Alignment Contig 5445

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF028I17+ ATTTTCTTCTCCTCATTAATTGGTATTTCAAACCATATACAAATTAACTCATAGGGAACA
rJMSF052A06+ ATTGGTATTTCAAACCATATACAAATTAACTCATAGGGAACA
rJMSF034M01+ TAGGGAACA
rJMSF013L20+ AAACCATATACAAATTAACTCATAGGGAACA
rJMSF040G09+ AAACCATATACAAATTAACTCATAGGGAACA
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consensus ATTTTCTTCTCCTCATTAATTGGTATTTCAAACCATATACAAATTAACTCATAGGGAACA

. : . : . : . : . : . :
rJMFF028I17+ TATGGTTATAGCACAACAACAAAATTACAATAAGGGAAGAAGAAAAAAAAAGAATGTTTT
rJMSF052A06+ TATGGTTATAGCACAACAACAAAATTACAATAAGGGAAGAAGAAAAAAAAAGAATGTTTT
rJMSF034M01+ TATGGTTATAGCACAACAACAAAATTACAATAAGGGAAGAAGAAAAAAAAAGAATGTTTT
rJMSF013L20+ TATGGTTATAGCACAACAACAAAATTACAATAAGGGAAGAAGAAAAAAAA-GAATGTTTT
rJMSF015A16+ GGTTATAGCACAACAACAAAATTACAATAAGGGAAGAAGAAAAAAAAAGAATGTTTT
rJMSF040G09+ TATGGTTATAGCACAACAACAAAATTACAATAAGGGAAGAAGAAAAAAAAAGAATGTTTT
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consensus TATGGTTATAGCACAACAACAAAATTACAATAAGGGAAGAAGAAAAAAAAAGAATGTTTT

. : . : . : . : . : . :
rJMFF028I17+ AGTTAGCTGCCATACAACGATTCAAGACTCGAGTCAGTAGAAGAATCATACACTCGTACT
rJMSF052A06+ AGTTAGCTGCCATACAACGATTCAAGACTCGAGTCAGTAGAAGAATCATACACTCGTACT
rJMSF034M01+ AGTTAGCTGCCATACAANGATTCNAGACTCGAGTCAGTAGANGAATCATACACTCGTACT
rJMSF013L20+ AGTTAGCTGCCATACAACGATTCAAGACTCGAGTCAGTAGAAGAATCATACACTCGTACT
rJMSF015A16+ AGTTAGCTGCCATACAACGATTCAAGACTCGAGTCAGTAGAAGAATCATACACTCGTACT
rJMSF040G09+ AGTTAGCTGCCATACAACGATTCAAGACTCGAGTCAGTAGAAGAATCATACACTCGTACT
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consensus AGTTAGCTGCCATACAACGATTCAAGACTCGAGTCAGTAGAAGAATCATACACTCGTACT

. : . : . : . : . : . :
rJMFF028I17+ CCTCTGCACATCTTTATCTTCCACTCCTCGAGTAAATGATCTAATCGCCAAGTGCTCTGA
rJMSF052A06+ CCTCTGCACATCTTTATCTTCCACTCCTCGAGTAAATGATCTAATCGCCAAGTGCTCTGA
rJMSF034M01+ CCTCTGCACATCTTTATCTTCCACTCCTCGAGTAAATGATCTAATCGCCAAGTGCTCTGA
rJMSF013L20+ CCTCTGCACATCTTTATCTTCCACTCCTCGAGTAAATGATCTAATCGCCAAGTGCTCTGA
rJMSF015A16+ CCTCTGCACATCTTTATCTTCCACTCCTCGAGTAAATGATCTAATCGCCAAGTGCTCTGA
rJMSF040G09+ CCTCTGCACATCTTTATCTTCCACTCCTCGAGTAAATGATCTAATCGCCAAGTGCTCTGA
JMSF037O23+ TAAATGATCTAATCGCCAAGTGCTCTGA
JMSF028I17+ TAAATGATCTAATCGCCAAGTGCTCTGA
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consensus CCTCTGCACATCTTTATCTTCCACTCCTCGAGTAAATGATCTAATCGCCAAGTGCTCTGA

. : . : . : . : . : . :
rJMFF028I17+ AGCATACGTCATGAAAGATGCCAGAACAATGCCTCCCGCTACCATCAACCCTAACCTTGC
rJMSF052A06+ AGCATACGTCATGAAAGATGCCAGAACAATGCCTCCCGCTACCATCAACCCTAACCTTGC
rJMSF034M01+ AGCATACGTCATGAAAGATGCCAGAACAATGCCTCCCGCTACTATCAACCCTAACCTTGC
rJMSF013L20+ AGCATACGTCATGAAAGATGCCAGAACAATGCCTCCCGCTACCATCAACCCTAACCTTGC
rJMSF015A16+ AGCATACGTCATGAAAGATGCCAGAACAATGCCTCCCGCTACCATCAACCCTAACCTTGC
rJMSF040G09+ AGCATACGTCATGAAAGATGCCAGAACAATGCCTCCCGCTACCATCAACCCTAACCTTGC
JMSF037O23+ AGCATACGTCATGAAAGATGCCAGAACAATGCCTCCCGCTACCATCAACCCTAACCTTGC
JMSF028I17+ AGCATACGTCATGAAAGATGCCAGAACAATGCCTCCCGCTACCATCAACCCTAACCTTGC
____________________________________________________________
consensus AGCATACGTCATGAAAGATGCCAGAACAATGCCTCCCGCTACCATCAACCCTAACCTTGC

. : . : . : . : . : . :
rJMFF028I17+ AAATAGTGATGTGATCCCAAATAGACAAGGAAGTGACGGGGTTAAAATGGCAAGAAACGC
rJMSF052A06+ AAATAGTGATGTGATCCCAAATAGACAAGGAAGTGACGGGGTTAAAATGGCAAGAAACGC
rJMSF034M01+ AAATAGTGATGTGATCCCAANTAGACAAGGAAGTGACGGGGTTAAAATGGCAAGAAACGC
rJMSF013L20+ AAATAGTGATGTGATCCCAAATAGACAAGGAAGTGACGGGGTTAAAATGGCAAGAAACGC
rJMSF015A16+ AAATAGTGATGTGATCCCAAATAGACAAGGAAGTGACGGGGTTAAAATGGCAAGAAACGC
rJMSF040G09+ AAATAGTGATGTGATCCCAAATAGACAAGGAAGTGACGGGGTTAAAATGGCAAGAAACGC
JMSF037O23+ AAATAGTGATGTGATCCCAAATAGACAAGGAAGTGACGGGGTTAAAATGGCAAGAAACGC
JMSF028I17+ AAATAGTGATGTGATCCCAAATAGACAAGGAAGTGACGGGGTTAAAATGGCAAGAAACGC
____________________________________________________________
consensus AAATAGTGATGTGATCCCAAATAGACAAGGAAGTGACGGGGTTAAAATGGCAAGAAACGC

. : . : . : . : . : . :
rJMFF028I17+ CATCCCTAAACCATAGTTCCATGCATCCATGTCACAACATGACTGCCGATGACCTTTTGC
rJMSF052A06+ CATCCCTAAACCATAGTTCCATGCATCCATGTCACAACATGACTGCCGATGACCTTTTGC
rJMSF034M01+ CATCCCTAAACCATAGTTCCATGCATCCATGTCACAACATGACTGCCGATGACCTTTTGC
rJMSF013L20+ CATCCCTAAACCATAGTTCCATGCATCCATGTCACAACATGACTGCCGATGACCTTTTGC
rJMSF015A16+ CATCCCTAAACCATAGTTCCATGCATCCATGTCACAACATGACTGCCGATGACCTTTTGC
rJMSF040G09+ CATCCCTAAACCATAGTTCCATGCATCCATGTCACAACATGACTGCCGATGACCTTTTGC
JMSF037O23+ CATCCCTAAACCATAGTTCCATGCATCCATGTCACAACATGACTGCCGATGACCTTTTGC
JMSF028I17+ CATCCCTAAACCATAGTTCCATGCATCCATGTCACAACATGACTGCCGATGACCTTTTGC
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consensus CATCCCTAAACCATAGTTCCATGCATCCATGTCACAACATGACTGCCGATGACCTTTTGC

. : . : . : . : . : . :
rJMFF028I17+ CGAATCATATGCCAAAGATTTAGGTCTAGAATGACCTGCTTGGTTTCCCGCCATCTTTCC
rJMSF052A06+ CGAATCATATGCCAAAGATTTAGGTCTAGAATGACCTGCTTGGTTTCCCGCCATCTTTCC
rJMSF034M01+ CGAATCATATGCCAAAGATTTAGGTCTAGAATGACCTGCTTGGTTTCCCGCCATCTTTCC
rJMSF013L20+ CGAATCATATGCCAAAGATTTAGGTCTAGAATGACCTGCTTGGTTTCCCGCCATCTTTCC
rJMSF015A16+ CGAATCATATGCCAAAGATTTAGGTCTAGAATGACCTGCTTGGTTTCCCGCCATCTTTCC
rJMSF040G09+ CGAATCATATGCCAAAGATTTAGGTCTAGAATGACCTGCTTGGTTTCCCGCCATCTTTCC
JMSF037O23+ CGAATCATATGCCAAAGATTTAGGTCTAGAATGACCTGCTTGGTTTCCCGCCATCTTTCC
JMSF028I17+ CGAATCATATGCCAAAGATTTAGGTCTAGAATGACCTGCTTGGTTTCCCGCCATCTTTCC
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consensus CGAATCATATGCCAAAGATTTAGGTCTAGAATGACCTGCTTGGTTTCCCGCCATCTTTCC

. : . : . : . : . : . :
rJMFF028I17+ CCAATGCTGGACTAAGTGCAAATAACTTCCAAATGAAAGCAAGAAAAGTGTGAATGTCCA
rJMSF052A06+ CCAATGCTGGACTAAGTGCAAATAACTTCCAAATGAAAGCAAGAAAAGTGTGAATGTCCA
rJMSF034M01+ CCAATGCTGGACTANGTGCAAATAACTTCCAAATGAANGCAAGAAAAGTGTGAATGTCCA
rJMSF013L20+ CCAATGCTGGACTAAGTGCAAATAACTTCCAAATGAAAGCAAGAAAAGTGTGAATGTCCA
rJMSF015A16+ CCAATGCTGGACTAAGTGCAAATAACTTCCAAATGAAAGCAAGAAAAGTGTGAATGTCCA
rJMSF040G09+ CCAATGCTGGACTAAGTGCAAATAACTTCCAAATGAAAGCAAGAAAAGTGTGAATGTCCA
JMSF037O23+ CCAATGCTGGACTAAGTGCAAATAACTTCCAAATGAAAGCAAGAAAAGTGTGAATGTCCA
JMSF028I17+ CCAATGCTGGACTAAGTGCAAATAACTTCCAAATGAAAGCAAGAAAAGTGTGAATGTCCA
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consensus CCAATGCTGGACTAAGTGCAAATAACTTCCAAATGAAAGCAAGAAAAGTGTGAATGTCCA

. : . : . : . : . : . :
rJMFF028I17+ CTCGTACATTAGGATGAGCCCAGTCCAAGGCATTATTTGGCGAGGGATGATCAGAATCGA
rJMSF052A06+ CTCGTACATTAGGATGAGCCCAGTCCAAGGCATTATTTGGCGAGGGATGATCAGAATCGA
rJMSF034M01+ C
rJMSF013L20+ CTCGTACATTAGGATGAGCCCAGTCCAAGGCATTATTTGGCGAGGGATGATCAGAATCGA
rJMSF015A16+ CTCGTACATTAGGATGAGCCCAGTCCAAGGCATTATTTGGCGAGGGATGATCAGAATCGA
rJMSF040G09+ CTCGTACATTAGGATGAGCCCAGTCCAAGGCATTATTTGGCGAGGGATGATCAGAATCGA
JMSF037O23+ CTCGTACATTAGGATGAGCCCAGTCCAAGGCATTATTTGGCGAGGGATGATCAGAATCGA
JMSF028I17+ CTCGTACATTAGGATGAGCCCAGTCCAAGGCATTATTTGGCGAGGGATGATCAGAATCGA
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consensus CTCGTACATTAGGATGAGCCCAGTCCAAGGCATTATTTGGCGAGGGATGATCAGAATCGA

. : . : . : . : . : . :
rJMFF028I17+ TAGCCCAACGGACAAGAAAGCAGCAGCAAAACAGACAAAGATAGACATCCCACCAAGATA
rJMSF052A06+ TAGCCCAACGGACAAGAAAGCAGCAGCAAAACAGACAAAGATAGACATCCCACCAAGATA
rJMSF013L20+ TAGCCCAACGGACAAGAAAGCAGCAGCAAAACAGACAAAGATAGACATCCCACCA-GATA
rJMSF015A16+ TAGCCCAACGGACAAGAAAGCAGCAGCAAAACAGACAAAGATAGACATCCCACCAAGATA
rJMSF040G09+ TAGCCCAACGGACAAGAAAGCAGCAGCAAAACAGACAAAGATAGACATCCCACCAAGATA
JMSF037O23+ TAGCCCAACGGACAAGAAAGCAGCAGCAAAACAGACAAAGATAGACATCCCACCAAGATA
JMSF028I17+ TAGCCCAACGGACAAGAAAGCAGCAGCAAAACAGACAAAGATAGACATCCCACCAAGATA
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consensus TAGCCCAACGGACAAGAAAGCAGCAGCAAAACAGACAAAGATAGACATCCCACCAAGATA

. : . : . : . : . : . :
rJMFF028I17+ AGAAGGCACCTTTAATTGCGCACCGTTTGTTGACTGCTGGTTGGAGCTGATGGT
rJMSF052A06+ AGAAGGCACCTTTAATTGCGCACCGTTTGTTGACTGCTGGTTGGAGCTGATGGTGGACGA
rJMSF013L20+ AGAAGGCACCTTTAATTGCGCACCGTTTGTTGACTGCTGGTTGGAGCTGATGGTGGACGA
rJMSF015A16+ AGAAGGCACCTTTAATTGCGCACCGTTTGTTGACTGCTGGTTGGAGCTGATGGTGGACGA
rJMSF040G09+ AGAAGGCACCTTTAATTGCGCACCGTTTGTTGACTGCTGGTTGGAGCTGATGGTGGACGA
JMSF037O23+ AGAAGGCACCTTTAATTGCGCACCGTTTGTTGACTGCTGGTTGGAGCTGATGGTGGACGA
JMSF028I17+ AGAAGGCACCTTTAATTGCGCACCGTTTGTTGACTGCTGGTTGGAGCTGATGGTGGACGA
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consensus AGAAGGCACCTTTAATTGCGCACCGTTTGTTGACTGCTGGTTGGAGCTGATGGTGGACGA

. : . : . : . : . : . :
rJMSF052A06+ AGGAACCGAAGAGTAAGGAAGGACACCTCCCGCTCTGAACTTGTAGTATATATGCTTAAT
rJMSF013L20+ AGGA
rJMSF015A16+ AGGAACCGAAGAGTAAGGAAGGACACCTCCCGCTCTGAACTTGTAGTATATATGCTTAAT
rJMSF040G09+ AGGAACCGAAGAGTAAGGAAGGACACCTCCCGCTCTGAACTTGTAGTATATATGCTTAAT
JMSF037O23+ AGGAACCGAAGAGTAAGGAAGGACACCTCCCGCTCTGAACTTGTAGTATATATGCTTAAT
JMSF028I17+ AGGAACCGAAGAGTAAGGAAGGACACCTCCCGCTCTGAACTTGTAGTATATATGCTTAAT
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consensus AGGAACCGAAGAGTAAGGAAGGACACCTCCCGCTCTGAACTTGTAGTATATATGCTTAAT

. : . : . : . : . : . :
rJMSF052A06+ ATGATCATAAATTGAGCGTGTCTGTAGATATGACCGATAGTAGGAGAAAAGTACAAGAAA
rJMSF015A16+ ATGATCATAAATTGAGCGTGTCTGTAGATATGACCGATAGTAGGAGAAAAGTACA
rJMSF040G09+ ATGATCATAAATTGAGCGTGTCTGTAGATATGACCGATAGTAGGAGAAAAGTACAAGAAA
JMSF037O23+ ATGATCATAAATTGAGCGTGTCTGTAGATATGACCGATAGTAGGAGAAAAGTACAAGAAA
JMSF028I17+ ATGATCATAAATTGAGCGTGTCTGTAGATATGACCGATAGTAGGAGAAAAGTACAAGAAA
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consensus ATGATCATAAATTGAGCGTGTCTGTAGATATGACCGATAGTAGGAGAAAAGTACAAGAAA

. : . : . : . : . : . :
rJMSF052A06+ TAATGGAAGCAGAAATAGCAACTTGACAATAAATTCATCTTTAGGATTTTTG
rJMSF040G09+ TAATGGAAGCAGAAATAGCAACTTGACAATAAATTCATCTTTAGGATTTTTGCCTCCATG
JMSF037O23+ TAATGGAAGCAGAAATAGCAACTTGACAATAAATTCATCTTTAGGATTTTTG
JMSF028I17+ TAATGGAAGCAGAAATAGAAACTTGACAATAAATTCATCTTTAGGA
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consensus TAATGGAAGCAGAAATAGCAACTTGACAATAAATTCATCTTTAGGATTTTTGCCTCCATG

. : . : . : . : . : . :
rJMSF040G09+ GGTTCCTGGCAG
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consensus GGTTCCTGGCAG