Alignment Contig 5520

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF045E08+ ACCCTGGAGAGTTTTTTTTTTTTTTTTCTTTGATACAATCAACACAAATTTCATTAAATC
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consensus ACCCTGGAGAGTTTTTTTTTTTTTTTTCTTTGATACAATCAACACAAATTTCATTAAATC

. : . : . : . : . : . :
rJMFF045E08+ CACAACCCAATTGCAAATCCTCAAGGTGTCTGTCATCCTTTTAATAATTTAATCTATAGG
rJMSF001I04+ CAATTGCAAATCCTCAAGGTGTCTGTCATCCTTTTAATAATTTAATCTATAGG
rJMFF017E18+ CAATTGCAAATCCTCAAGGTGTCTGTCATCCTTTTAATAATTTAATCTATAGG
rJMFF023K16+ CAATTGCAAATCCTCAAGGTGTCTGTCATCCTTTTAATAATTTAATCTATAGG
rJMFF001H17+ ATTGCAAATCCTCAAGGTGTCTGTCATCCTTTTAATAATTTAATCTATAGG
rJMSF008G18+ AGGTGTCTGTCATCCTTTTAATAATTTAATCTATAGG
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consensus CACAACCCAATTGCAAATCCTCAAGGTGTCTGTCATCCTTTTAATAATTTAATCTATAGG

. : . : . : . : . : . :
rJMFF045E08+ ATGATGCAAGGCAGAGCAAGACAGAAAAGGAAGAAGAAAAAATCACAACAAAAAGAAAGA
rJMSF001I04+ ATGATGCAAGGCAGAGCAAGACAGAAAAGGAAGAAGAAAAAATCACAACAAAAAGAAAGA
rJMFF017E18+ ATGATGCAAGGCAGAGCAAGACAGAAAAGGAAGAAGAAAAAATCACAACAAAAAGAAAGA
rJMFF023K16+ ATGATGCAAGGCAGAGCAAGACAGAAAAGGAAGAAGAAAAAATCACAACAAAAAGAAAGA
rJMFF001H17+ ATGATGCAAGGCAGAGCAAGACAGAAAAGGAAGAAGAAAAAATCACAACAAAAAGAAAGA
rJMSF008G18+ ATGATGCAAGGCAGAGCAAGACAGAAAAGGAAGAAGAAAAAATCACAACAAAAAGAAAGA
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consensus ATGATGCAAGGCAGAGCAAGACAGAAAAGGAAGAAGAAAAAATCACAACAAAAAGAAAGA

. : . : . : . : . : . :
rJMFF045E08+ GAGAGAGAGAGAGAGAGAGAGA--------GAAAAATATGAGGATAATAGATAGCGGAAG
rJMSF001I04+ GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAATATGAGGATAATAGATAGCGGAAG
rJMFF017E18+ GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAATATGAGGATAATANATAGCGGAAG
rJMFF023K16+ GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAATATGAGGATAATANATAGCGGAAG
rJMFF001H17+ GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAATATGAGGATAATANATAGCGGAAN
rJMSF008G18+ GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAATATGAGGATAATAGATAGCGGAAG
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consensus GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAATATGAGGATAATAGATAGCGGAAG

. : . : . : . : . : . :
rJMFF045E08+ CTATTCCTCTTTTCATTCCTCGGCATCATCATTATTGACCTTGATCTCCAAGAGACGCTC
rJMSF001I04+ CTATTCCTCTTTTCATTCCTCGGCATCATCATTATTGACCTTGATCTCCAAGAGACGCTC
rJMFF017E18+ CTATTCCTCTTTTCATTCCTCGGCATCATCNTTATTGACCTTGATCTCCAAGAGACGCTC
rJMFF023K16+ CTATTCCTCTTTTCATTCCTCGGCATCATCATTATTGACCTTGATCTCCAAGAGACGCTC
rJMFF001H17+ CTATTCCTCTTTTCATTCCTCGGCATCATCATTATTGACCTTGATCTCCAAGAGACGCTC
rJMSF008G18+ CTATTCCTCTTTTCATTCCTCGGCATCATCATTATTGACCTTGATCTCCAAGAGACGCTC
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consensus CTATTCCTCTTTTCATTCCTCGGCATCATCATTATTGACCTTGATCTCCAAGAGACGCTC

. : . : . : . : . : . :
rJMFF045E08+ AACCGGTTGTCTGCAAATAGGACACCGATTTGTTTGGTACCTCAAAAGTTTTGCACAACC
rJMSF001I04+ ANCCGGNTGTCTGCAAATAGGACACCGATTTGTTTGGTACCTCAAAAGTTTTGCACANCC
rJMFF017E18+ ANCCGGNTGTCTGCAAATANGACACCGATTTGTTTGGTACCTCAAAAGTTTTGCACANCC
rJMFF023K16+ ANCCGGNTGTCTGCAAATANGACACCGATTTGTTTGGTACCTCAAAAGTTTTGCACAACC
rJMFF001H17+ ANCCGGNTGTCTGCAAATANGACACCGATTTGTTTGGTACCTCAAAAGTTTTGCACAACC
rJMSF008G18+ ANCCGGNTGTCTGCAAATAGGACACCGATTTGTTTGGTACCTCAAAAGTTTTGCACAACC
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consensus AACCGGTTGTCTGCAAATAGGACACCGATTTGTTTGGTACCTCAAAAGTTTTGCACAACC

. : . : . : . : . : . :
rJMFF045E08+ ACTACACATACACATGTGCCGACGGGGAAGGACAGTAGTGTCTCGAGGTTCAGAAAGGCA
rJMSF001I04+ ACTACACATACACNTGTGCCGACNGGGAAGGACAGTAGTGTCTCGAGGTTCAGAAAGGCA
rJMFF017E18+ ACTACACATACACNTGTGCCGACAGGGAANGACAGTAGTGTCTCGAGGTTCAGAAAGGNA
rJMFF023K16+ ACTACACATACACNTGTGCCGACAGGGAANGACAGTAGTGTCTCGAGGNTCAGAAAGGNA
rJMFF001H17+ ACTACACATACACATGTGCCGACAGGGAANGACAGTAGTGTCTCGAGGTTCAGAAAGGCA
rJMSF008G18+ ACTACACATACACNTGTGCCGACNGGGAAGGACAGTAGTGTCTCGAGGTTCAGAAAGGCA
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consensus ACTACACATACACATGTGCCGACAGGGAAGGACAGTAGTGTCTCGAGGTTCAGAAAGGCA

. : . : . : . : . : . :
rJMFF045E08+ TATGACGCAGTCCTTCCCAGGATCGTTTCCATCAACTTCACCTTCGATTGAATTTCCAAT
rJMSF001I04+ TATGACGCANTCCTTCCCNGGATCGTTTCCNTCAACTTCACCTTCGANTGAATTTCCANT
rJMFF017E18+ TATGACGCANTCCTTCCCNNGATCGTTTCCATCAACTTCACCTTCGANTGAATTTCCANT
rJMFF023K16+ TATGACGCANTCCTTCCCNNGATCGTTTCCATCAACTTCACCTTCGATTGAATTTCCANT
rJMFF001H17+ TATGACGCANTCCTTCCCNGGATCGTTTCCATCAACTTCACCTTCGATTGAATTTCCANT
rJMSF008G18+ TATGACGCACTCCTTCCCNGGATCGTTTCCNTCAACTTCACCTTCGANTGAATTTCCANT
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consensus TATGACGCACTCCTTCCCAGGATCGTTTCCATCAACTTCACCTTCGATTGAATTTCCAAT

. : . : . : . : . : . :
rJMFF045E08+ CCCATATATCTCCTGCAGTTCATACCTCATACCATTGACCCATAAAATTTGCTTAACCAC
rJMSF001I04+ CCCATATATCTCCTGCAGTTCATACCTCATACCATTGACCCATAANATTTGCTTANCCNC
rJMFF017E18+ CCCATATATCTCCTGCAGTTCATACCTCATACCATTGACCCATAAAATTTGCTTANCCNC
rJMFF023K16+ CCCATATATCTCCTGCAGTTCATACCTCATACCATTGACCCATAAAATTTGCTTANCCAC
rJMFF001H17+ CCCATATATCTCCTGCAGTTCATACCTCATACCATTGACCCATAAAATTTGCTTANCCAC
rJMSF008G18+ CCCATATATCTCCTGCAGTTCATACCTCATACCATTGACCCATAAAATTTGCTTANCCNC
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consensus CCCATATATCTCCTGCAGTTCATACCTCATACCATTGACCCATAAAATTTGCTTAACCAC

. : . : . : . : . : . :
rJMFF045E08+ CCTAATGTGATATTTCCCTTTCTCCTTTTCAAACACCGCTTGTGTTATCTGGGAATTCGT
rJMSF001I04+ CCTANTGTGATATTTCCCTTTCTCCTTTTCAAACACCGCNTGTGTTATCTGGGAATTCNT
rJMFF017E18+ CCTANTGNGATATTTCCCTTTCTCCTTTTCANACACCGCTTGTGTTATCTGGGAATTCNT
rJMFF023K16+ CCTANTGNGATATTTCCCTTTCTCCTTTTCANACACCGCTTGTGTTATCTGGGAATTCNT
rJMFF001H17+ CCTANTGTGATATTTCCCTTTCTCCTTTTCAAACACCGCTTGTGTTATCTGGGAATTCAT
rJMSF008G18+ CCTAGTGTGATATTTCCCTTTCTCCTTTTCANACACCGCNTGTGTTATCTGGGAATTCNT
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consensus CCTAATGTGATATTTCCCTTTCTCCTTTTCAAACACCGCTTGTGTTATCTGGGAATTCAT

. : . : . : . : . : . :
rJMFF045E08+ GGACCCAGACCCAGCGTTTCCATCAACTGATTCATTTTGGGTATCTACGGA
rJMSF001I04+ GGACCCAGACCCAGCGTTTCCATCAACTGATTCATTTTGGGTATCTACGGAGGATGCCTC
rJMFF017E18+ GGACCCANACCCAGCGTTTCCNTCAACTGATTCATTTTGGGTATCTACNGNGGATGCCTC
rJMFF023K16+ GGACCCAGACCCAGCGTTTCCATCAACTGATTCATTTTGGGTATCTACGGAGGATGCCTC
rJMFF001H17+ GGACCCANACCCAGCGTTTCCATCAACTGATTCATTTTGGGTATCTACGGAGGATGCCTC
rJMSF008G18+ GGACCCAGACCCAGCGTTTCCNTCAACTGATTCNTTTTGGGTATCTACGGAGGATGCCTC
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consensus GGACCCAGACCCAGCGTTTCCATCAACTGATTCATTTTGGGTATCTACGGAGGATGCCTC

. : . : . : . : . : . :
rJMSF001I04+ TGCCTTAGTGGCCAGGGGATACACATCCGTCTCACCCTCAGACAACTCTGCTTCCTCAAA
rJMFF017E18+ TGCCTTAGTGGCCNGGGGATACACATCCGTCTCACCCTCAGACAACTCTGCTTCCTCANA
rJMFF023K16+ TGCCTTAGTGGCCAGGGGATACACATCCGTCTCACCCTCAGACAACTCTGCTTCCTCAAA
rJMFF001H17+ TGCCTTAGTGGCCAGGGGATACACATCCGTCTCACCCTCAGACAACTCTGCTTCCTCAAA
rJMSF008G18+ TGCCTTANTGGCCNGGGGATACACATCCGTCTCACCCTCAGACAACTCTGCTTCCTCAAA
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consensus TGCCTTAGTGGCCAGGGGATACACATCCGTCTCACCCTCAGACAACTCTGCTTCCTCAAA

. : . : . : . : . : . :
rJMSF001I04+ CGCTGAAAGGTCNATGCCGGTCCCAGGGGGCTGTCTGAACTTCTGAGCTAAACC
rJMFF017E18+ CGCTGAAA
rJMFF023K16+ CGCTGAAA
rJMFF001H17+ CGCTGA
rJMSF008G18+ CGCTGAAAGGTCANTGCCGGTCCCAGGGGGCTGTCTGAACTTCTGAGCT
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consensus CGCTGAAAGGTCAATGCCGGTCCCAGGGGGCTGTCTGAACTTCTGAGCTAAACC