Alignment Contig 5564

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF050H15+ ACCCTGGAGAGTTTTTTTTTTTTTTTTAGGCAAATAGATTTGTTTTTTCATTTTTATTTG
rJMFF009D04+ TTTTTATTTG
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consensus ACCCTGGAGAGTTTTTTTTTTTTTTTTAGGCAAATAGATTTGTTTTTTCATTTTTATTTG

. : . : . : . : . : . :
rJMFF050H15+ TTACGAGTAATAGTATAATACCATGCAAAAACTCCAAACTTGCTTGTCATTGATAGCTGG
rJMFF009D04+ TTACGAGTAATAGTATAATACCATGCAAAAACTCCAAACTTGCTTGTCATTGATAGCTGG
rJMSF053G09+ AAAACTCCAAACTTGCTTGTCATTGATAGCTGG
rJMFF034P23+ ACTTGCTTGTNATTGATAGCTGG
rJMSF032D11+ AGCTGG
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consensus TTACGAGTAATAGTATAATACCATGCAAAAACTCCAAACTTGCTTGTCATTGATAGCTGG

. : . : . : . : . : . :
rJMFF050H15+ ATTGATAGTTTATATAACTTCAGTGAGTGCAGAGTAGGCAAATATCAAAGATACCTCAAT
rJMFF009D04+ ATTGATAGTTTATATAACTTCAGTGAGTGCAGAGTAGGCAAATATCAAAGATACCTCAAT
rJMSF053G09+ ATTGATAGTTTATATAACTTCAGTGAGTGCAGAGTAGGCAAATATCAAAGATACCTCAAT
rJMFF034P23+ ATTGATAGTTTATATAACTTCAGTGAGTGCAGAGTAGGCAAATATCAAAGATACCTCAAT
rJMSF032D11+ ATTGATAGTTTATATAACTTCAGTGAGTGCAGAGTAGGCAAATATCAAAGATACCTCAAT
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consensus ATTGATAGTTTATATAACTTCAGTGAGTGCAGAGTAGGCAAATATCAAAGATACCTCAAT

. : . : . : . : . : . :
rJMFF050H15+ GATCTCACTTACAAGTCACAATAGACTATACAGGAACAACCTCTGGCTGGAGAGGTGACG
rJMFF009D04+ GATCTCACTTACAAGTCACAATAGACTATACAGGAACAACCTCTGGCTGGAGAGGTGACG
rJMSF053G09+ GATCTCACTTACAAGTCACAATAGACTATACAGGAACAACCTCTGGCTGGAGAGGTGACG
rJMFF034P23+ GATCTCACTTACAAGTCACAATAGACTATACAGGAACAACCTCTGGCTGGAGAGGTGACG
rJMSF032D11+ GATCTCACTTACAAGTCACAATAGACTATACAGGAACAACCTCTGGCTGGAGAGGTGACG
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consensus GATCTCACTTACAAGTCACAATAGACTATACAGGAACAACCTCTGGCTGGAGAGGTGACG

. : . : . : . : . : . :
rJMFF050H15+ AGTCATCATCCTTTGTACTCTTATTCTCAGCTGTATCTTTAGCTTCAGTTTCTTTGTCTT
rJMFF009D04+ AGTCATCATCCTTTGTACTCTTATTCTCAGCTGTATCTTTAGCTTCAGTTTCTTTGTCTT
rJMSF053G09+ AGTCATCATCCTTTGTACTCTTATTCTCAGCTGTATCTTTAGCTTCAGTTTCTTTGTCTT
rJMFF034P23+ AGTCNTCATCCTTTGTACTCTTATTCTCAGCTGTATCTTTAGCTTCAGTTTCTTTGTCTT
rJMSF032D11+ AGTCATCATCCTTTGTACTCTTATTCTCAGCTGTATCTTTAGCTTCAGTTTCTTTGTCTT
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consensus AGTCATCATCCTTTGTACTCTTATTCTCAGCTGTATCTTTAGCTTCAGTTTCTTTGTCTT

. : . : . : . : . : . :
rJMFF050H15+ CTACAAATCCATCCTTGAACCTATCGTAATTTGTGGGCTCACTACTCTTGAATGGGCGTT
rJMFF009D04+ CTACAAATCCATCCTTGAACCTATCGTAATTTGTGGGCTCACTACTCTTGAATGGGCGTT
rJMSF053G09+ CTACAAATCCATCCTTGAACCTATCGTAATTTGTGGGCTCACTACTCTTGAATGGGCGTT
JMFS069A07- TACAAATCCATCCTTGAACCTATCGTAATTTGTGGGCTCACTACTCTTGAATGGGCGTT
rJMFF034P23+ CTACAAATCCATCCTTGAACCTATCGTAATTTGTGGGCTCACTACTCTTGAATGGGCGTT
rJMSF032D11+ CTACAAATCCATCCTTGAACCTATCGTAATTTGTGGGCTCACTACTCTTGAATGGGCGTT
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consensus CTACAAATCCATCCTTGAACCTATCGTAATTTGTGGGCTCACTACTCTTGAATGGGCGTT

. : . : . : . : . : . :
rJMFF050H15+ CGCCGAGTACCCGAACCAAATCCTCTTGATGCAAGACCTCCTTCTCAAGTAACAATTCAG
rJMFF009D04+ CGCCGAGTACCCGAACCAAATCCTCTTGATGCAAGACCTCCTTCTCAAGTAACAATTCAG
rJMSF053G09+ CGCCGAGTACCCGAACCAAATCCTCTTGATGCAAGACCTCCTTCTCAAGTAACAATTCAG
JMFS069A07- CGCCGAGTACCCGAACCAAATCCTCTTGATGCAAGACCTCCTTCTCAAGTAACAATTCAG
rJMFF034P23+ CGCCGAGTACCCGAACCAAATCCTCTTGATGCAAGACCTCCTTCTCAAGTAACAATTCAG
rJMSF032D11+ CGCCGAGTACCCGAACCAAATCCTCTTGATGCAAGACCCCCTTCTCAAGTAACAATTCAG
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consensus CGCCGAGTACCCGAACCAAATCCTCTTGATGCAAGACCTCCTTCTCAAGTAACAATTCAG

. : . : . : . : . : . :
rJMFF050H15+ CAATCTGAGCTACATGCTCCTTGTGCTCCTCTATGAGCTGGACTGTGCATTCATAAGCCT
rJMFF009D04+ CAATCTGAGCTACATGCTCCTTGTGCTCCTCTATGAGCTGGACTGTGCATTCATAAGCCT
rJMSF053G09+ CAATCTGAGCTACATGCTCCTTGTGCTCCTCTATGAGCTGGACTGTGCATTCATAAGCCT
JMFS069A07- CAATCTGAGCTACATGCTCCTTGTGCTCCTCTATGAGCTGGACTGTGCATTCATAAGCCT
rJMFF034P23+ CAATCTGAGCTACATGCTCCTTGTGCTCCTCTATGAGCTGGACTGTGCATTCATAAGCCT
rJMSF032D11+ CAATCTGAGCTACATGCTCCTTGTGCTCCTCTATGAGCTGGACTGTGCATTCATAAGCCT
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consensus CAATCTGAGCTACATGCTCCTTGTGCTCCTCTATGAGCTGGACTGTGCATTCATAAGCCT

. : . : . : . : . : . :
rJMFF050H15+ TTGCAATCCATTCTCTAACTTCATTGTCAATGATGGCAGCAGTTTTGTTGCTGTAAGGCT
rJMFF009D04+ TTGCAATCCATTCTCTAACTTCATTGTCAATGATGGCAGCAGTTTTGTTGCTGTAAGGCT
rJMSF053G09+ TTGCAATCCATTCTCTAACTTCATTGTCAATGATGGCAGCAGTTTTGTTGCTGTAAGGCT
JMFS069A07- TTGCAATCCATTCTCTAACTTCATTGTCAATGATGGCAGCAGTTTTGTTGCTGTAAGGCT
rJMFF034P23+ TTGCAATCCATTCTCTAACTTCATTGTNAATGATGGCAGCAGTTTTGTTGCTGTAAGGCT
rJMSF032D11+ TTGCAATCCATTCTCTAACTTCATTGTCAATGATGGCAGCAGTTTTGTTGCTGTAAGGCT
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consensus TTGCAATCCATTCTCTAACTTCATTGTCAATGATGGCAGCAGTTTTGTTGCTGTAAGGCT

. : . : . : . : . : . :
rJMFF050H15+ TGCTCATCTNCAATGCATTTTCATTTGGAGGGAAAGAAAGCAGACCAACCTTGTCACTGA
rJMFF009D04+ TGCTCATCTCAAATGCATTTTCATTTGGAGGGAAGGAAAGCAGACCAACCTTGTCACTGA
rJMSF053G09+ TGCTCATCTCAAATGCATTTTCATTTGGAGGGAAGGAAAGCAGACCAACCTTGTCACTGA
JMFS069A07- TGCTCATCTCAAATGCATTTTCATTTGGAGGGAAGGAAAGCAGACCAACCTTGTCACTGA
rJMFF034P23+ TGCTCATCTCAAATGCATTTTCATTTGGAGGGAAGGAAAGCAGACCAACCTTGTCACTGA
rJMSF032D11+ TGCTCATCTCAAATGCATTTTCATTTGGAGGGAAGGAAAGCAGACCAACCTTGTCACTGA
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consensus TGCTCATCTCAAATGCATTTTCATTTGGAGGGAAGGAAAGCAGACCAACCTTGTCACTGA

. : . : . : . : . : . :
rJMFF050H15+ AACCATACACTGCCACTTGGGCATAT
rJMFF009D04+ AACCATACACTGCCACTTGGGCATATGTCA-TCTTGGTGACTTTCTCCAAATCATTCTGT
rJMSF053G09+ AACCATACACTGCCACTTGGGCATATGTCA-TCTTGGTGACTTTCTCCAAATCATTCTGT
JMFS069A07- AACCATACACTGCCACTTGGGCATATGTCA-TCTTGGTGACTTTCTCCAAATCATTCTGT
rJMFF034P23+ AACCATACACTGCCACTTGGGCATATGTCANTCTTGGTGACTTTCTCCAGATCATTCTGT
rJMSF032D11+ AACCATACACTGCCACTTGGGCATATGTCA-TCTTGGTGACTTTCTCCAAATCATTCTGT
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consensus AACCATACACTGCCACTTGGGCATATGTCA-TCTTGGTGACTTTCTCCAAATCATTCTGT

. : . : . : . : . : . :
rJMFF009D04+ GCTCCTGTAGATATCTTCCCCAGCATAACCTGCTCAGATGCTCGACCACCAAGTGTCATG
rJMSF053G09+ GCTCCTGTAGATATCTTCCCCAGCATAACCTGCTCAGATGCTCGACCACCAAGTGTCATG
JMFS069A07- GCTCCTGTAGATATCTTCCCCAGCATAACCTGCTCAGATGCTCGACCACCAAGTGTCATG
rJMFF034P23+ GCTCCTGTAGATATCTTCCCCAGCATAACCTGCTCAGATGCTCGACCACCAAGTGTCATG
rJMSF032D11+ GCTCCTGTAGATATCTTCCCCAGCATAACCTGCTCAGATGCTCGACCACCAAGTGTCATG
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consensus GCTCCTGTAGATATCTTCCCCAGCATAACCTGCTCAGATGCTCGACCACCAAGTGTCATG

. : . : . : . : . : . :
rJMFF009D04+ CATGTCAT--CAAAGAGTTGTTCTTTTGTCATCAAAAGATTTTCATTAGGAACATATTGA
rJMSF053G09+ CATGTCATATCAAAGAGTTGTTCTTTTGTCATCAAAAGATTTTCATTAGGAACATATTGA
JMFS069A07- CATGTCATATCAAAGAGTTGTTCTTTTGTCATCAAAAGATTTTCATTAGGAACATATTGA
rJMFF034P23+ CATGTCATATCAAAGAGTTGTTCTTTTGTCA
rJMSF032D11+ CATGTCATATCAAAGAGTTGTTCTTTTGTCATCAAAAGATTTTCATTAGGAACATATTGA
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consensus CATGTCATATCAAAGAGTTGTTCTTTTGTCATCAAAAGATTTTCATTAGGAACATATTGA

. : . : . : . : . : . :
rJMFF009D04+ GCAA
rJMSF053G09+ GCAAACCCAAGGGCTGCAGTACCACGTGGAACAATTGTCACTTTGAGCAATGGTTCTGCA
JMFS069A07- GCAAACCCAAGGGCTGCAGTACCACGTGGAACAATTGTCACTTTGAGCAATGGTTCTGCA
rJMSF032D11+ GCAAACCCAAGGGCTGCAGTACCACGTGGAACAATTGTCACTTTGAGCAATGGTTCTGCA
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consensus GCAAACCCAAGGGCTGCAGTACCACGTGGAACAATTGTCACTTTGAGCAATGGTTCTGCA

. : . : . : . : . : . :
rJMSF053G09+ TGTTCCAAGAACCAACCAGCAACTGCATGGCCAGATTCATGGTAAGCAACTGTTCTCCTT
JMFS069A07- TGTTCCAAGAACCAACCAGCAACTGCATGGCCAGATTCATGGTAAGCAACTGTTCTCCTT
rJMSF032D11+ TGTTCCAAGAACNAACCAGCAACTGCATGGCCAGATNCATGGTAAGCANCTGTTCTCCTT
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consensus TGTTCCAAGAACCAACCAGCAACTGCATGGCCAGATTCATGGTAAGCAACTGTTCTCCTT

. : . : . : . : . : . :
rJMSF053G09+ TCCAGCTTGCTTATGACCTTGTTCTTCTTCTCAAGACCACCAATTACCCTATCTATTGCT
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consensus TCCAGCTTGCTTATGACCTTGTTCTTCTTCTCAAGACCACCAATTACCCTATCTATTGCT

. : . : . : . : . : . :
rJMSF053G09+ GACTCAAAAATGGTCCATAGTTATCAGGGT
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consensus GACTCAAAAATGGTCCATAGTTATCAGGGT