Alignment Contig 5511

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF044B09+ CCTTATGGCGGATCACCCTGGAGAGTTTTTTTTTTTTTTTTGGAAAAAATAATAATTTCT
____________________________________________________________
consensus CCTTATGGCGGATCACCCTGGAGAGTTTTTTTTTTTTTTTTGGAAAAAATAATAATTTCT

. : . : . : . : . : . :
rJMFF044B09+ TCTCATTTATACTCTAGTTATGGGTAATGGGTATAGTTTATATATAAAAAAAGAAAAAAA
rJMFF023M01+ GTTATGGGTAANGGGTATAGTTTATATATAAAAAAAGAAAAAAA
rJMSF002B14+ GGGTATAGTTTATATATAAAAAAAGAAAAAAA
rJMSF023D21+ GGGTATAGTTTATATATAAAAAAAGAAAAAAA
____________________________________________________________
consensus TCTCATTTATACTCTAGTTATGGGTAATGGGTATAGTTTATATATAAAAAAAGAAAAAAA

. : . : . : . : . : . :
rJMFF044B09+ GGAAATTGCAGAAGTAAGAAGCACAAACAACAAGGAGTGGAGTAGCAGTATATACATTAC
rJMFF023M01+ GGAAATTGCAGAAGTAAGAAGCACAAACAACAAGGAGTGGAGTAGCAGTATATACATTAC
rJMSF002B14+ GGAAATTGCAGAAGTAAGAAGCACAAACAACAAGGAGTGGAGTAGCAGTATATACATTAC
rJMSF023D21+ GGAAATTGCAGAAGTAAGAAGCACAAACAACAAGGAGTGGAGTAGCAGTATATACATTAC
rJMSF033I19+ AATTGCAGAAGTAAGAAGCACAAACAACAAGGAGTGGAGTAGCAGTATATACATTAC
____________________________________________________________
consensus GGAAATTGCAGAAGTAAGAAGCACAAACAACAAGGAGTGGAGTAGCAGTATATACATTAC

. : . : . : . : . : . :
rJMFF044B09+ TCTCCACATTGAATTGAAGAAAATTTGCAGAACGGTAACGGGTCGGGTCATCTTCTTTCT
rJMFF023M01+ TCTCCACATTGAATTGAAGAAAATTTGCAGAACGGTAACGGGTCGGGTCATCTTCTTTCT
rJMSF002B14+ TCTCCACATTGAATTGAAGAAAATTTGCAGAACGGTAACGGGTCGGGTCATCTTCTTTCT
rJMSF023D21+ TCTCCACATTGAATTGAAGAAAATTTGCAGAACGGTAACGGGTCGGGTCATCTTCTTTCT
rJMSF033I19+ TCTCCACATTGAATTGAAGAAAATTTGCAGAACGGTAACGGGTCGGGTCATCTTCTTTCT
____________________________________________________________
consensus TCTCCACATTGAATTGAAGAAAATTTGCAGAACGGTAACGGGTCGGGTCATCTTCTTTCT

. : . : . : . : . : . :
rJMFF044B09+ TCAATGTCATTCACGAACTCATTCCAATCCTTTTCCTCTTTGATTCTTTTCATTAGAGTT
rJMFF023M01+ TCAATGTCATTCACGAACTCATTCCAATCCTTTTCCTCTTTGATTCTTTTCATTAGAGTT
rJMSF002B14+ TCAATGTCATTCACGAACTCATTCCAATCCTTTTCCTCTTTGATTCTTTTCATTAGAGTT
rJMSF023D21+ TCAATGTCATTCACGAACTCATTCCAATCCTTTTCCTCTTTGATTCTTTTCATTAGAGTT
rJMSF033I19+ TCAATGTCATTCACGAACTCATTCCAATCCTTTTCCTCTTTGATTCTTTTCATTAGAGTT
____________________________________________________________
consensus TCAATGTCATTCACGAACTCATTCCAATCCTTTTCCTCTTTGATTCTTTTCATTAGAGTT

. : . : . : . : . : . :
rJMFF044B09+ TCAACCGCAATATCAAACGCATCTTTCACCGTCGGGAGCCCCTCTTTCGGCCGTGAATAG
rJMFF023M01+ TCAACCGCAATATCAAACGCATCTTTCACCGTCGGGAGCCCCTCTTTCGGCCGTGAATAG
rJMSF002B14+ TCAACCGCAATATCAAACGCATCTTTCACCGTCGGGAGCCCCTCTTTCGGCCGTGAATAG
rJMSF023D21+ TCAACCGCAATATCAAACGCATCTTTCACCGTCGGGAGCCCCTCTTTCGGCCGTGAATAG
rJMSF033I19+ TCAACCGCAATATCAAACGCATCTTTCACCGTCGGGAGCCCCTCTTTCGGCCGTGAATAG
____________________________________________________________
consensus TCAACCGCAATATCAAACGCATCTTTCACCGTCGGGAGCCCCTCTTTCGGCCGTGAATAG

. : . : . : . : . : . :
rJMFF044B09+ ATCAATTTGGGTATAATTTCCACCACTTTTTCCCTCATTTTTCTGATATCTTCCTTGCTA
rJMFF023M01+ ATCAATTTGGGTATAATTTCCACCACTTTTTCCCTCATTTTTCTGATATCTTCCTTGCTA
rJMSF002B14+ ATCAATTTGGGTATAATTTCCACCACTTTTTCCCTCATTTTTCTGATATCTTCCTTGCTA
rJMSF023D21+ ATCAATTTGGGTATAATTTCCACCACTTTTTCCCTCATTTTTCTGATATCTTCCTTGCTA
rJMSF033I19+ ATCAATTTGGGTATAATTTCCACCACTTTTTCCCTCATTTTTCTGATATCTTCCTTGCTA
____________________________________________________________
consensus ATCAATTTGGGTATAATTTCCACCACTTTTTCCCTCATTTTTCTGATATCTTCCTTGCTA

. : . : . : . : . : . :
rJMFF044B09+ TACTGTTCCAGGATTCCCCGGATGGACGTCCCGTTCCTCACGGCGTCGTGGTCGATGAAC
rJMFF023M01+ TACTGTTCCAGGATTCCCCGGATGGACGTCCCGTTCCTCACGGCGTCGTGGTCGATGAAC
rJMSF002B14+ TACTGTTCCAGGATTCCCCGGATGGACGTCCCGTTCCTCACGGCGTCGTGGTCGATGAAC
rJMSF023D21+ TACTGTTCCAGGATTCCCCGGATGGACGTCCCGTTCCTCACGGCGTCGTGGTCGATGAAC
rJMSF033I19+ TACTGTTCCAGGATTCCCCGGATGGACGTCCCGTTCCTCACGGCGTCGTGGTCGATGAAC
____________________________________________________________
consensus TACTGTTCCAGGATTCCCCGGATGGACGTCCCGTTCCTCACGGCGTCGTGGTCGATGAAC

. : . : . : . : . : . :
rJMFF044B09+ ACCGAGTAGCTCGCCGGGTCCTCCGGCAAGAACCACTGGTACTGAGCGTAGGCCGTTTTG
rJMFF023M01+ ACCGAGTAGCTCGCCGGGTCCTCCGGCAAGAACCACTGGTACTGAGCGTAGGCCGTTTTG
rJMSF002B14+ ACCGAGTAGCTCGCCGGGTCCTCCGGCAAGAACCACTGGTACTGAGCGTAGGCCGTTTTG
rJMSF023D21+ ACCGAGTAGCTCGCCGGGTCCTCCGGCAAGAACCACTGGTACTGAGCGTAGGCCGTTTTG
rJMSF033I19+ ACCGAGTAGCTCGCCGGGTCCTCCGGCAAGAACCACTGGTACTGAGCGTAGGCCGTTTTG
____________________________________________________________
consensus ACCGAGTAGCTCGCCGGGTCCTCCGGCAAGAACCACTGGTACTGAGCGTAGGCCGTTTTG

. : . : . : . : . : . :
rJMFF044B09+ CGCCAGAAAAAGACCGGGACTGAACCGGCGATCATGCAGTCGAAGACCGACCGGCGGGTC
rJMFF023M01+ CGCCAGAAAAAGACCGGGACTGAACCGGCGATCATGCAGTCGAAGACCGACCGGCGGGTC
rJMSF002B14+ CGCCAGAAAAAGACCGGGACTGAACCGGCGATCATGCAGTCGAAGACCGACCGGCGGGTC
rJMSF023D21+ CGCCAGAAAAAGACCGGGACTGAACCGGCGATCATGCAGTCGAAGACCGACCGGCGGGTC
rJMSF033I19+ CGCCAGAAAAAGACCGGGACTGAACCGGCGATCATGCAGTCGAAGACCGACCGGCGGGTC
____________________________________________________________
consensus CGCCAGAAAAAGACCGGGACTGAACCGGCGATCATGCAGTCGAAGACCGACCGGCGGGTC

. : . : . : . : . : . :
rJMFF044B09+ ATGCTGTCGCCTTTGGGCTGCAG
rJMFF023M01+ ATGCTGTCGCCTTTGGGCTGCAGGCAGAAGTCGGAGCTGAGGAACGACGCTTGGATGGCG
rJMSF002B14+ ATGCTGTCGCCTTTGGGCTGCAGGCAGAAGTCGGAGCTGAGGAACGACGCTTGGATGGCG
rJMSF023D21+ ATGCTGTCGCCTTTGGGCTGCAGGCAGAAGTCGGAGCTGAGGAACGACGCTTGGATGGCG
rJMSF033I19+ ATGCTGTCGCCTTTGGGCTGCAGGCAGAAGTCGGAGCTGAGGAACGACGCTTGGATGGCG
____________________________________________________________
consensus ATGCTGTCGCCTTTGGGCTGCAGGCAGAAGTCGGAGCTGAGGAACGACGCTTGGATGGCG

. : . : . : . : . : . :
rJMFF023M01+ GAGGAGCCGTTGGAGCACTGAGTCACCGCGCAGTCGACGACGCGGCACGCGTCGGACTCG
rJMSF002B14+ GAGGAGCCGTTGGAGCACTGAGTCACCGCGCAGTCGACGACGCGGCACGCGTCGGACTCG
rJMSF023D21+ GAGGAGCCGTTGGAGCACTGAGTCACCGCGCAGTCGACGACGCGGCACGCGTCGGACTCG
rJMSF033I19+ GAGGAGCCGTTGGAGCACTGAGTCACCGCGCAGTCGACGACGCGGCACGCGTCGGACTCG
____________________________________________________________
consensus GAGGAGCCGTTGGAGCACTGAGTCACCGCGCAGTCGACGACGCGGCACGCGTCGGACTCG

. : . : . : . : . : . :
rJMFF023M01+ TTGCGGCAGTATTGGATGAGGA
rJMSF002B14+ TTGCGGCAGTATTGGATGAGGAGGGTGCGGAAGTCGCCGGCGATGTCGGCGCGTGTGGCG
rJMSF023D21+ TTGCGGCAGTATTGGATGAGGAGGGTGCGGAAGTCGCCGGCGATGTCGGCGCGTGTGGCG
rJMSF033I19+ TTGCGGCAGTATTGGATGAGGAGGGTGCGGAAGTCGCCGGCGATGTCGGCGCGTGTGGCG
____________________________________________________________
consensus TTGCGGCAGTATTGGATGAGGAGGGTGCGGAAGTCGCCGGCGATGTCGGCGCGTGTGGCG

. : . : . : . : . : . :
rJMSF002B14+ CCGAT
rJMSF023D21+ CCGAT
rJMSF033I19+ CCGATGAAGGTGAAGAGGCTGGTGCGGTTGCGTGTGAGCACGAAGCGCTGCCACTGGCGG
____________________________________________________________
consensus CCGATGAAGGTGAAGAGGCTGGTGCGGTTGCGTGTGAGCACGAAGCGCTGCCACTGGCGG

. : . : . : . : . : . :
rJMSF033I19+ AGC
____________________________________________________________
consensus AGC