Alignment Contig 5567

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF050K10+ ATAGTCGATCAAAACTCGGTCAGATTAGTCTTATTTAACAGGATGCGAATACCAGTTTAC
rJMFF003P07+ GGTCAGATTAGTCTTATTTAACAGGATGCGAATACCAGTTTAC
rJMFF038I24+ CTTATTTAACAGGATGCGAATACCAGTTTAC
rJMFF028B16+ CTTATTTAACAGGATGCGAATACCAGTTTAC
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consensus ATAGTCGATCAAAACTCGGTCAGATTAGTCTTATTTAACAGGATGCGAATACCAGTTTAC

. : . : . : . : . : . :
rJMFF050K10+ AAAAATTGTTGTATATATATGGCTATTTGCTTACACTTTTGATTATATCATGTGAGTGAT
rJMFF003P07+ AAAAATTGTTGTATATATATGGCTATTTGCTTACACTTTTGATTATATCATGTGAGTGAT
rJMFF038I24+ AAAAATTGTTGTATATATATGGCTATTTGCTTACACTTTTGATTATATCATGTGAGTGAT
rJMFF028B16+ AAAAATTGTTGTATATATATGGCTATTTGCTTACACTTTTGATTATATCATGTGAGTGAT
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consensus AAAAATTGTTGTATATATATGGCTATTTGCTTACACTTTTGATTATATCATGTGAGTGAT

. : . : . : . : . : . :
rJMFF050K10+ GAGGTGAAGATTACAGAGAAATGAGTTGATTGAGATTGACAGGGTTTGCATATTGCTTAG
rJMFF003P07+ GAGGTGAAGATTACAGAGAAATGAGTTGATTGAGATTGACAGGGTTTGCATATTGCTTAG
rJMFF038I24+ GAGGTGAAGATTACAGAGAAATGAGTTGATTGAGATTGACAGGGTTTGCATATTGCTTAG
rJMFF028B16+ GAGGTGAAGATTACAGAGAAATGAGTTGATTGAGATTGACAGGGTTTGCATATTGCTTAG
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consensus GAGGTGAAGATTACAGAGAAATGAGTTGATTGAGATTGACAGGGTTTGCATATTGCTTAG

. : . : . : . : . : . :
rJMFF050K10+ AGCCACTAAAAACTGCACTGGCAAGAACACTAGCTGCGGTCTCCGTGGGGTGATATCTGT
rJMFF003P07+ AGCCACTAAAAACTGCACTGGCAAGAACACTAGCTGCGGTCTCCGTGGGGTGATATCTGT
rJMFF038I24+ AGCCACTAAAAACTGCACTGGCAAGAACACTAGCTGCGGTCTCCGTGGGGTGATATCTGT
rJMFF028B16+ AGCCACTAAAAACTGCACTGGCAAGAACACTAGCTGCGGTCTCCGTGGGGTGATATCTGT
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consensus AGCCACTAAAAACTGCACTGGCAAGAACACTAGCTGCGGTCTCCGTGGGGTGATATCTGT

. : . : . : . : . : . :
rJMFF050K10+ CCCAGAAAATATAATCACTTCTCTTGGAGCAATATATGGATATCGGAGTGCATGGAAGCT
rJMFF003P07+ CCCAGAAAATATAATCACTTCTCTTGGAGCAATATATGGATATCGGAGTGCATGGAAGCT
rJMFF038I24+ CCCAGAAAATATAATCACTTCTCTTGGAGCAATATATGGATATCGGAGTGCATGGAAGCT
rJMFF028B16+ CCCAGAAAATATAATCACTTCTCTTGGAGCAATATATGGATATCGGAGTGCATGGAAGCT
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consensus CCCAGAAAATATAATCACTTCTCTTGGAGCAATATATGGATATCGGAGTGCATGGAAGCT

. : . : . : . : . : . :
rJMFF050K10+ CAGCATTCAACCTCCCCAATCCACAGCAAGCAGCTTTCACTTCCTTAAACCCGTAAGTTG
rJMFF003P07+ CAGCATTCAACCTCCCCAATCCACAGCAAGCAGCTTTCACTTCCTTAAACCCGTAAGTTG
rJMFF038I24+ CAGCATTCAACCTCCCCAATCCACAGCAAGCAGCTTTCACTTCCTTAAACCCGTAAGTTG
rJMFF028B16+ CAGCATTCAACCTCCCCAATCCACAGCAAGCAGCTTTCACTTCCTTAAACCCGTAAGTTG
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consensus CAGCATTCAACCTCCCCAATCCACAGCAAGCAGCTTTCACTTCCTTAAACCCGTAAGTTG

. : . : . : . : . : . :
rJMFF050K10+ ATGGGTTTTGAATGACGGTTAGAAGGAAATTGTAGGTGTCGAAATATGAGTAGTTGAAGT
rJMFF003P07+ ATGGGTTTTGAATGACGGTTAGAAGGAAATTGTAGGTGTCGAAATATGAGTAGTTGAAGT
rJMFF038I24+ ATGGGTTTTGAATGACGGTTAGAAGGAAATTGTAGGTGTCGAAATATGAGTAGTTGAAGT
rJMFF028B16+ ATGGGTTTTGAATGACGGTTAGAAGGAAATTGTAGGTGTCGAAATATGAGTAGTTGAAGT
____________________________________________________________
consensus ATGGGTTTTGAATGACGGTTAGAAGGAAATTGTAGGTGTCGAAATATGAGTAGTTGAAGT

. : . : . : . : . : . :
rJMFF050K10+ CATTGAGACTGGATTTCAAGCTCTGAAGCATTGACTGAAGTCCTTGGTTGTACTTGTTTG
rJMFF003P07+ CATTGAGACTGGATTTCAAGCTCTGAAGCATTGACTGAAGTCCTTGGTTGTACTTGTTTG
rJMFF038I24+ CATTGAGACTGGATTTCAAGCTCTGAAGCATTGACTGAAGTCCTTGGTTGTACTTGTTTG
rJMFF028B16+ CATTGAGACTGGATTTCAAGCTCTGAAGCATTGACTGAAGTCCTTGGTTGTACTTGTTTG
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consensus CATTGAGACTGGATTTCAAGCTCTGAAGCATTGACTGAAGTCCTTGGTTGTACTTGTTTG

. : . : . : . : . : . :
rJMFF050K10+ CCCAGTAATTTGCTCCGTCGAGGCACTCCCCGGTTTTGTTCGGGTGCCGGTGCCGCAGCA
rJMFF003P07+ CCCAGTAATTTGCTCCGTCGAGGCACTCCCCGGTTTTGTTCGGGTGCCGGTGCCGCAGCA
rJMFF038I24+ CCCAGTAATTTGCTCCGTCGAGGCACTCCCCGGTTTTGTTCGGGTGCCGGTGCCGCAGCA
rJMFF028B16+ CCCAGTAATTTGCTCCGTCGAGGCACTCCCCGGTTTTGTTCGGGTGCCGGTGCCGCAGCA
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consensus CCCAGTAATTTGCTCCGTCGAGGCACTCCCCGGTTTTGTTCGGGTGCCGGTGCCGCAGCA

. : . : . : . : . : . :
rJMFF050K10+ ACGGCATGCATCCGATCGCCGGCACTCCCGGAATCACAAATTTACGTGC
rJMFF003P07+ ACGGCATGCATCCGATCGCCGGCACTCCCGGAATCACAAATTTACGTGCCCCCAAACCGT
rJMFF038I24+ ACGGCATGCATCCGATCGCCGGCACTCCCGGAATCACAAATTTACGTGCCCCCAAACCGT
rJMFF028B16+ ACGGCATGCATCCGATCGCCGGCACTCCCGGAATCACAAATTTACGTGCCCCCAAACCGT
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consensus ACGGCATGCATCCGATCGCCGGCACTCCCGGAATCACAAATTTACGTGCCCCCAAACCGT

. : . : . : . : . : . :
rJMFF003P07+ GCAATTGTTGTAAGTAGGGTTTGAGGGTGGCAGTCATCTGATCAACGAATTGTTGCGGCG
rJMFF038I24+ GCAATTGTTGTAAGTAGGGTTTGAGGGTGGCAGTCATCTGATCAACGAATTGTTGCGGCG
rJMFF028B16+ GCAATTGTTGTAAGTAGGGTTTGAGGGTGGCAGTCATCTGATCAACGAATTGTTGCGGCG
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consensus GCAATTGTTGTAAGTAGGGTTTGAGGGTGGCAGTCATCTGATCAACGAATTGTTGCGGCG

. : . : . : . : . : . :
rJMFF003P07+ GAGTGGTGTTGGGGAGCTTGGAATCGGAGTTGAAGTANTTGATGANATCATTGCTTCCGA
rJMFF038I24+ GAGTGGTGTTGGGGAGCTTGGAATCGGAGTTGAAGTAGTTGATGAGATCATTGCTTCCGA
rJMFF028B16+ GAGTGGTGTTGGGGAGCTTGGAATCGGAGTTGAAGTAGTTGATGAGATCATTGCTTCCGA
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consensus GAGTGGTGTTGGGGAGCTTGGAATCGGAGTTGAAGTAGTTGATGAGATCATTGCTTCCGA

. : . : . : . : . : . :
rJMFF003P07+ TGAAAATGANGAAG
rJMFF038I24+ TGA
rJMFF028B16+ TGA
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consensus TGAAAATGANGAAG