Alignment Contig 5491

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF041I07+ AGATAGAATATGATTCTCGTACTAAAATACGACGTCGCCATGCTCGTCTGATCAACAATT
rJMFF004P16+ AAATACGACGTCGCCATGCTCGTCTGATCAACAATT
rJMFF021L17+ AAATACGACGTCGCCATGCTCGTCTGATCAACAATT
rJMFF003M01+ TCGCCATGCTCGTCTGATCAACAATT
____________________________________________________________
consensus AGATAGAATATGATTCTCGTACTAAAATACGACGTCGCCATGCTCGTCTGATCAACAATT

. : . : . : . : . : . :
rJMFF041I07+ TTAATATATTCCTACGAAACTTAAAATGATATTTTAACACCCAAAGTATGAATTAAAGTT
rJMFF004P16+ TTAATATATTCCTACGAAACTTAAAATGATATTTTAACACCCAAAGTATGAATTAAAGTT
rJMFF021L17+ TTAATATATTCCTACGAAACTTAAAATGATATTTTAACACCCAAAGTATGAATTAAAGTT
rJMFF003M01+ TTAATATATTCCTACGAAACTTAAAATGATATTTTAACACCCAAAGTATGAATTAAAGTT
rJMSF034L03+ GTATGAATTAAAGTT
____________________________________________________________
consensus TTAATATATTCCTACGAAACTTAAAATGATATTTTAACACCCAAAGTATGAATTAAAGTT

. : . : . : . : . : . :
rJMFF041I07+ TTGGGTTGCATGCTTGAAACCTGAAGCACCCATCTACTATATAAATATCCAACAAAGATT
rJMFF004P16+ TTGGGTTGCATGCTTGAAACCTGAAGCACCCATCTACTATATAAATATCCAACAAAGATT
rJMFF021L17+ TTGGGTTGCATGCTTGAAACCTGAAGCACCCATCTACTATATAAATATCCAACAAAGATT
rJMFF003M01+ TTGGGTTGCATGCTTGAAACCTGAAGCACCCATCTACTATATAAATATCCAACAAAGATT
rJMSF034L03+ TTGGGTTGCATGCTTGAAACCTGAAGCACCCATCTACTATATAAATATCCAACAAAGATT
____________________________________________________________
consensus TTGGGTTGCATGCTTGAAACCTGAAGCACCCATCTACTATATAAATATCCAACAAAGATT

. : . : . : . : . : . :
rJMFF041I07+ GGACCAAAATACATCTCTGTATGCAAACCTTTATTCTAAACACAAGTTGCCCTAAAGTGT
rJMFF004P16+ GGACCAAAATACATCTCTGTATGCAAACCTTTATTCTAAACACAAGTTGCCCTAAAGTGT
rJMFF021L17+ GGACCAAAATACATCTCTGTATGCAAACCTTTATTCTAAACACAAGTTGCCCTAAAGTGT
rJMFF003M01+ GGACCAAAATACATCTCTGTATGCAAACCTTTATTCTAAACACAAGTTGCCCTAAAGTGT
rJMSF034L03+ GGACCAAAATACATCTCTGTATGCAAACCTTTATTCTAAACACAAGTTGCCCTAAAGTGT
____________________________________________________________
consensus GGACCAAAATACATCTCTGTATGCAAACCTTTATTCTAAACACAAGTTGCCCTAAAGTGT

. : . : . : . : . : . :
rJMFF041I07+ TTTGAAGAATGATTACCCCACAAAAACAAAACCCCAAAACACAGCTTCTTTCTTGTTTAG
rJMFF004P16+ TTTGAAGAATGATTACACCACAAAAACAAAACCCCAAAACACAGCTTCTTTCTTGTTTAG
rJMFF021L17+ TTTGAAGAATGATTACACCACAAAAACAAAACCCCAAAACACAGCTTCTTTCTTGTTTAG
rJMFF003M01+ TTTGAAGAATGATTACACCACAAAAACAAAACCCCAAAACACAGCTTCTTTCTTGTTTAG
rJMSF034L03+ TTTGAAGAATGATTACACCACAAAAACAAAACCCCAAAACACAGCTTCTTTCTTGTTTAG
____________________________________________________________
consensus TTTGAAGAATGATTACACCACAAAAACAAAACCCCAAAACACAGCTTCTTTCTTGTTTAG

. : . : . : . : . : . :
rJMFF041I07+ CCTCAGTAAAGCAGCTCCTCAAATACAGGATCAACATTTTGCCCCCATTTCCCATGGTAC
rJMFF004P16+ CCTCAGTAAAGCAGCTCCTCAAATACAGGATCAACATTTTGCCCCCATTTCCCATGGTAC
rJMFF021L17+ CCTCAGTAAAGCAGCTCCTCAAATACAGGATCAACATTTTGCCCCCATTTCCCATGGTAC
rJMFF003M01+ CCTCAGTAAAGCAGCTCCTCAAATACAGGATCAACATTTTGCCCCCATTTCCCATGGTAC
rJMSF034L03+ CCTCAGTAAAGCAGCTCCTCAAATACAGGATCAACATTTTGCCCCCATTTCCCATGGTAC
____________________________________________________________
consensus CCTCAGTAAAGCAGCTCCTCAAATACAGGATCAACATTTTGCCCCCATTTCCCATGGTAC

. : . : . : . : . : . :
rJMFF041I07+ AATTCCAGGAGCTTCTCGGCTGGCGTCACGCCTGTGTTGACGACTTCAGCTACTGCATTC
rJMFF004P16+ AATTCCAGGAGCTTCTCGGCTGGCGTCACGCCTGTGTTGACGACTTCAGCTACTGCATTC
rJMFF021L17+ AATTCCAGGAGCTTCTCGGCTGGCGTCACGCCTGTGTTGACGACTTCAGCTACTGCATTC
rJMFF003M01+ AATTCCAGGAGCTTCTCGGCTGGCGTCACGCCTGTGTTGACGACTTCAGCTACTGCATTC
rJMSF034L03+ AATTCCAGGAGCTTCTCGGCTGGCGTCACGCCTGTGTTGACGACTTCAGCTACTGCATTC
____________________________________________________________
consensus AATTCCAGGAGCTTCTCGGCTGGCGTCACGCCTGTGTTGACGACTTCAGCTACTGCATTC

. : . : . : . : . : . :
rJMFF041I07+ AGAAACCCGGTTTCCTTATAGCCTCTTCTTTCCAGACCTCCTTTCGCCAAG
rJMFF004P16+ AGAAACCCGGTTTCCTTATAGCCTCTTCTTTCCAGACCTCCTTTCGCCAAGTGCAGAACA
rJMFF021L17+ AGAAACCCGGTTTCCTTATAGCCTCTTCTTTCCAGACCTCCTTTCGCCAAGTGCAGAACA
rJMFF003M01+ AGAAACCCGGTTTCCTTATAGCCTCTTCTTTCCAGACCTCCTTTCGCCAAGTGCAGAACA
rJMSF034L03+ AGAAACCCGGTTTCCTTATAGCCTCTTCTTTCCAGACCTCCTTTCGCCAAGTGCAGAACA
____________________________________________________________
consensus AGAAACCCGGTTTCCTTATAGCCTCTTCTTTCCAGACCTCCTTTCGCCAAGTGCAGAACA

. : . : . : . : . : . :
rJMFF004P16+ TCTTGAGCAACATGCTTGAGCAAACCGTCTCGAAATGGTGTATTCAAACCACTTTTAGGA
rJMFF021L17+ TCTTGAGCAACATGCTTGAGCAAACCGTCTCGAAATGGTGTATTCAAACCACTTTTAGGA
rJMFF003M01+ TCTTGAGCAACATGCTTGAGCAAACCGTCTCGAAATGGTGTATTCAAACCACTTTTAGGA
rJMSF034L03+ TCTTGAGCAACATGCTTGAGCAAACCGTCTCGAAATGGTGTATTCAAACCACTTTTAGGA
____________________________________________________________
consensus TCTTGAGCAACATGCTTGAGCAAACCGTCTCGAAATGGTGTATTCAAACCACTTTTAGGA

. : . : . : . : . : . :
rJMFF004P16+ ACCTTATTCCTTAACATCTCTCGTTCTCCCATAGTCCAATCTGCTGTCATGTCCAGAACA
rJMFF021L17+ ACCTTATTCCTTAACATCTCTCGTTCTCCCATAGTCCAATCTGCTGTCATGTCCAGAACA
rJMFF003M01+ ACCTTATTCCTTAACATCTCTCGTTCTCCCATAGTCCAATCTGCTGTCATGTCCAGAACA
rJMSF034L03+ ACCTTATTCCTTAACATCTCTCGTTCTCCCATAGTCCAATCTGCTGTCATGTCCAGAACA
____________________________________________________________
consensus ACCTTATTCCTTAACATCTCTCGTTCTCCCATAGTCCAATCTGCTGTCATGTCCAGAACA

. : . : . : . : . : . :
rJMFF004P16+ CTTTGTAAAGATATATCATCATACAATAAACCAACCCAGAAAGCAGGCAATGCACATAAT
rJMFF021L17+ CTTTGTAAAGATATATCATCATACAATAAACCAACCCAGAAAGCAGGCAATGCACATAAT
rJMFF003M01+ CTTTGTAAAGATATATCATCATACAATAAACCAACCCAGAAAGCAGGCAATGCACATAAT
rJMSF034L03+ CTTTGTAAAGATATATCATCATACAATAAACCAACCCAGAAAGCAGGCAATGCACATAAT
____________________________________________________________
consensus CTTTGTAAAGATATATCATCATACAATAAACCAACCCAGAAAGCAGGCAATGCACATAAT

. : . : . : . : . : . :
rJMFF004P16+ CGCCGCCAAGGTCCTCCATCGGCCCCTCGCATTTCCAGGTACCTTTTAAGTCTCACCTCG
rJMFF021L17+ CGCCGCCAAGGTCCTCCATCGGCCCCTCGCATTTCCAGGTACCTTTTAAGTCTCACCTCG
rJMFF003M01+ CGCCGCCAAGGTCCTCCATCGGCCCCTCGCATTTCCAGGTACCTTTTAAGTCTCACCTCG
rJMSF034L03+ CGCCGCCAAGGTCCTCCATCGGCCCCTCGCATTTCCAGGTACCTTTTAAGTCTCACCTCG
____________________________________________________________
consensus CGCCGCCAAGGTCCTCCATCGGCCCCTCGCATTTCCAGGTACCTTTTAAGTCTCACCTCG

. : . : . : . : . : . :
rJMFF004P16+ GG-AAATATTGNTGTCAAATGGTTCTCC
rJMFF021L17+ GGGAAATATTGTTGTCAAATGGTTCTCCCAGTCATTAAGT
rJMFF003M01+ GGNAAATATTGTTGTCAAATGGTTCTCCCAGTCATTAAGTGTGGGATATTCTCCA
rJMSF034L03+ GG-AAATATTGTTGTCAAATGGTTCTCCCAGTCATTAAGTGTGGGATATTCTCCAGGAAT
____________________________________________________________
consensus GGGAAATATTGTTGTCAAATGGTTCTCCCAGTCATTAAGTGTGGGATATTCTCCAGGAAT

. : . : . : . : . : . :
rJMSF034L03+ AGGAGGCAGTTTCCCCGCCATAAAATCCCTGAAGGACATTCCAGTACAATCAATATACTT
____________________________________________________________
consensus AGGAGGCAGTTTCCCCGCCATAAAATCCCTGAAGGACATTCCAGTACAATCAATATACTT

. : . : . : . : . : . :
rJMSF034L03+ CTT
____________________________________________________________
consensus CTT