Alignment Contig 5449

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF029K06+ AACTTAATTCCAGCAACAGTGTAAGAGTTCAATTCTTGCCACAAAGTGCAAAGAGTGTAC
rJMSF020D05+ GAGTTCAATTCTTGCCACAAAGTGCAAAGAGTGTAC
rJMSF003F05+ GAGTTCAATTCTTGCCACAAAGTGCAAAGAGTGTAC
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consensus AACTTAATTCCAGCAACAGTGTAAGAGTTCAATTCTTGCCACAAAGTGCAAAGAGTGTAC

. : . : . : . : . : . :
rJMFF029K06+ AGTGATGGGTCTTGGGGGTTCATTAGCACAACCACTTCCAATCACAGAGGAAGATCATTT
rJMSF020D05+ AGTGATGGGTCTTGGGGGTTCATTAGCACAACCACTTCCAATCACAGAGGAAGATCATTT
rJMSF003F05+ AGTGATGGGTCTTGGGGGTTCATTAGCACAACCACTTCCAATCACAGAGGAAGATCATTT
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consensus AGTGATGGGTCTTGGGGGTTCATTAGCACAACCACTTCCAATCACAGAGGAAGATCATTT

. : . : . : . : . : . :
rJMFF029K06+ TGCTGCTAATAAACATCTCCCAACATTATGCTTGTCCAGCATAGTTCATGAACTCTGCAA
rJMSF020D05+ TGCTGCTAATAAACATCTCCCAACATTATGCTTGTCCAGCATAGTTCATGAACTCTGCAA
rJMSF003F05+ TGCTGCTAATAAACATCTCCCAACATTATGCTTGTCCAGCATAGTTCATGAACTCTGCAA
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consensus TGCTGCTAATAAACATCTCCCAACATTATGCTTGTCCAGCATAGTTCATGAACTCTGCAA

. : . : . : . : . : . :
rJMFF029K06+ GCTAACATCCATATTGAAATCTTTATTTTAAAGGAGAAAGTGAAACCAGAAATTGTTAAG
rJMSF020D05+ GCTAACATCCATATTGAAATCTTTATTTTAAAGGAGAAAGTGAAACCAGAAATTGTTAAG
rJMSF003F05+ GCTAACATCCATATTGAAATCTTTATTTTAAAGGAGAAAGTGAAACCAGAAATTGTTAAG
rJMFF050P22+ TAACATCCATATTGAAATCTTTATTTTAAAGGAGAAAGTGAAACCAGAAATTGTTAAG
rJMFF026D20+ AAGGAGAAAGTGAAACCAGAAATTGTTAAG
rJMFF031C07+ CAGAAATTGTTAAG
rJMSF036H02+ AG
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consensus GCTAACATCCATATTGAAATCTTTATTTTAAAGGAGAAAGTGAAACCAGAAATTGTTAAG

. : . : . : . : . : . :
rJMFF029K06+ AACTACTTATAACACTGATAACTGATAGCTAAAGTAACCATAAGCTAACATCATAGTGGG
rJMSF020D05+ AACTACTTATAACACTGATAACTGATAGCTAAAGTAACCATAAGCTAACATCATAGTGGG
rJMSF003F05+ AACTACTTATAACACTGATAACTGATAGCTAAAGTAACCATAAGCTAACATCATAGTGGG
rJMFF050P22+ AACTACTTATAACACTGATAACTGATAGCTAAAGTAACCATAAGCTAACATCATAGTGGG
rJMFF026D20+ AACTACTTATAACACTGATAACTGATAGCTAAAGTAACCATAAGCTAACATCATAGTGGG
JMFN008F20- CTGATAGCTAAAGTAACCATAAGCTAACATCATAGTGGG
rJMFF031C07+ AACTACTTATAACACTGATAACTGATAGCTAAAGTAACCATAAGCTAACATCATAGTGGG
rJMSF036H02+ AACTACTTATAACACTGATNACTGATAGCTAAAGTAACCATANGCTAACATCATAGTGGG
rJMFF026F16+ AACTACTTATAACACTGATAACTGATAGCTAAAGTAACCATAAGCTAACATCATAGTGGG
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consensus AACTACTTATAACACTGATAACTGATAGCTAAAGTAACCATAAGCTAACATCATAGTGGG

. : . : . : . : . : . :
rJMFF029K06+ AAAAGCTTTTCCCTAGAACTCAAAGAATGAAATGACACCATAAATCATCATTTGGCACCC
rJMSF020D05+ AAAAGCTTTTCCCTAGAACTCAAAGAATGAAATGACACCATAAATCATCATTTGGCACCC
rJMSF003F05+ AAAAGCTTTTCCCTAGAACTCAAAGAATGAAATGACACCATAAATCATCATTTGGCACCC
rJMFF050P22+ AAAAGCTTTTCCCTAGAACTCAAAGAATGAAATGACACCATAAATCATCATTTGGCACCC
rJMFF026D20+ AAAAGCTTTTCCCTAGAACTCAAAGAATGAAATGACACCATAAATCATCATTTGGCACCC
JMFN008F20- AAAAGCTTTTCCCTAGAACTCAAAGAATGAAATGACACCATAAATCATCATTTGGCACCC
rJMFF031C07+ AAAAGCTTTTCCCTAGAACTCAAAGAATGAAATGACACCATAAATCATCATTTGGCACCC
rJMSF036H02+ AAAAGCTTTTCCCTAGAACTCAAAGAATGAAATGACACCATAAATCATCATTTGGCACCC
rJMFF026F16+ AAAAGCTTTTCCCTAGAACTCAAAGAATGAAATGACACCATAAATCATCATTTGGCACCC
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consensus AAAAGCTTTTCCCTAGAACTCAAAGAATGAAATGACACCATAAATCATCATTTGGCACCC

. : . : . : . : . : . :
rJMFF029K06+ AGCCCTTGTGATTTAGGACGACGTGTTGCGAGTATAGGGGCGGTGATGCCTTGCGAATCT
rJMSF020D05+ AGCCCTTGTGATTTAGGACGACGTGTTGCGAGTATAGGGGCGGTGATGCCTTGCGAATCT
rJMSF003F05+ AGCCCTTGTGATTTAGGACGACGTGTTGCGAGTATAGGGGCGGTGATGCCTTGCGAATCT
rJMFF050P22+ AGCCCTTGTGATTTAGGACGACGTGTTGCGAGTATAGGGGCGGTGATGCCTTGCGAATCT
rJMFF026D20+ AGCCCTTGTGATTTAGGACGACGTGTTGCGAGTATAGGGGCGGTGATGCCTTGCGAATCT
JMFN008F20- AGCCCTTGTGATTTAGGACGACGTGTTGCGAGTATAGGGGCGGTGATGCCTTGCGAATCT
rJMFF031C07+ AGCCCTTGTGATTTAGGACGACGTGTTGCGAGTATAGGGGCGGTGATGCCTTGCGAATCT
rJMSF036H02+ AGCCCTTGTGATTTAGGACGACGTGTTGCGAGTATAGGGGCGGTGATGCCTTGCGAATCT
rJMFF026F16+ AGCCCTTGTGATTTAGGACGACGTGTTGCGAGTATAGGGGCGGTGATGCCTTGCGAATCT
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consensus AGCCCTTGTGATTTAGGACGACGTGTTGCGAGTATAGGGGCGGTGATGCCTTGCGAATCT

. : . : . : . : . : . :
rJMFF029K06+ TTACCAAGTCCTGTGCCTTCAACGAAACCCATCTTCGCCATCATCTTGGATCCAAAACCT
rJMSF020D05+ TTACCAAGTCCTGTGCCTTCAACGAAACCCATCTTCGCCATCATCTTGGATCCAAAACCT
rJMSF003F05+ TTACCAAGTCCTGTGCCTTCAACGAAACCCATCTTCGCCATCATCTTGGATCCAAAACCT
rJMFF050P22+ TTACCAAGTCCTGTGCCTTCAACGAAACCCATCTTCGCCATCATCTTGGATCCAAAACCT
rJMFF026D20+ TTACCAAGTCCTGTGCCTTCAACGAAACCCATCTTCGCCATCATCTTGGATCCAAAACCT
JMFN008F20- TTACCAAGTCCTGTGCCTTCAACGAAACCCATCTTCGCCATCATCTTGGATCCAAAACCT
rJMFF031C07+ TTACCAAGTCCTGTGCCTTCAACGAAACCCATCTTCGCCATCATCTTGGATCCAAAACCT
rJMSF036H02+ TTACCAAGTCCTGTGCCTTCAACGAAACCCATCTTCGCCATCATCTTGGATCCAAAACCT
rJMFF026F16+ TTACCAAGTCCTGTGCCTTCAACGAAACCCATCTTCGCCATCATCTTGGATCCAAAACCT
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consensus TTACCAAGTCCTGTGCCTTCAACGAAACCCATCTTCGCCATCATCTTGGATCCAAAACCT

. : . : . : . : . : . :
rJMFF029K06+ TTTGTGTGATTCTCGAACGATCCAAATCCTGGAGAACCGTACTGGGCTTTTTGGCCTTGA
rJMSF020D05+ TTTGTGTGATTCTCGAACGATCCAAATCCTGGAGAACCGTACTGGGCTTTTTGGCCTTGA
rJMSF003F05+ TTTGTGTGATTCTCGAACGATCCAAATCCTGGAGAACCGTACTGGGCTTTTTGGCCTTGA
rJMFF050P22+ TTTGTGTGATTCTCGAACGATCCAAATCCTGGAGAACCGTACTGGGCTTTTTGGCCTTGA
rJMFF026D20+ TTTGTGTGATTCTCGAACGATCCAAATCCTGGAGAACCGTACTGGGCTTTTTGGCCTTGA
JMFN008F20- TTTGTGTGATTCTCGAACGATCCAAATCCTGGAGAACCGTACTGGGCTTTTTGGCCTTGA
rJMFF031C07+ TTTGTGTGATTCTCGAACGATCCAAATCCTGGAGAACCGTACTGGGCTTTTTGGCCTTGA
rJMSF036H02+ TTTGTGTGATTCTCGAACGATCCAAATCCTGGAGAACCGTACTGGGCTTTTTGGCCTTGA
rJMFF026F16+ TTTGTGTGATTCTCGAACGATCCAAATCCTGGAGAACCGTACTGGGCTTTTTGGCCTTGA
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consensus TTTGTGTGATTCTCGAACGATCCAAATCCTGGAGAACCGTACTGGGCTTTTTGGCCTTGA

. : . : . : . : . : . :
rJMFF029K06+ GATCCTTTTTTACCTGATTTCCTGCTTCTTGTAGGGAGATCCTCGCCAAAGCCAACCGAT
rJMSF020D05+ GATCCTTTTTTACCTGATTTCCTGCTTCTTGTAGGGAGATCCTCGCCAAAGCCAACCGAT
rJMSF003F05+ GATCCTTTTTTACCTGATTTCCTGCTTCTTGTAGGGAGATCCTCGCCAAAGCCAACCGAT
rJMFF050P22+ GATCCTTTTTTACCTGATTTCCTGCTTCTTGTAGGGAGATCCTCGCCAAAGCCAACCGAT
rJMFF026D20+ GATCCTTTTTTACCTGATTTCCTGCTTCTTGTAGGGAGATCCTCGCCAAAGCCAACCGAT
JMFN008F20- GATCCTTTTTTACCTGATTTCCTGCTTCTTGTAGGGAGATCCTCGCCAAAGCCAACCGAT
rJMFF031C07+ GATCCTTTTTTACCTGATTTCCTGCTTCTTGTAGGGAGATCCTCGCCAAAGCCAACCGAT
rJMSF036H02+ GATCCTTTTTTACCTGATTTCCTGCTTCTTGTAGGGAGATCCTCGCCAAAGCCAACCGAT
rJMFF026F16+ GATCCTTTTTTACCTGATTTCCTGCTTCTTGTAGGGAGATCCTCGCCAAAGCCAACCGAT
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consensus GATCCTTTTTTACCTGATTTCCTGCTTCTTGTAGGGAGATCCTCGCCAAAGCCAACCGAT

. : . : . : . : . : . :
rJMFF029K06+ TTANGAGTGGGAGTCTTTGTTTCGTTAGCAGTGCTTGTTTCAGGGACGTCAGCTCCCAAA
rJMSF020D05+ TTAGGAGTGGGAGTCTTTGTTTCGTTAGCAGTGCTTGTTTCAGGGACGTCAGCTCCCAAA
rJMSF003F05+ TTAGGAGTGGGAGTCTTTGTTTCGTTAGCAGTGCTTGTTTCAGGGACGTCAGCTCCCAAA
rJMFF050P22+ TTAGGAGTGGGAGTCTTTGTTTCGTTAGCAGTGCTTGTTTCAGGGACGTCAGCTCCCAAA
rJMFF026D20+ TTANGAGTGGGAGTCTTTGTTTCGTTAGCAGTGCTTGTTTCAGGGACGTCAGCTCCCAAA
JMFN008F20- TTAGGAGTGGGAGTCTTTGTTTCGTTAGCAGTGCTTGTTTCAGGGACGTCAGCTCCCAAA
rJMFF031C07+ TTAGGAGTGGGAGTCTTTGTTTCGTTAGCAGTGCTTGTTTCAGGGACGTCAGCTCCCAAA
rJMSF036H02+ TTAGGAGTGGGAGTCTTTGTTTCGTTAGCAGTGCTTGTTTCAGGGACGTCAGCTCCCAAA
rJMFF026F16+ TTAGGAGTGGGAGTCTTTGTTTCNTTAGCAGTGCTTGTTTCAGGGACGTCAGCTCCCAAA
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consensus TTAGGAGTGGGAGTCTTTGTTTCGTTAGCAGTGCTTGTTTCAGGGACGTCAGCTCCCAAA

. : . : . : . : . : . :
rJMFF029K06+ CCAAGTGCTTTAGGGCGTTGAGAAACTTGGATGGGCTCCGCAATACCCTGTCCATCCTTT
rJMSF020D05+ CCAAGTGCTTTAGGGCGTTGAGAAACTTGGATGGGCTCCGCAATACCCTGTCCATCCTTT
rJMSF003F05+ CCAAGTGCTTTAGGGCGTTGAGAAACTTGGATGGGCTCCGCAATACCCTGTCCATCCTTT
rJMFF050P22+ CCAAGTGCTTTAGGGCGTTGAGAAACTTGGATGGGCTCCGCAATACCCTGTCCATCCTTT
rJMFF026D20+ CCAAGTGCTTTAGGGCGTTGAGAAACTTGGATGGGCTCCGCAATACCCTGTCCATCCTTT
JMFN008F20- CCAAGTGCTTTAGGGCGTTGAGAAACTTGGATGGGCTCCGCAATACCCTGTCCATCCTTT
rJMFF031C07+ CCAAGTGCTTTAGGGCGTTGAGAAACTTGGATGGGCTCCGCAATACCCTGTCCATCCTTT
rJMSF036H02+ CCAAGTGCTTTAGGGCGTTGAGAAACTTGGATGGGCTCCGCAATACCCTGTCCATCCTTT
rJMFF026F16+ CCAAGTGCTTTAGGGCGTTGAGAAACTTGGATGGGCTCCGCAATACCCTGTCCATCCTTT
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consensus CCAAGTGCTTTAGGGCGTTGAGAAACTTGGATGGGCTCCGCAATACCCTGTCCATCCTTT

. : . : . : . : . : . :
rJMFF029K06+ CCTAAACCTCCGCCAGTGAAGCCCATCTTGACCATCATCTTGGAGCCCAAACCGGNTGTG
rJMSF020D05+ CCTAAACCTCCGCCAGTGAAGCCCATCTTGACCATCATCTTGGAGCCNAAACCGGTTGTG
rJMSF003F05+ CCTAAACCTCCGCCAGTGAAGCCCATCTTGACCATCATCTTGGAGCCAAA
rJMFF050P22+ CCTAA-CCTCCGCCAGTGAAGCCCATCTTGACCATCATCTTGG
rJMFF026D20+ CCTAAACCTCCGCCAGTGAAGCCCATCTTGACCATCATCTTGGAGCCAAAACCGGTTGTG
JMFN008F20- CCTAAACCTCCGCCAGTGAAGCCCATCTTGACCATCATCTTGGAGCCAAAACCGGTTGTG
rJMFF031C07+ CCTAAACCTCCGCCAGTGAAGCCCATCTTGACCATCATCTTGGAGCCAAAACCGGTTGTG
rJMSF036H02+ CCTAAACCTCCGCCAGTGAAGCCCATCTTGACCATCATCTTGGAGCCAAAACCGGTTGTG
rJMFF026F16+ CCTAAACCTCCGCCAGTGAAGCCCATCTTGACCATCATCTTGGAGCCAAAACCGGTTGTG
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consensus CCTAAACCTCCGCCAGTGAAGCCCATCTTGACCATCATCTTGGAGCCAAAACCGGTTGTG

. : . : . : . : . : . :
rJMFF029K06+ TG
rJMSF020D05+ TGCAGC
rJMFF026D20+ TGCAGCTCGAATGCACCATAGTTTGTTGAGCTTGATACACATTTCTTTTCATGGCAGCTG
JMFN008F20- TGCAGCTCGAATGCACCATAGTTTGTTGAGCTTGATACACATTTCTTTTCATGGCAGCTG
rJMFF031C07+ TGCAGCTCGAATGCACCATAGTTTGTTGAGCTTGATACACATTTCTTTTCATGGCAGCTG
rJMSF036H02+ TGCAGCTCGAATGCACCATAGTTTGNTGAGCTTGATACACATTTCTTTTCATGGCAGC
rJMFF026F16+ TGCAGCTCGAATGCACCATAGTTTGTTGAGCTTGATACACATTTCTTTTCATGGCAGCTG
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consensus TGCAGCTCGAATGCACCATAGTTTGTTGAGCTTGATACACATTTCTTTTCATGGCAGCTG

. : . : . : . : . : . :
rJMFF026D20+ TCACTTGACTCGGTTGATTCAGTGATTTTCAGCTCAACTTTCTCGGAACTCATTATACCA
JMFN008F20- TCACTTGACTCGGTTGATTCAGTGATTTTCAGCTCAACTTTCTCGGAA
rJMFF031C07+ TCACTTGACTCGGTTGATTCAGTGATT
rJMFF026F16+ TCAC
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consensus TCACTTGACTCGGTTGATTCAGTGATTTTCAGCTCAACTTTCTCGGAACTCATTATACCA

. : . : . : . : . : . :
rJMFF026D20+ CTTGATATAAATGATACG
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consensus CTTGATATAAATGATACG