Alignment Contig 5549

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF048I18+ CCTCTCAACAAATCTTCAGTACTCTATAAACAAACACAAAAACTACATG-ACCAAAACTG
rJMSF037O18+ AATCTTCAGTACTCTATAAACAAACACAAAAACTACATG-ACCAAAACTG
rJMFF035C14+ G-ACCAAAACTG
rJMFF036P15+ G
rJMSF037F19+ AATCTTCAGTACTCTATAAACAAACACAAAAACTACATGGACCAAAACTG
rJMFF001F14+ AAAACTACATG-ACCAAAACTG
____________________________________________________________
consensus CCTCTCAACAAATCTTCAGTACTCTATAAACAAACACAAAAACTACATG-ACCAAAACTG

. : . : . : . : . : . :
rJMFF048I18+ -TAGCTATGTCAAAAGCTCCATTAAATACAATCAGAAAAGACTGATAAAACCAACCCTTT
rJMSF037O18+ -TAGCTATGTCAAAAGCTCCATTAAATACAATCAGAAAAGACTGATAAAACCAACCCTTT
rJMFF035C14+ -TAGCTATGTCAAAAGCTCCATTAAATACAATCAGAAAAGACTGATAAAACCAACCCTTT
rJMFF036P15+ -TAGCTATGTCAAAAGCTCCATTAAATACAATCAGAAAAGACTGATAAAACCAACCCTTT
rJMSF037F19+ GTAGCTATGTCAAAAGCTCCATTAAATACAATCAGAAAAGACTGATAAAACCAACCCTTT
rJMFF001F14+ -TAGCTATGTCAAAAGCTCCATTAAATACAATCAGAAAAGACTGATAAAACCAACCCTTT
____________________________________________________________
consensus -TAGCTATGTCAAAAGCTCCATTAAATACAATCAGAAAAGACTGATAAAACCAACCCTTT

. : . : . : . : . : . :
rJMFF048I18+ TTATCTATGTGACAAAATTTAAAACCCCATCACCTTCAAGGACAGTTTCTCTAATGGTTC
rJMSF037O18+ TTATCTATGTGACAAAATTTAAAACCCCATCACCTTCAAGGACAGTTTCTCTAATGGTTC
rJMFF035C14+ TTATCTATGTGACAAAATTTAAAACCCCATCACCTTCAAGGACAGTTTCTCTAATGGTTC
rJMFF036P15+ TTATCTATGTGACAAAATTTAAAACCCCATCACCTTCAAGGACAGTTTCTCTAATGGTTC
rJMSF037F19+ TTATCTATGTGACAAAATTTAAAACCCCATCACCTTCAAGGACAGTTTCTCTAATGGTTC
rJMFF001F14+ TTATCTATGTGACAAAATTTAAAACCCCATCACCTTCAAGGACAGTTTCTCTAATGGTTC
____________________________________________________________
consensus TTATCTATGTGACAAAATTTAAAACCCCATCACCTTCAAGGACAGTTTCTCTAATGGTTC

. : . : . : . : . : . :
rJMFF048I18+ TAAAGCGCTTGGAAAAAACTTTCTGGCAAACAGATAACAGATTTGTGTCTTCCCACGATT
rJMSF037O18+ TAAAGCGCTTGGAAAAAACTTTCTGGCAAACAGATAACAGATTTGTGTCTTCCCACGATT
rJMFF035C14+ TAAAGCGCTTGGAAAAAACTTTCTGGCAAACAGATAACAGATTTGTGTCTTCCCACGATT
rJMFF036P15+ TAAAGCGCTTGGAAAAAACTTTCTGGCAAACAGATAACAGATTTGTGTCTTCCCACGATT
rJMSF037F19+ TAAAGCGCTTGGAAAAAACTTTCTGGCAAACAGATAACAGATTTGTGTCTTCCCACGATT
rJMFF001F14+ TAAAGCGCTTGGAAAAAACTTTCTGGCAAACAGATAACAGATTTGTGTCTTCCCACGATT
____________________________________________________________
consensus TAAAGCGCTTGGAAAAAACTTTCTGGCAAACAGATAACAGATTTGTGTCTTCCCACGATT

. : . : . : . : . : . :
rJMFF048I18+ GTAAGAACACGACGTGCCATTACTCCTTATT
rJMSF037O18+ GTAAGAACACGACGTGCCATTACTCCTTATTGACTGTATGAAGCCTTCGGTAATGTTAGC
rJMFF035C14+ GTAAGAACACGACGTGCCATTACTCCTTATTGACTGTATGAAGCCTTCGGTAATGTTAGC
rJMFF036P15+ GTAAGAACACGACGTGCCATTACTCCTTATTGACTGTATGAAGCCTTCGGTAATGTTAGC
rJMSF037F19+ GTAAGAACACGACGTGCCATTACTCCTTATTGACTGTATGAAGCCTTCGGTAATGTTAGC
rJMFF001F14+ GTAAGAACACGACGTGCCATTACTCCTTATTGACTGTATGAAGCCTTCGGTAATGTTAGC
____________________________________________________________
consensus GTAAGAACACGACGTGCCATTACTCCTTATTGACTGTATGAAGCCTTCGGTAATGTTAGC

. : . : . : . : . : . :
rJMSF037O18+ TGCAGTGTAAGATGCCGGGTGAGGGCCCCCTAATGACCAGTCAACGTAAGTCACACTTCG
rJMFF035C14+ TGCAGTGTAAGATGCCGGGTGAGGGCCCCCTAATGACCAGTCAACGTAAGTCACACTTCG
rJMFF036P15+ TGCAGTGTAAGATGCCGGGTGAGGGCCCCCTAATGACCAGTCAACGTAAGTCACACTTCG
rJMSF037F19+ TGCAGTGTAAGATGCCGGGTGAGGGCCCCCTAATGACCAGTCAACGTAAGTCACACTTCG
rJMFF001F14+ TGCAGTGTAAGATGCCGGGTGAGGGCCCCCTAATGACCAGTCAACGTAAGTCACACTTCG
____________________________________________________________
consensus TGCAGTGTAAGATGCCGGGTGAGGGCCCCCTAATGACCAGTCAACGTAAGTCACACTTCG

. : . : . : . : . : . :
rJMSF037O18+ GTTAGCATTCATATACCCGTGGTGCAGTTGTAGATAGGTGGGAATGTAGTGCTCATCGGG
rJMFF035C14+ GTTAGCATTCATATACCCGTGGTGCAGTTGTACATAGGTGGGAATGTAGTGCTCATCGGG
rJMFF036P15+ GTTAGCATTCATATACCCGTGGTGCAGTTGTAGATAGGTGGGAATGTAGTGCTCATCGGG
rJMSF037F19+ GTTAGCATTCATATACCCGTGGTGCAGTTGTAGATAGGTGGGAATGTAGTGCTCATCGGG
rJMFF001F14+ GTTAGCATTCATATACCCGTGGTGCAGTTGTAGATAGGTGGGAATGTAGTGCTCATCGGG
____________________________________________________________
consensus GTTAGCATTCATATACCCGTGGTGCAGTTGTAGATAGGTGGGAATGTAGTGCTCATCGGG

. : . : . : . : . : . :
rJMSF037O18+ ATAACAGGATGGCCTGCAATACTTCTTGAACATAGCGTAGAATTTGGTTTCTGAGACAAT
rJMFF035C14+ ATAACAGGATGGCCTGCAATACTTCTTGAACATAGCGT
rJMFF036P15+ ATAACAGGATGGCCTGCAATACTTCTTGAACATAGCGTAGAATTTGGTTTCTGAGACAAT
rJMSF037F19+ ATAACAGGATGGCCTGCAATACTTCTTGAACATAGCGTAGAATTTGGTTTCTGAGACAAT
rJMFF001F14+ ATAACAGGATGGCCTGCAATACTTCTTGAACATAGCGTAGAATTTGGTTTCTGAGACAAT
____________________________________________________________
consensus ATAACAGGATGGCCTGCAATACTTCTTGAACATAGCGTAGAATTTGGTTTCTGAGACAAT

. : . : . : . : . : . :
rJMSF037O18+ TATGATGGCCAAAGCACGGTTCATCTCAAACCACTGAGATCCTTTTCGCCATTCATGAAG
rJMFF036P15+ TATGATGGCCAAAGCACGGTTCATCTCAAACCACTGAGATCCTTTTCGCCATTCATGAAG
rJMSF037F19+ TATGATGGCCAAAGCACGGTTCATCTCAAACCACTGAGATCCTTTTCGCCATTCATGAAG
rJMFF001F14+ TATGATGGCCAAAGCACGGTTCATCTCAAACCACTGAGATCCTTTTCGCCATTCATGAAG
____________________________________________________________
consensus TATGATGGCCAAAGCACGGTTCATCTCAAACCACTGAGATCCTTTTCGCCATTCATGAAG

. : . : . : . : . : . :
rJMSF037O18+ TTTGATATCGGGCTTCATGCGAGTGTTGTAGCGACCACGCCCATAACGAGTAGGGTCATC
rJMFF036P15+ TTTGATATCGGGCTTCATGCGAGTGTTGTAGCGACCACGCCCATAACGAGTAGGGTCATC
rJMSF037F19+ TTTGATATCGGGCTTCATGCGAGTGTTGTAGCGACCACGCCCATAACGAGTAGGGTCATC
rJMFF001F14+ TTTGATATCGGGCTTCATGCGAGTGTTGTAGCGACCACGCCCATAACGAGTAGGGTCATC
____________________________________________________________
consensus TTTGATATCGGGCTTCATGCGAGTGTTGTAGCGACCACGCCCATAACGAGTAGGGTCATC

. : . : . : . : . : . :
rJMSF037O18+ ATATGATTCGATGAAGCTGTGGGTTGATTCAGTGAGATATTTGTAGACTGTAGGGAAATC
rJMFF036P15+ ATATGATTCGATGAAGCTGTGGGTTGATTCAGTGAGATATTTGTAGACTGTANGGAAATC
rJMSF037F19+ ATATGATTCGATGAAGCTGTGGGTTGATTCAGTGAGATATTTGTAGACTGTAGGGAAATC
rJMFF001F14+ ATATGATTCGATGAAGCTGTGGGTTGATTCAGTGAGATATTTGTAGACTGTAGGGAAATC
____________________________________________________________
consensus ATATGATTCGATGAAGCTGTGGGTTGATTCAGTGAGATATTTGTAGACTGTAGGGAAATC

. : . : . : . : . : . :
rJMSF037O18+ GTAAACCGGGATACAGCTCTCAGACAGAAGAACAAATCGTTCGTTTGAG
rJMFF036P15+ GTAAACCGGGATACAGCTCTCAG
rJMSF037F19+ GTAAACCGGGATACAGCTCTCAGACAGAAGAACAAATCGTTCGTTTGAG
rJMFF001F14+ GTAAACCGGGATACAGCTCTCAGACAGAAGAACAAATCGTTCGTTTGAGAAGTCTAGTAG
____________________________________________________________
consensus GTAAACCGGGATACAGCTCTCAGACAGAAGAACAAATCGTTCGTTTGAGAAGTCTAGTAG

. : . : . : . : . : . :
rJMFF001F14+ GGCGTTGGCCAAAAGCCGCCTCTCAGCATCCACCAGCGATACTGATCCCCATTCAACATT
____________________________________________________________
consensus GGCGTTGGCCAAAAGCCGCCTCTCAGCATCCACCAGCGATACTGATCCCCATTCAACATT

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rJMFF001F14+ CTGACTTTTAATCTGGCGTTTGTA
____________________________________________________________
consensus CTGACTTTTAATCTGGCGTTTGTA