Alignment Contig 5512

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF044B19+ CCTTATGGCGGATCACCCTGGAGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
____________________________________________________________
consensus CCTTATGGCGGATCACCCTGGAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

. : . : . : . : . : . :
rJMFF044B19+ XXXXXXXGATGAGGTTGATTAAAGCATTAAAGCAAATCATCATCCAAAAGGATATGTCTA
rJMFF049J09+ GATGAGTTTGATTAAAGCATTAAAGCAAATCATCATCCAAAAGGATATGTCTA
rJMFF044I01+ AAGCATTAAAGCAAATCATCATCCAAAAGGATATGTCTA
rJMFF002K23+ AGCATTAAAGCAAATTATCATCCAAAAGGGTATGTCAA
rJMSF002L06+ AGCATTAAAGCAAATCATCATCCAAAAGGATATGTCTA
rJMSF001L13+ GTCTA
rJMFF002G22+ CAAATCATCATCCAAAAGGATATGTCTA
rJMFF034C17+ AAAGGATATGTCTA
rJMSF002C21+ ATCATCATCCAAAAGGATATGTCTA
rJMFF039E12+ AAGGATATGTCTA
rJMSF014I11+ GTCTA
____________________________________________________________
consensus NNNNNNNGATGAGGTTGATTAAAGCATTAAAGCAAATCATCATCCAAAAGGATATGTCTA

. : . : . : . : . : . :
rJMFF044B19+ CAACAATCTAAAACCAACTTTCTGCAGCTACATCAT-------ACATCATAGCAAAACAA
rJMFF049J09+ CAACAATCTAAAACCAACTTTCTGCAGCTACATCAT-------ACATCATAGCAGAGCAA
rJMFF044I01+ CAACAATCTAAAACCAACTTTCTGCAGCTACATCAT-------ACATCATAGCAGAGCAA
rJMFF002K23+ CAACAATCTAAAACCAACTTTCTGCAGCTACATCATTGATCATACATCATATCAGAGCAA
rJMSF002L06+ CAACAATCTAAAACCAACTTTCTGCAGCTACATCAT-------ACATCANAGCAGAGCAA
rJMSF001L13+ CAACAATCTAAAACCAACTTTCTGCAGCTACATCAT-------ACATCATAGCAGAGCAA
rJMFF002G22+ CAACAATCTAAAACCAACTTTCTGCAGCTACATCAT-------ACATCATAGCAGAGCAA
rJMFF001G04+ TACATCAT-------ACATCATAGCAGAGCAA
rJMFF034C17+ CAACAATCTAAAACCAACTTTCTGCAGCTACATCAT-------ACATCATAGCAGAGCAA
rJMSF002C21+ CAACAATCTAAAACCAACTTTCTGCAGCTACATCAT-------ACATCATAGCAGAGCAA
rJMFF039E12+ CAACAATCTAAAACCAACTTTCTGCAGCTACATCAT-------ACATCATAGCAGAGCAA
rJMSF014I11+ CAACAATCTAAAACCAACTTTCTGCAGCTACATCAT-------ACATCATAGCAGAGCAA
____________________________________________________________
consensus CAACAATCTAAAACCAACTTTCTGCAGCTACATCAT-------ACATCATAGCAGAGCAA

. : . : . : . : . : . :
rJMFF044B19+ CTGCTAACCATTTTATTCCCGTTCTTCCCCGGGGGGGCTAAACAATCACGA
rJMFF049J09+ CTGCTAACCATTTTATTCCCGTTCTTCCCCGTGGGGGCTAAACAATCACGAGTCGCTGAT
rJMFF044I01+ CTGCTAACCATTTTATTCCCGTTCTTCCCCGGGGGGGCTAAACAATCACGAGTCGCTGAT
rJMFF002K23+ CTGCTAAACATTTTATTACTGTTTTTCCGCGTGGGGGCTAAACAATCACCAGTCACTGAT
rJMSF002L06+ CTGCTAACCATTTTATTCCCGTTCTTCCCCGTGGGGGCTAAACAATCACGAGTCGCTGAT
rJMSF001L13+ CTGCTAACCATTTTATTCCCGTTCTTCCCCGTGGGGGCTAAACAATCACGAGTCGCTGAT
rJMFF002G22+ CTGCTAACCATTTTATTCCCGTTCTTCCCCGTGGGGGCTAAACAATCACGAGTCGCTGAT
rJMFF001G04+ CTGCTAACCATTTTATTCCCGTTCTTCCCCGNGGGGGCTAAACAATCACGAGTCGNTGAT
rJMFF034C17+ CTGCTAACCATTTTATTCCCGTTCTTCCCCGTGGGGGCTAAACAATCACGAGTCGCTGAT
rJMSF002C21+ CTGCTAACCATTTTATTCCCGTTCTTCCCCGTGGGGGCTAAACAATCACGAGTCGCTGAT
rJMFF039E12+ CTGCTAACCATTTTATTCCCGTTCTTCCCCGTGGGGGCTAAACAATCACGAGTCGCTGAT
rJMSF014I11+ CTGCTAACCATTTTATTCCCGTTCTTCCCCGTGGGGGCTAAACAATCACGAGTCGCTGAT
____________________________________________________________
consensus CTGCTAACCATTTTATTCCCGTTCTTCCCCGTGGGGGCTAAACAATCACGAGTCGCTGAT

. : . : . : . : . : . :
rJMFF049J09+ TCGTTGCAGGCCGGGCATTGAAGTTCCCGCCAGGAAAGACTCGACGAGCGTGAGAGCTAG
rJMFF044I01+ TCCTTGCAGGCCGGGCATTGAAGTTCCCGCCAGGAAAGACTCCACGAGCGTGAGAGCTAA
rJMFF002K23+ TCGTTGCAGGCCGGGCATTGAAGTTCCGGCCAGGAAAGACTCGACGAGTGTGAGAGCTAG
rJMSF002L06+ TCGTTGCAGGCCGGGCATTGAAGTTCCCGCCAGGAAAGACTCGACGAGCGTGAGAGCTAG
rJMSF001L13+ TCGTTGCAGGCCGGGCATTGAAGTTCCCGCCAGGAAAGACTCGACGAGCGTGAGAGCTAG
rJMFF002G22+ TCGTTGCAGGCCGGGCATTGAAGTTCCCGCCAGGAAAGACTCGACGAGCGTGAGAGCTAG
rJMFF001G04+ TCGTTGCANGCCGGGCATTGAAGTTCCCGCCAGGAAAGACTCGACGANCGTGAGAGCTAG
rJMFF034C17+ TCGTTGCAGGCCGGGCATTGAAGTTCCCGCCAGGAAAGACTCGACGAGCGTGAGAGCTAG
rJMSF002C21+ TCGTTGCAGGCCGGGCATTGAAGTTCCCGCCAGGAAAGACTCGACGAGCGTGAGAGCTAG
rJMFF039E12+ TCGTTGCAGGCCGGGCATTGAAGTTCCCGCCAGGAAAGACTCGACGAGCGTGAGAGCTAG
rJMSF014I11+ TCGTTGCAGGCCGGGCATTGAAGTTCCCGCCAGGAAAGACTCGACGAGCGTGAGAGCTAG
____________________________________________________________
consensus TCGTTGCAGGCCGGGCATTGAAGTTCCCGCCAGGAAAGACTCGACGAGCGTGAGAGCTAG

. : . : . : . : . : . :
rJMFF049J09+ TTTGGGCCTATGCAGAGCGACTTCATGGCCTGCTCCTCGTACAGCAACAAACGTCAGGCC
rJMFF044I01+ TTTGGGCCTATGCAAAACGACTTCATGG
rJMFF002K23+ TTTGGGCCTGTGCAGAGGGACTTCGTGGCCTGCTCCTCGTACAACAACAAACGTCAGGCC
rJMSF002L06+ TTTGGGCCTATGCAGAGCGACTTCATGGCCTGCTCCTCGTACAGCAACAAACGTCAGGCC
rJMSF001L13+ TTTGGGCCTATGCAGAGCGACTTCATGGCCTGCTCCTCGTACAGCAACAAACGTCAGGCC
rJMFF002G22+ TTTGGGCCTATGCAGAGCGACTTCATGGCCTGCTCCTCGTACAGCAACAAACGTCAGGCC
rJMFF001G04+ TTTGGGNCTATGCAGAGCGACTTCATGGCCTGCTCCTCGTACAGCAACAAACGTCAGGCC
rJMFF034C17+ TTTGGGCCTATGCAGAGCGACTTTATGGCCTGCTCCTCGTACAGCAACAAACGTCAGGCC
rJMSF002C21+ TTTGGGCCTATGCAGAGCGACTTCATGGCCTGCTCCTCGTACAGCAACAAACGTCAGGCC
rJMFF039E12+ TTTGGGCCTATGCAGAGCGACTTTATGGCCTGCTCCTCGTACAGCAACAAACGTCAGGCC
rJMSF014I11+ TTTGGGCCTATGCAGAGCGACTTCATGGCCTGCTCCTCGTACAGCAACAAACGTCAGGCC
____________________________________________________________
consensus TTTGGGCCTATGCAGAGCGACTTCATGGCCTGCTCCTCGTACAGCAACAAACGTCAGGCC

. : . : . : . : . : . :
rJMFF049J09+ TTCGTATTCTTGTGTCCATCCCCCAACCTGTCCATTGTCATACCAAGGGCGCCAGGGACT
rJMFF002K23+ TTCGTATTCTTGTGTCCATCCCCCAACCTGTCCATTATCATACCAAGGGCGCCATAGGCT
rJMSF002L06+ TTCGTATTCTTGTGTCCATCCCCCAACCTGTCCATTGTCATACCAAGGGCGCCAGGGACT
rJMSF001L13+ TTCGTATTCTTGTGTCCATCCCCCAACCTGTCCATTGTCATACCAAGGGCGCCAGGGACT
rJMFF002G22+ TTCGTATTCTTGTGTCCATCCCCCAACCTGTCCATTGTCATACCAAGGGCGCCAGGGACT
rJMFF001G04+ TTCGTATTCTTGTGTCCATCCCCCAACCTGTCCATTGTCATACCAAGGGCGCCAGGGACT
rJMFF034C17+ TTCGTATTCTTGTGTCCATCCCCCAACCTGTCCATTGTCATACCAAGGGCGCCAGGGACT
rJMSF002C21+ TTCGTATTCTTGTGTCCATCCCCCAACCTGTCCATTGTCATACCAAGGGCGCCAGGGACT
rJMFF039E12+ TTCGTATTCTTGTGTCCATCCCCCAACCTGTCCATTGTCATACCAAGGGCGCCAGGGACT
rJMSF014I11+ TTCGTATTCTTGTGTCCATCCCCCAACCTGTCCATTGTCATACCAAGGGCGCCAGGGACT
____________________________________________________________
consensus TTCGTATTCTTGTGTCCATCCCCCAACCTGTCCATTGTCATACCAAGGGCGCCAGGGACT

. : . : . : . : . : . :
rJMFF049J09+ AACAGTGGGAAGCTTGAGAGCGTCTATGCTGTAACGTGTCGATGTGACAGGGATTACAGC
rJMFF002K23+ AACAGNGGGAAGTTTGAGAGCGTCTATGCAGTACCGTGTCGATGTGACAGGGAATACAGC
rJMSF002L06+ AACAGTGGGAAGCTTGAGAGCGTCTATGCTGTAACGTGTCGATGTGACAGGGATTACAGC
rJMSF001L13+ AACAGTGGGAAGCTTGAGAGCGTCTATGCTGTAACGTGTCGATGTGACAGGGATTACAGC
rJMFF002G22+ AACAGTGGGAAGCTTGAGAGCGTCTATGCTGTAACGTGTCGATGTGACAGGGATTACAGC
rJMFF001G04+ ANCAGTGGGAAGCTTGAGAGCGTCTATGCTGTAACGTGTCGATGTGACAGGGATTACAGC
rJMFF034C17+ AACAGTGGGAAGCTTGAGAGCGTCTATGCTGTAACGTGTCGATGTGACAGGGATTACAGC
rJMSF002C21+ AACAGTGGGAAGCTTGAGAGCGTCTATGCTGTAACGTGTCGATGTGACAGGGATTACAGC
rJMFF039E12+ AACAGTGGGAAGCTTGAGAGCGTCTATGCTGTAACGTGTCGATGTGACAGGGATTACAGC
rJMSF014I11+ AACAGTGGGAAGCTTGAGAGCGTCTATGCTGTAACGTGTCGATGTGACAGGGATTACAGC
____________________________________________________________
consensus AACAGTGGGAAGCTTGAGAGCGTCTATGCTGTAACGTGTCGATGTGACAGGGATTACAGC

. : . : . : . : . : . :
rJMFF049J09+ GTCTGTATCACCACTGAATACCCAAATGCGAAGCCCTGCAGTTATAAGTTCTTGATAGAC
rJMFF002K23+ GTCTGTATCACCACTGAATACCCAAATGCGAAGCCCTGCACTTATAAGTTCTTGATAGAC
rJMSF002L06+ GTCTGTATCACCACTGAATACCCAAATGCGAAGCCCTGCAGTTATAAGTTCTTGATAGAC
rJMSF001L13+ GTCTGTATCACCACTGAATACCCAAATGCGAAGCCCTGCAGTTATAAGTTCTTGATAGAC
rJMFF002G22+ GTCTGTATCACCACTGAATACCCAAATGCGAAGCCCTGCAGTTATAAGTTCTTGATAGAC
rJMFF001G04+ GTCTGTATCACCACTGAATACCCNAATGCGAAGCCCTGCAGTTATAAGTNCTTGATAGAC
rJMFF034C17+ GTCTGTATCACCACTGAATACCCAAATGCGAAGCCCTGCAGTTATAAGTTCTTGATAGAC
rJMSF002C21+ GTCTGTATCACCACTGAATACCCAAATGCGAAGCCCTGCAGTTATAAGTTCTTGATAGAC
rJMFF039E12+ GTCTGTATCACCACTGAATACCCAAATGCGAAGCCCTGCAGTTATAAGTTCTTGATAGAC
rJMSF014I11+ GTCTGTATCACCACTGAATACCCAAATGCGAAGCCCTGCAGTTATAAGTTCTTGATAGAC
____________________________________________________________
consensus GTCTGTATCACCACTGAATACCCAAATGCGAAGCCCTGCAGTTATAAGTTCTTGATAGAC

. : . : . : . : . : . :
rJMFF049J09+ GTCCAACACA-GTTGTAGGACAATCCTTCCAAAAG-TCATATACCTCATCGCTGCAGGTT
rJMFF002K23+ GTCCAACACAAGTTGTAGGAGAATCCTTCCAAAAACTCATTTACCTCATCGCTGCAGGTT
rJMSF002L06+ GTCCAACACA-GTTGTAGGACAATCCTTCCAAAAG-TCATATACCTCATCGCTGCAGGTT
rJMSF001L13+ GTCCAACACA-GTTGTAGGACAATCCTTCCAAAAG-TCATATACCTCATCGCTGCAGGTT
rJMFF002G22+ GTCCAACACA-GTTGTAGGACAATCCTTCCAAAAG-TCATATACCTCATCGCTGCAGGTT
rJMFF001G04+ GTCCAACACA-GTTGNAGGACAATCCTTCCAAAAG-TCATATACCTCATCGCTGCAGGTT
rJMFF034C17+ GTCCAACACA-GTTGTAGGACAATCCTTCCAAAAG-TCATATACCTCATCGCTGCAGGTT
rJMSF002C21+ GTCCAACACA-GTTGTAGGACAATCCTTCCAAAAG-TCATATACCTCATCGCTGCAGGTT
rJMFF039E12+ GTCCAACACA-GTTGTAGGACAATCCTTCCAAAAG-TCATATACCTCATCGCTGCAGGTT
rJMSF014I11+ GTCCAACACA-GTTGTAGGACAATCCTTCCAAAAG-TCATATACCTCATCGCTGCAGGTT
____________________________________________________________
consensus GTCCAACACA-GTTGTAGGACAATCCTTCCAAAAG-TCATATACCTCATCGCTGCAGGTT

. : . : . : . : . : . :
rJMFF049J09+ ACCCATTCAAACGAGGAATTAGTGGTATGAACATGAAGAGCCTTCTGAACTTC
rJMFF002K23+ GCCCATTTAAACGAGG
rJMSF002L06+ ACCCATTCAAACGAGGAATTAGTGGTATGAACATGAAGAGCCTTCTGAACTTCGGGAAGG
rJMSF001L13+ ACCCATTCAAACGAGGAATTAGTGGTATGAACATGAAGAGCCTTCTGAACTTCGGGAAGG
rJMFF002G22+ ACCCATTCAAACGAGGAATTAGTGGTATGAACATGAAGAGCCTTCTGAACTTCGGGAAGG
rJMFF001G04+ ACCCATTCANACGAGGAATTAGTGGTATGAACATGAAGAGCCTTCTGAACTTC
rJMFF034C17+ ACCCATTCAAACGAGGAATTAGTGGTATGAACATGAAGAGCCTTCTGAACTTCGGGAAGG
rJMSF002C21+ ACCCATTCAAACGAGGAATTAGTGGTATGAACATGAAGAGCCTTCTGAACTTCGGGAAGG
rJMFF039E12+ ACCCATTCAAACGAGGAATTAGTGGTATGAACATGAAGAGCCTTCTGAACTTCGGGAAGG
rJMSF014I11+ ACCCATTCAAACGAGGAATTAGTGGTATGAACATGAAGAGCCTTCTGAACTTCGGGAAGG
____________________________________________________________
consensus ACCCATTCAAACGAGGAATTAGTGGTATGAACATGAAGAGCCTTCTGAACTTCGGGAAGG

. : . : . : . : . : . :
rJMSF002L06+ TTGAANTAGATAGTCGAGTGCCTCTCTGTGCAGGGGTCGTAGATTCTCCTCAGAAGACCA
rJMSF001L13+ TTGAAGTAGATAGTCGAGTGCCTCTCTGTGCAGGGGTCGTAGATTCTCCTCAGAAGACCA
rJMFF002G22+ TTGAAGTAGATAGTCGAGTGCCTCTCTGTGCAGGGGTCGTAGATTCTCCTCAGAAGACCA
rJMFF034C17+ TTGAAGTAGATAGTCGAGTGCCTCTCTGTGCAGGGGTCGTAGATTCTCCTCAGAAGACCA
rJMSF002C21+ TTGAAGTAGATAGTCGAGTGCCTCTCTGTGCAGGGGTCGTAGATTCTCCTCAGAAGACCA
rJMFF039E12+ TTGAAGTAGATAGTCGAGTGCCTCTCTGTGCAGGGGTCGTAGATTCTCCTCAGAAGACCA
rJMSF014I11+ TTGAAGTAGATAGTCGAGTGCCTCTCTGTGCAGGGGTCGTAGATTCTCCTCAGAAGACCA
____________________________________________________________
consensus TTGAAGTAGATAGTCGAGTGCCTCTCTGTGCAGGGGTCGTAGATTCTCCTCAGAAGACCA

. : . : . : . : . : . :
rJMSF002L06+ ACCTTCCTGTCACGTCTTTTTAACACCCTGCTCATTATACTAAAACTTTCTGTACATGTC
rJMSF001L13+ ACCTTCCTGTCACGTCTTTTTAACACCCTGCTCATTATACTAAAACTTTCTGTACATGTC
rJMFF002G22+ ACCTTCCTGTCACGTCTTTTTAACACCCTGCTCATTATACTAAAACTTTCTGTACATGTC
rJMFF034C17+ ACCTTCCTGTCACGTCTTTTTAACACCCTGCTCATTATACTAAAACTTTCTGTACATGTC
rJMSF002C21+ ACCTTCCTGTCACGTCTTTTTAACACCCTGCTCATTATACTAAAACTTTCTGTACATGTC
rJMFF039E12+ ACCTTCCTGTCACGTCTTTTTAACACCCTGCTCATTATACTAAAACTTTCTGTACATGTC
rJMSF014I11+ ACCTTCCTGTCACGTCTTTTTAACACCCTGCTCATTATACTAAAACTTTCTGTACATGTC
____________________________________________________________
consensus ACCTTCCTGTCACGTCTTTTTAACACCCTGCTCATTATACTAAAACTTTCTGTACATGTC

. : . : . : . : . : . :
rJMSF002L06+ GGGG-TGAAGATGCTGTAGGTATCGATATCTCCTAGCTCGTCACTAGCAGTATCTAAAAC
rJMSF001L13+ GGGG-TGAAGATGCTGTAGGTATCGATATCTCCTAGCTCGTCACTAGCAGTATCTAAA
rJMFF002G22+ NGGG-TGAAGATGCTGTANGTATCGATATCTCCTAGCTCGTCACTAGCAGTATCTAAAAC
rJMFF034C17+ GGGGGTGAAGATGCTGTAGGTATCGATATCTCCTAGCTCGTCACTAGCAGTATCTAAAAC
rJMSF002C21+ GGGG-TGAAGATGCTGTAGGTATCGATATCTCCTAGCTCGTCACTAGCAGTATC
rJMFF039E12+ GGGG-TGAAGATGCTGTAGG
rJMSF014I11+ GGGG-TGAAGATGCTGTAGGTATCGATATCTCCTAGCTCGTCACTAGCAGTATCTAAAAC
____________________________________________________________
consensus GGGG-TGAAGATGCTGTAGGTATCGATATCTCCTAGCTCGTCACTAGCAGTATCTAAAAC

. : . : . : . : . : . :
rJMSF002L06+ CTTATTGCACTCCTCCGAGGGGTGGATGAACG
rJMFF002G22+ CTTATTGCAC
rJMFF034C17+ CTTATTGCAC
rJMSF014I11+ CTTATTGCACTCCTCCGANGGGTGGATGAACGATTGGTAGTCGCACAAAAGATTC
____________________________________________________________
consensus CTTATTGCACTCCTCCGAGGGGTGGATGAACGATTGGTAGTCGCACAAAAGATTC