Alignment Contig 5526

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF045J07+ GGAAATATGTAAAATAGCATAGAGTATTGTAGAAATGTAATAAACAGAGTAGAATTATAT
JMFS111C04- AGAAATGTAATAAACAGAGTAGAATTATAT
rJMSF009P03+ ATAAACAGAGTAGAATTATAT
____________________________________________________________
consensus GGAAATATGTAAAATAGCATAGAGTATTGTAGAAATGTAATAAACAGAGTAGAATTATAT

. : . : . : . : . : . :
rJMFF045J07+ AACCAAATCTCTACACAACACATTCAACACCACAACCTCAGACCACCACCACCATTCAAT
JMFS111C04- AACCAAATCTCTACACAACACATTCAACACCACAACCTCAGACCACCACCACCATTCAAT
rJMSF009P03+ AACCAAATCTCTACACAACACATTCAACACCACAACCTCAGACCACCACCACCATTCAAT
rJMSF035M22+ AATCTCTACACAACACATTCAACACCACAACCTCAGACCACCACCACCATTCAAT
rJMSF014O07+ ACACATTCAACACCACAACCTCAGACCACCACCACCATTCAAT
____________________________________________________________
consensus AACCAAATCTCTACACAACACATTCAACACCACAACCTCAGACCACCACCACCATTCAAT

. : . : . : . : . : . :
rJMFF045J07+ TCTTTTTCTTTTCCTTTACTATACTTTTATTGTTATCACAGCCATGTTCTCTTTCATAAG
JMFS111C04- TCTTTTTCTTTTCCTTTACTATACTTTTATTGTTATCACAGCCATGTTCTCTTTCATAAG
rJMSF009P03+ TCTTTTTCTTTTCCTTTACTATACTTTTATTGTTATCACAGCCATGTTCTCTTTCATAAG
rJMSF035M22+ TCTTTTTCTTTTCCTTTACTATACTTTTATTGTTATCACAGCCATGTTCTCTTTCATAAG
rJMSF014O07+ TCTTTTTCTTTTCCTTTACTATACTTTTATTGTTATCACAGCCATGTTCTCTTTCATAAG
____________________________________________________________
consensus TCTTTTTCTTTTCCTTTACTATACTTTTATTGTTATCACAGCCATGTTCTCTTTCATAAG

. : . : . : . : . : . :
rJMFF045J07+ ACAAAAATCATGTTCTATTAGGAAGCAGGTGACCTCAAACTGTTTCCCAAACTCCATCTT
JMFS111C04- ACAAAAATCATGTTCTATTAGGAAGCAGGTGACCTCAAACTGTTTCCCAAACTCCATCTT
rJMSF009P03+ ACAAAAATCATGTTCTATTAGGAAGCAGGTGACCTCAAACTGTTTCCCAAACTCCATCTT
rJMSF035M22+ ACAAAAATCATGTTCTATTAGGAAGCAGGTGACCTCAAACTGTTTCCCAAACTCCATCTT
rJMSF014O07+ ACAAAAATCATGTTCTATTAGGAAGCAGGTGACCTCAAACTGTTTCCCAAACTCCATCTT
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consensus ACAAAAATCATGTTCTATTAGGAAGCAGGTGACCTCAAACTGTTTCCCAAACTCCATCTT

. : . : . : . : . : . :
rJMFF045J07+ GGCAAAGGGCACTTGCCTAGAAGCCTGCCCATCCAGCAGGTTGGGATGCCGATTTGTTGT
JMFS111C04- GGCAAAGGGCACTTGCCTAGAAGCCTGCCCATCCAGCAGGTTGGGATGCCGATTTGTTGT
rJMSF009P03+ GGCAAAGGGCACTTGCCTAGAAGCCTGCCCATCCAGCAGGTTGGGATGCCGATTTGTTGT
rJMSF035M22+ GGCAAAGGGCACTTGCCTAGAAGCCTGCCCATCCAGCAGGTTGGGATGCCGATTTGTTGT
rJMSF014O07+ GGCAAAGGGCACTTGCCTAGAAGCCTGCCCATCCAGCAGGTTGGGATGCCGATTTGTTGT
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consensus GGCAAAGGGCACTTGCCTAGAAGCCTGCCCATCCAGCAGGTTGGGATGCCGATTTGTTGT

. : . : . : . : . : . :
rJMFF045J07+ CCACGCGCTTGTCGCCAAAACGCTGGGAATTGTTTCGATCACTGAAAGAAGCGTTCATCT
JMFS111C04- CCACGCGCTTGTCGCCAAAACGCTGGGAATTGTTTCGATCACTGAAAGAAGCGTTCATCT
rJMSF009P03+ CCACGCGCTTGTCGCCAAAACGCTGGGAATTGTTTCGATCACTGAAAGAAGCGTTCATCT
rJMSF035M22+ CCACGCGCTTGTCGCCAAAACGCTGGGAATTGTTTCGATCACTGAAAGAAGCGTTCATCT
rJMSF014O07+ CCACGCGCTTGTCGCCAAAACGCTGGGAATTGTTTCGATCACTGAAAGAAGCGTTCATCT
____________________________________________________________
consensus CCACGCGCTTGTCGCCAAAACGCTGGGAATTGTTTCGATCACTGAAAGAAGCGTTCATCT

. : . : . : . : . : . :
rJMFF045J07+ GAGAGGTAGCAGAAGGAACTGCTGTAAAACTATCGGTCCCGAATCCCCAAGCGCTGGCAG
JMFS111C04- GAGAGGTAGCAGAAGGAACTGCTGTAAAACTATCGGTCCCGAATCCCCAAGCGCTGGCAG
rJMSF009P03+ GAGAGGTAGCAGAAGGAACTGCTGTAAAACTATCGGTCCCGAATCCCCAAGCGCTGGCAG
rJMSF035M22+ GAGAGGTAGCAGAAGGAACTGCTGTAAAACTATCGGTCCCGAATCCCCAAGCGCTGGCAG
rJMSF014O07+ GAGAGGTAGCAGAAGGAACTGCTGTAAAACTATCGGTCCCGAATCCCCAAGCGCTGGCAG
____________________________________________________________
consensus GAGAGGTAGCAGAAGGAACTGCTGTAAAACTATCGGTCCCGAATCCCCAAGCGCTGGCAG

. : . : . : . : . : . :
rJMFF045J07+ TAGAATCCTGCGTATTCGGTGGCTGGTTATTCCTTGTTCTCATAGACCGTGGAGTGTTGC
JMFS111C04- TAGAATCCTGCGTATTCGGTGGCTGGTTATTCCTTGTTCTCATAGACCGTGGAGTGTTGC
rJMSF009P03+ TAGAATCCTGCGTATTCGGTGGCTGGTTATTCCTTGTTCTCATAGACCGTGGAGTGTTGC
rJMSF035M22+ TAGAATCCTGCGTATTCGGTGGCTGGTTATTCCTTGTTCTCATAGACCGTGGAGTGTTGC
rJMSF014O07+ TAGAATCCTGCGTATTCGGTGGCTGGTTATTCCTTGTTCTCATAGACCGTGGAGTGTTGC
____________________________________________________________
consensus TAGAATCCTGCGTATTCGGTGGCTGGTTATTCCTTGTTCTCATAGACCGTGGAGTGTTGC

. : . : . : . : . : . :
rJMFF045J07+ TGGGAGGAGGAGTTGTGAACGGTTTAGGACCATCGTCAGCAAAGGCCTGCCATGCCGAGG
JMFS111C04- TGGGAGGAGGAGTTGTGAGCGGTTTAGGACCATCGTCAGCAAAGGCCTGCCATGCCGAGG
rJMSF009P03+ TGGGAGGAGGAGTTGTGAGCGGTTTAGGACCATCGTCAGCAAAGGCCTGCCATGCCGAGG
rJMSF035M22+ TGGGAGGAGGAGTTGTGAGCGGTTTAGGACCATCGTCAGCAAAGGCCTGCCATGCCGAGG
rJMSF014O07+ TGGGAGGAGGAGTTGTGAGCGGTTTAGGACCATCGTCAGCAAAGGCCTGCCATGCCGAGG
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consensus TGGGAGGAGGAGTTGTGAGCGGTTTAGGACCATCGTCAGCAAAGGCCTGCCATGCCGAGG

. : . : . : . : . : . :
rJMFF045J07+ GATCTGGGCTTGAGGAGCTATGGTTCAACAGGCCTTG
JMFS111C04- GATCTGGGCTTGAGGAGCTCTGGTTCAACAGGCCTTGT
rJMSF009P03+ GATCTGGGCTTGAGGAGCTCTGGTTCAACAGGCCTTGTTGCAGTTCCCAGACAGTTCCTT
rJMSF035M22+ GATCTGGGCTTGAGGAGCTCTGGTTCAACAGGCCTTGTTGCAGTTCCCAGACAGNTCCTT
rJMSF014O07+ GATCTGGGCTTGAGGAGCTCTGGTTCAACAGGCCTTGTTGCAGTTCCCAGACAGTTCCTT
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consensus GATCTGGGCTTGAGGAGCTCTGGTTCAACAGGCCTTGTTGCAGTTCCCAGACAGTTCCTT

. : . : . : . : . : . :
rJMSF009P03+ CAATGGTTTCCCTC---TGTGGGGGGGTACTGAATGTTTGACTTTTAGGAGATGATTGGT
rJMSF035M22+ CAATGGTTTCCCTCTGCTGTGGGGGGGTACTGAATGTTTGACTTTTAGGAGATGATTGGT
rJMSF014O07+ CAATGGTTTCCCTCTGCTGTGGGGGGGTACTGAATGTTTGACTTTTAGGAGATGATTGGT
____________________________________________________________
consensus CAATGGTTTCCCTCTGCTGTGGGGGGGTACTGAATGTTTGACTTTTAGGAGATGATTGGT

. : . : . : . : . : . :
rJMSF009P03+ TTCTCAAGGTATCTCGATTTGGTGATGGAGTTTTAGCAGCGAGGGCTTGCTTGAGTTCTT
rJMSF035M22+ TTCTCAAGGTATCTCGATTTGGTGATGGAGTTTTAGCAGCGAGG-CTTGCTTGAGTTCTG
rJMSF014O07+ TTCTCAAGGTATCTCGATTTGGTGATGGAGTTTTAGCAGCGAGGGCTTGCTTGAGTTCTT
____________________________________________________________
consensus TTCTCAAGGTATCTCGATTTGGTGATGGAGTTTTAGCAGCGAGGGCTTGCTTGAGTTCTT

. : . : . : . : . : . :
rJMSF009P03+ GTATCTCCTGCCGCTGTGACCTACATATGGCAGATAGTTTTTCAAATTTCGACGTAATTT
rJMSF035M22+ GTATCTCCTGCCGCTGTGAC
rJMSF014O07+ GTATCTCCTGCCGCTGTGACCTACATATGGCAGATAGTTTTTCAAATTTCGACGTAATTT
____________________________________________________________
consensus GTATCTCCTGCCGCTGTGACCTACATATGGCAGATAGTTTTTCAAATTTCGACGTAATTT

. : . : . : . : . : . :
rJMSF009P03+ CAGCT
rJMSF014O07+ CAGCTTTCTCCATGTTGGTATGTGTTAGCTGTTCCTTCAGCTTTTCAACCTCAGCCTCTA
____________________________________________________________
consensus CAGCTTTCTCCATGTTGGTATGTGTTAGCTGTTCCTTCAGCTTTTCAACCTCAGCCTCTA

. : . : . : . : . : . :
rJMSF014O07+ ATAGATCCTCTTTCC
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consensus ATAGATCCTCTTTCC