTGAGTAGTTTAACAATACTA
rJMSF047H17+ AAATTGAACTCCTAACAGATCAAGGATATGAATGTTGAGTTGAGTAGTTTAACAATACTA
rJMFF001I19+ AAATTGAACTCCTAACAGATCAAGGATATGAATGTTGAGTTGAGTAGTTTAACAATACTA
rJMFF025E03+ AAATTGAACTCCTAACAGATCAAGGATATGAATGTTGAGTTGAGTAGTTTAACAATACTA
rJMSF046C11+ GGATATGAATGTTGAGTTGAGTAGTTTAACAATACTA
____________________________________________________________
consensus AAATTGAACTCCTAACAGATCAAGGATATGAATGTTGAGTTGAGTAGTTTAACAATACTA

. : . : . : . : . : . :
rJMFF051M03+ CTGAGGAAAGGAACCCCCAGATGAACTCTAAATTTACACTACTGTAACACTGATAATACA
rJMFF047P11+ CTGAGGAAAGGAACCCCCAGATGAACTCTAAATTTACACTACTGTAACACTGATAATACA
rJMFF047D08+ CTGAGGAAAGGAACCCCCAGATGAACTCTAAATTTACACTACTGTAACACTGATAATACA
rJMFF035I16+ CTGAGGAAAGGAACCCCCAGATGAACTCTAAATTTACACTACTGTAACACTGATAATACA
rJMFF003B02+ CTGAGGAAAGGAACCCCCAGATGAACTCTAAATTTACACTACTGTAACACTGATAATACA
rJMSF027C19+ CTGAGGAAAGGAACCCCCAGATGAACTCTAAATTTACACTACTGTAACACTGATAATACA
rJMSF047H17+ CTGAGGAAAGGAACCCCCAGATGAACTCTAAATTTACACTACTGTAACACTGATAATACA
rJMFF001I19+ CTGAGGAAAGGAACCCCCAGATGAACTCTAAATTTACACTACTGTAACACTGATAATACA
rJMFF025E03+ CTGAGGAAAGGAACCCCCAGATGAACTCTAAATTTACACTACTGTAACACTGATAATACA
rJMSF046C11+ CTGAGGAAAGGAACCCCCAGATGAACTCTAAATTTACACTACTGTAACACTGATAATACA
____________________________________________________________
consensus CTGAGGAAAGGAACCCCCAGATGAACTCTAAATTTACACTACTGTAACACTGATAATACA

. : . : . : . : . : . :
rJMFF051M03+ GGAACATGAATCCTGAAGATATCTTAAATTGAGAGCTTGGCAGGAATGGCTTGATCCCTC
rJMFF047P11+ GGAACATGAATCCTGAAGATATCTTAAATTGAGAGCTTGGCAGGAATGGCTTGATCCCTC
rJMFF047D08+ GGAACATGAATCCTGAAGATATCTTAAATTGAGAGCTTGGCAGGAATGGCTTGATCCCTC
rJMFF035I16+ GGAACATGAATCCTGAAGATATCTTAAATTGAGAGCTTGGCAGGAATGGCTTGATCCCTC
rJMFF003B02+ GGAACATGAATCCTGAAGATATCTTAAATTGAGAGCTTGGCAGGAATGGCTTGATCCCTC
rJMSF027C19+ GGAACATGAATCCTGAAGATATCTTAAATTGAGAGCTTGGCAGGAATGGCTTGATCCCTC
rJMSF047H17+ GGAACATGAATCCTGAAGATATCTTAAATTGAGAGCTTGGCAGGAATGGCTTGATCCCTC
rJMFF001I19+ GGAACATGAATCCTGAAGATATCTTAAATTGAGAGCTTGGCAGGAATGGCTTGATCCCTC
rJMFF025E03+ GGAACATGAATCCTGAAGATATCTTAAATTGAGAGCTTGGCAGGAATGGCTTGATCCCTC
rJMSF046C11+ GGAACATGAATCCTGAAGATATCTTAAATTGAGAGCTTGGCAGGAATGGCTTGATCCCTC
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consensus GGAACATGAATCCTGAAGATATCTTAAATTGAGAGCTTGGCAGGAATGGCTTGATCCCTC

. : . : . : . : . : . :
rJMFF051M03+ ACTTTGACCCCAAGGTAGGGAACTGACCAACGTCTTCAATTGATGGGGTTTCAAAACTGC
rJMFF047P11+ ACTTTGACCCCAAGGTAGGGAACTGACCAACGTCTTCAATTGATGGGGTTTCAAAACTGC
rJMFF047D08+ ACTTTGACCCCAAGGTAGGGAACTGACCAACGTCTTCAATTGATGGGGTTTCAAAACTGC
rJMFF035I16+ ACTTTGACCCCAAGGTAGGGAACTGACCAACGTCTTCAATTGATGGGGTTTCAAAACTGC
rJMFF003B02+ ACTTTGACCCCAAGGTAGGGAACTGACCAACGTCTTCAATTGATGGGGTTTCAAAACTGC
rJMSF027C19+ ACTTTGACCCCAAGGTAGGGAACTGACCAACGTCTTCAATTGATGGGGTTTCAAAACTGC
rJMSF047H17+ ACTTTGACCCCAAGGTAGGGAACTGACCAACGTCTTCAATTGATGGGGTTTCAAAACTGC
rJMFF001I19+ ACTTTGACCCCAAGGTAGGGAACTGACCAACGTCTTCAATTGATGGGGTTTCAAAACTGC
rJMFF025E03+ ACTTTGACCCCAAGGTAGGGAACTGACCAACGTCTTCAATTGATGGGGTTTCAAAACTGC
rJMSF046C11+ ACTTTGACCCCAAGGTAGGGAACTGACCAACGTCTTCAATTGATGGGGTTTCAAAACTGC
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consensus ACTTTGACCCCAAGGTAGGGAACTGACCAACGTCTTCAATTGATGGGGTTTCAAAACTGC

. : . : . : . : . : . :
rJMFF051M03+ TGGTATTGTTTCCACCATATCCTCCTCTGCCACTGCCATGGCCCCGACCCCTGCCTCGGC
rJMFF047P11+ TGGTATTGTTTCCACCATATCCTCCTCTGCCACTGCCATGGCCCCGACCCCTGCCTCGGC
rJMFF047D08+ TGGTATTGTTTCCACCATATCCTCCTCTGCCACTGCCATGGCCCCGACCCCTGCCTCGGC
rJMFF035I16+ TGGTATTGTTTCCACCATATCCTCCTCTGCCACTGCCATGGCCCCGACCCCTGCCTCGGC
rJMFF003B02+ TGGTATTGTTTCCACCATATCCTCCTCTGCCACTGCCATGGCCCCGACCCCTGCCTCGGC
rJMSF027C19+ TGGTATTGTTTCCACCATATCCTCCTCTGCCACTGCCATGGCCCCGACCCCTGCCTCGGC
rJMSF047H17+ TGGTATTGTTTCCACCATATCCTCCTCTGCCACTGCCATGGCCCCGACCCCTGCCTCGGC
rJMFF001I19+ TGGTATTGTTTCCACCATATCCTCCTCTGCCACTGCCATGGCCCCGACCCCTGCCTCGGC
rJMFF025E03+ TGGTATTGTTTCCACCATATCCTCCTCTGCCACTGCCATGGCCCCGACCCCTGCCTCGGC
rJMSF046C11+ TGGTATTGTTTCCACCATATCCTCCTCTGCCACTGCCATGGCCCCGACCCCTGCCTCGGC
JMFS096B10- TCTGCCACTGCCATGGCCCCGACCCCTGCCTCGGC
____________________________________________________________
consensus TGGTATTGTTTCCACCATATCCTCCTCTGCCACTGCCATGGCCCCGACCCCTGCCTCGGC

. : . : . : . : . : . :
rJMFF051M03+ CACCTGGGCGATAGTACGTTTCACCTTCAGCAGGCTTCAGAAATTCGTTTATACTTTTTG
rJMFF047P11+ CACCTGGGCGATAGTACGTTTCACCTTCAGCAGGCTTCAGAAATTCGTTTATACTTTTTG
rJMFF047D08+ CACCTGGGCGATAGTACGTTTCACCTTCAGCAGGCTTCAGAAATTCGTTTATACTTTTTG
rJMFF035I16+ CACCTGGGCGATAGTACGTTTCACCTTCAGCAGGCTTCAGAAATTCGTTTATACTTTTTG
rJMFF003B02+ CACCTGGGCGATAGTACGTTTCACCTTCAGCAGGCTTCAGAAATTCGTTTATACTTTTTG
rJMSF027C19+ CACCTGGGCGATAGTACGTTTCACCTTCAGCAGGCTTCAGAAATTCGTTTATACTTTTTG
rJMSF047H17+ CACCTGGGCGATAGTACGTTTCACCTTCAGCAGGCTTCAGAAATTCGTTTATACTTTTTG
rJMFF001I19+ CACCTGGGCGATAGTACGTTTCACCTTCAGCAGGCTTCAGAAATTCGTTTATACTTTTTG
rJMFF025E03+ CACCTGGGCGATAGTACGTTTCACCTTCAGCAGGCTTCAGAAATTCGTTTATACTTTTTG
rJMSF046C11+ CACCTGGGCGATAGTACGTTTCACCTTCAGCAGGCTTCAGAAATTCGTTTATACTTTTTG
JMFS096B10- CACCTGGGCGATAGTACGTTTCACCTTCAGCAGGCTTCAGAAATTCGTTTATACTTTTTG
____________________________________________________________
consensus CACCTGGGCGATAGTACGTTTCACCTTCAGCAGGCTTCAGAAATTCGTTTATACTTTTTG

. : . : . : . : . : . :
rJMFF051M03+ TCTTTTT-GACCTTTTCTCCGGCCTCTTTCTTTTTATCTTCTTTTTCAGATCCCAACTTA
rJMFF047P11+ TCTTTTT-GACCTTTTCTCCGGCCTCTTTCTTTTTATCTTCTTTTTCAGATCCCAACTTA
rJMFF047D08+ TCTTTTT-GACCTTTTCTCCGGCCTCTTTCTTTTTATCTTCTTTTTCAGATCCCAACTTA
rJMFF035I16+ TCTTTTT-GACCTTTTCTCCGGCCTCTTTCTTTTTATCTTCTTTTTCAGATCCCAACTTA
rJMFF003B02+ TCTTTTT-GACCTTTTCTCCGGCCTCTTTCTTTTTATCTTCTTTTTCAGATCCCAACTTA
rJMSF027C19+ TCTTTTTTGACCTTTTCTCCGGCCTCTTTCTTTTTATCTTCTTTTTCAGATCCCAACTTA
rJMSF047H17+ TCTTTTT-GACCTTTTCTCCGGCCTCTTTCTTTTTATCTTCTTTTTCAGATCCCAACTTA
rJMFF001I19+ TCTTTTT-GACCTTTTCTCCGGCCTCTTTCTTTTTATCTTCTTTTTCAGATCCCAACTTA
rJMFF025E03+ TCTTTTT-GACCTTTTCTCCGGCCTCTTTCTTTTTATCTTCTTTTTCAGATCCCAACTTA
rJMSF046C11+ TCTTTTT-GACCTTTTCTCCGGCCTCTTTCTTTTTATCTTCTTTTTCAGATCCCAACTTA
JMFS096B10- TCTTTTT-GACCTTTTCTCCGGCCTCTTTCTTTTTATCTTCTTTTTCAGATCCCAACTTA
____________________________________________________________
consensus TCTTTTT-GACCTTTTCTCCGGCCTCTTTCTTTTTATCTTCTTTTTCAGATCCCAACTTA

. : . : . : . : . : . :
rJMFF051M03+ ACAAAGACCTCATCATCATTCTTCTTATTTGCCAACAGTGCCATGGATTCAAATTCTTTG
rJMFF047P11+ ACAAAGACCTCATCATCATTCTTCTTATTTGCCAACAGTGCCATGGATTCAAATTCTTTG
rJMFF047D08+ ACAAAGACCTCATCATCATTCTTCTTATTTGCCAACAGTGCCATGGATTCAAATTCTTTG
rJMFF035I16+ ACAAAGACCTCATCATCATTCTTCTTATTTGCCAACAGTGCCATGGATTCAAATTCTTTG
rJMFF003B02+ ACAAAGACCTCATCATCATTCTTCTTATTTGCCAACAGTGCCATGGATTCAAATTCTTTG
rJMSF027C19+ ACAAAGACCTCATCATCATTCTTCTTATTTGCCAACAGTGCCATGGATTCAAATTCTTTG
rJMSF047H17+ ACAAAGACCTCATCATCATTCTTCTTATTTGCCAACAGTGCCATGGATTCAAATTCTTTG
rJMFF001I19+ ACAAAGACCTCATCATCATTCTTCTTATTTGCCAACAGTGCCATGGATTCAAATTCTTTG
rJMFF025E03+ ACAAAGACCTCATCATCATTCTTCTTATTTGCCAACAGTGCCATGGATTCAAATTCTTTG
rJMSF046C11+ ACAAAGACCTCATCATCATTCTTCTTATTTGCCAACAGTGCCATGGATTCAAATTCTTTG
JMFS096B10- ACAAAGACCTCATCATCATTCTTCTTATTTGCCAACAGTGCCATGGATTCAAATTCTTTG
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consensus ACAAAGACCTCATCATCATTCTTCTTATTTGCCAACAGTGCCATGGATTCAAATTCTTTG

. : . : . : . : . : . :
rJMFF051M03+ TCTAAGCAAACCTTTCTTTCCTCAGGCCTTGATGCCAGAATAGCCTTTCTCTTCTCCTCC
rJMFF047P11+ TCTAAGCAAACCTTTCTTTCCTCAGGCCTTGATGCCAGAATAGCCTTTCTCTTCTCCTC
rJMFF047D08+ TCTAAGCAA-CCTTTCTTTCCTCAGGCCTTGATGCCAGAAT
rJMFF035I16+ TCTAAGCAAACCTTTCTTTCCTCAGGCCTTGATGCCAGAATAGCCTTTCTCTTCTCCTCC
rJMFF003B02+ TCTAAGCAAACCTTTCTTTCCTCAGGCCTTGATGCCAGAATAGCCTTTCTCTTCTCCTCC
rJMSF027C19+ TCTAAGCAAACCTTTCTTTCCTCAGGCCTTGATGCCAGAATAGCCTTTCTCTTCTCCTCC
rJMSF047H17+ TCTAAGCAAACCTTTCTTTCCTCAGGCCTTGATGCCAGAATAGCCTTTCTCTTCTCCTCC
rJMFF001I19+ TCTAAGCAAACCTTTCTTTCCTCAGGCCTTGATGCCAGAATAGCCTTTCTCTTCTCCTCC
rJMFF025E03+ TCTAAGCAAACCTTTCTTTCCTCAGGCCTTGATGCCAGAATAGCCTTTCTCTTCTCCTCC
rJMSF046C11+ TCTAAGCAAACCTTTCTTTCCTCAGGCCTTGATGCCAGAATAGCCTTTCTCTTCTCCTCC
JMFS096B10- TCTAAGCAAACCTTTCTTTCCTCAGGCCTTGATGCCAGAATAGCCTTTCTCTTCTCCTCC
____________________________________________________________
consensus TCTAAGCAAACCTTTCTTTCCTCAGGCCTTGATGCCAGAATAGCCTTTCTCTTCTCCTCC

. : . : . : . : . : . :
rJMFF051M03+ AACAATTTCTCATACTCATC
rJMFF035I16+ AACAATTTCTCATACTCATCCAGAGTCATCTCCTTATCCTCAGGTTCCTTTACTTCTGGT
rJMFF003B02+ AACAATTTCTCATACTCATCCAGAGTCAACTCCTTATCCTCAGGTTCCTTTACTTCTGGT
rJMSF027C19+ AACAATTTCTCATACTCATCCAGAGTCATCTCCTTATCCTCAGGTTCCTTTACTTCTGGT
rJMSF047H17+ AACAATTTCTCATACTCATCCAGAGTCATCTCCTTATCCTCAGGTTCCTTTACTTCTGGT
rJMFF001I19+ AACAATTTCTCATACTCATCCAGAGTCATCTCCTTATCCTCAGGTTCCTTTACTTCTGGT
rJMFF025E03+ AACAATTTCTCATACTCATCCAGAGTCATCTCCTTATCCTCAGGTTCCTTTACTTCTGGT
rJMSF046C11+ AACAATTTCTCATACTCATCCAGAGTCATCTCCTTATCCTCAGGTTCCTTTACTTCTGGT
JMFS096B10- AACAATTTCTCATACTCATCCAGAGTCATCTCCTTATCCTCAGGTTCCTTTACTTCTGGT
____________________________________________________________
consensus AACAATTTCTCATACTCATCCAGAGTCATCTCCTTATCCTCAGGTTCCTTTACTTCTGGT

. : . : . : . : . : . :
rJMFF035I16+ TCATCCAATGGAGAATCCTTCTTGGCATCTCCAGCATCTTCTTGCCCATGTTGCTTCTCA
rJMFF003B02+ TCATCCAATGGAGAATCCTTCTTGGCATCTCCAGCATCTTCTTGCCCATGTTGCTTCTCA
rJMSF027C19+ TCATCCAATGGAGAATCCTTCTTGGCATCTCCAGCATCTTCTTGCCCATGTTGCTTCTCA
rJMSF047H17+ TCATCCAATGGAGAATCCTTCTTGGCATCTCCAGCATCTTCTTGCCCATGTTGCTTCTCA
rJMFF001I19+ TCATCCAATGGAGAATCCTTCTTGGCATCTCCAGCATCTTCTTGCCCATGNTGCTTCTCA
rJMFF025E03+ TCATCCAATGGAGAATCCTTCTTGGCATCTCCAGCATCTTCTTGCCCATGTTGCTTCTCA
rJMSF046C11+ TCATCCAATGGAGAATCCTTCTTGGCATCTCCAGCATCTTCTTGCCCATGTTGCTTCTCA
JMFS096B10- TCATCCAATGGAGAATCCTTCTTGGCATCTCCAGCATCTTCTTGCCCATGTTGCTTCTCA
____________________________________________________________
consensus TCATCCAATGGAGAATCCTTCTTGGCATCTCCAGCATCTTCTTGCCCATGTTGCTTCTCA

. : . : . : . : . : . :
rJMFF035I16+ AATGCATCAGTGTTCACACCATCATTAACAACTCCATTTATGGGCTCTTCAGCTTCAGGA
rJMFF003B02+ AATGCATCAGTGTTCACACCATCATTAACAACTCCATTTATGGGCTCTTCAGCTTCAGGA
rJMSF027C19+ AATGCATCAGTGTTCACACCATCATTAACAACTCCATTTATGGGCTCTTCAGCTTCAGGA
rJMSF047H17+ AATGCATCAGTGTTCACACCATCATTAACAACTCCATTTATGGGCTCTTCAGCTTCAGGA
rJMFF001I19+ AATGCATCAGTGGTCACACCATCATTAA
rJMFF025E03+ AATGCATCAGTGTTCACACCATCATTAACAACTCCATTTATGGGCTCTTC
rJMSF046C11+ AATGCATCAGTGTTCACACCATCATTAACAACTCCATTTATGGGCTCTTCAGCTTCAGGA
JMFS096B10- AATGCATCAGTGTTCACACCATCATTAACAACTCCATTTATGGGCTCTTCAGCTTCAGGA
____________________________________________________________
consensus AATGCATCAGTGTTCACACCATCATTAACAACTCCATTTATGGGCTCTTCAGCTTCAGGA

. : . : . : . : . : . :
rJMFF035I16+ GCAATCTCATCTGTA
rJMFF003B02+ GCAATCTCATCTGT
rJMSF027C19+ GCAATCTCATCTGTAGGA
rJMSF047H17+ GCAATCTCATCTGTAGGACTTCCCCAGTTTCCG
rJMSF046C11+ GCAATCTCATCTGTAGGACTTCCCCAGTTTCCGCGACCAGAACCCTCACGCTTAATTTCA
JMFS096B10- GCAATCTCATCTGTAGGACTTCCCCAGTTTCCGCGACCAGAACCCTCACGCTTAATTTCA
____________________________________________________________
consensus GCAATCTCATCTGTAGGACTTCCCCAGTTTCCGCGACCAGAACCCTCACGCTTAATTTCA

. : . : . : . : . : . :
rJMSF046C11+ CTCCCACGCCC
JMFS096B10- CTCCCACGCCCTGTTCCACTACGGCGTTCATATGCCCTGCGAGGATATTCCCCATCAGCA
____________________________________________________________
consensus CTCCCACGCCCTGTTCCACTACGGCGTTCATATGCCCTGCGAGGATATTCCCCATCAGCA

. : . : . : . : . : . :
JMFS096B10- TTTTCACCATTGCTTAGACCACCACGGCGATCACCATTGCTTAGAC
____________________________________________________________
consensus TTTTCACCATTGCTTAGACCACCACGGCGATCACCATTGCTTAGAC