Alignment Contig 5432

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF026L09+ TTTGATATTATTGCATATTCACTTTGTAATTAACATCGCATGCACCCGGATACATAGGCC
rJMFF040O14+ ATATTATTGCATATTCACTTTGTAATTAACATCGCATGCACCCGGATACATAGGCC
rJMFF025L04+ ATATTATTGCATATTCACTTTGTAATTAACATCGCATGCACCCGGATACATAGGCC
rJMFF023C16+ ATTATTGCATATTCACTTTGTAATTAACATCGCATGCACCCGGATACATAGGCC
rJMFF026K10+ ATATTATTGCATATTCACTTTGTAATTAACATCGCATGCACCCGGATACATAGGCC
rJMFF026K09+ CATATTCACTTTGTAATTAACATCGCATGCACCCGGATACATAGGCC
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consensus TTTGATATTATTGCATATTCACTTTGTAATTAACATCGCATGCACCCGGATACATAGGCC

. : . : . : . : . : . :
rJMFF026L09+ ACCCTAAAAATTAACAACGCATGCACCTGCATATACATAGATAAAAATTAAATAGGCCAC
rJMFF040O14+ ACCCTAAAAATTAACAACGCATGCACCTGCATATACATAGATAAAAATTAAATAGGCCAC
rJMFF004M04+ ATAGGCCAC
rJMFF025L04+ ACCCTAAAAATTAACAACGCATGCACCTGCATATACATAGATAAAAATTAAATAGGCCAC
rJMFF023C16+ ACCCTAAAAATTAACAACGCATGCACCTGCATATACATAGATAAAAATTAAATAGGCCAC
rJMFF026K10+ ACCCTAAAAATTAACAACGCATGCACCTGCATATACATAGATAAAAATTAAATAGGCCAC
rJMFF026K09+ ACCCTAAAAATTAACAACGCATGCACCTGCATATACATAGATAAAAATTAAATAGGCCAC
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consensus ACCCTAAAAATTAACAACGCATGCACCTGCATATACATAGATAAAAATTAAATAGGCCAC

. : . : . : . : . : . :
rJMFF026L09+ CCATTATCTATGGGCTCAGTCTCCTAGAACGACTTAATCATCTTCTCTTTTATTTTTTTG
rJMFF040O14+ CCATTATCTATGGGCTCAGTCTCCTAGAACGACTTAATCATCTTCTCTTTTATTTTTTTG
rJMFF004M04+ CCATTATCTATGGGCTCAGTCTCCTAGAACGACTTAATCATCTTCTCTTTTATTTTTTTG
rJMFF025L04+ CCATTATCTATGGGCTCAGTCTCCTAGAACGACTTAATCATCTTCTCTTTTATTTTTTTG
rJMFF023C16+ CCATTATCTATGGGCTCAGTCTCCTAGAACGACTTAATCATCTTCTCTTTTATTTTTTTG
rJMFF026K10+ CCATTATCTATGGGCTCAGTCTCCTAGAACGACTTAATCATCTTCTCTTTTATTTTTTTG
rJMFF026K09+ CCATTATCTATGGGCTCAGTCTCCTAGAACGACTTAATCATCTTCTCTTTTATTTTTTTG
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consensus CCATTATCTATGGGCTCAGTCTCCTAGAACGACTTAATCATCTTCTCTTTTATTTTTTTG

. : . : . : . : . : . :
rJMFF026L09+ ATTGAGAAGATAAACCACATATGTTATCATACAAAAAAGTACTCCATAAATTACAATAGA
rJMFF040O14+ ATTGAGAAGATAAACCACATATGTTATCATACAAAAAAGTACTCCATAAATTACAATAGA
rJMFF004M04+ ATTGAGAAGATAAACCACATATGTTATCATACAAAAAAGTACTCCATAAATTACAATAGA
rJMFF025L04+ ATTGAGAAGATAAACCACATATGTTATCATACAAAAAAGTACTCCATAAATTACAATAGA
rJMFF023C16+ ATTGAGAAGATAAACCACATATGTTATCATACAAAAAAGTACTCCATAAATTACAATAGA
rJMFF026K10+ ATTGAGAAGATAAACCACATATGTTATCATACAAAAAAGTACTCCATAAATTACAATAGA
rJMFF026K09+ ATTGAGAAGATAAACCACATATGTTATCATACAAAAAAGTACTCCATAAATTACAATAGA
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consensus ATTGAGAAGATAAACCACATATGTTATCATACAAAAAAGTACTCCATAAATTACAATAGA

. : . : . : . : . : . :
rJMFF026L09+ AAGATTGTTTGTCACTAGATCAATTAAAAGAGTGTTATCAATTGAACTTAGTCATCTTCT
rJMFF040O14+ AAGATTGTTTGTCACTAGATCAATTAAAAGAGTGTTATCAATTGAACTTAGTCATCTTCT
rJMFF004M04+ AAGATTGTTTGTCACTAGATCAATTAAAAGAGTGTTATCAATTGAACTTAGTCATCTTCT
rJMFF025L04+ AAGATTGTTTGTCACTAGATCAATTAAAAGAGTGTTATCAATTGAACTTAGTCATCTTCT
rJMFF023C16+ AAGATTGTTTGTCACTAGATCAATTAAAAGAGTGTTATCAATTGAACTTAGTCATCTTCT
rJMFF026K10+ AAGATTGTTTGTCACTAGATCAATTAAAAGAGTGTTATCAATTGAACTTAGTCATCTTCT
rJMFF026K09+ AAGATTGTTTGTCACTAGATCAATTAAAAGAGTGTTATCAATTGAACTTAGTCATCTTCT
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consensus AAGATTGTTTGTCACTAGATCAATTAAAAGAGTGTTATCAATTGAACTTAGTCATCTTCT

. : . : . : . : . : . :
rJMFF026L09+ TGATCTCACGTTTGAAAATGAGCATAGATAGGTGAGGCAGAGATATAGGTACCAAAACGC
rJMFF040O14+ TGATCTCACGTTTGAAAATGAGCATAGATAGGTGAGGCAGAGATATAGGTACCAAAACGC
rJMFF004M04+ TGATCTCACGTTTGAAAATGAGCATAGATAGGTGAGGCAGAGATATAGGTACCAAAACGC
rJMFF025L04+ TGATCTCACGTTTGAAAATGAGCATAGATAGGTGAGGCAGAGATATAGGTACCAAAACGC
rJMFF023C16+ TGATCTCACGTTTGAAAATGAGCATAGATAGGTGAGGCAGAGATATAGGTACCAAAACGC
rJMFF026K10+ TGATCTCACGTTTGAAAATGAGCATAGATAGGTGAGGCAGAGATATAGGTACCAAAACGC
rJMFF026K09+ TGATCTCACGTTTGAAAATGAGCATAGATAGGTGAGGCAGAGATATAGGTACCAAAACGC
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consensus TGATCTCACGTTTGAAAATGAGCATAGATAGGTGAGGCAGAGATATAGGTACCAAAACGC

. : . : . : . : . : . :
rJMFF026L09+ TCCTTTCAGTACTGCTATTGCTCTTGGGACGTTCTAAGAATGTAGCCCCGTAAGCGGCAG
rJMFF040O14+ TCCTTTCAGTACTGCTATTGCTCTTGGGACGTTCTAAGAATGTAGCCCCGTAAGCGGCAG
rJMFF004M04+ TCCTTTCAGTACTGCTATTGCTCTTGGGACGTTCTAAGAATGTAGCCCCGTAAGCGGCAG
rJMFF025L04+ TCCTTTCAGTACTGCTATTGCTCTTGGGACGTTCTAAGAATGTAGCCCCGTAAGCGGCAG
rJMFF023C16+ TCCTTTCAGTACTGCTATTGCTCTTGGGACGTTCTAAGAATGTAGCCCCGTAAGCGGCAG
rJMFF026K10+ TCCTTTCAGTACTGCTATTGCTCTTGGGACGTTCTAAGAATGTAGCCCCGTAAGCGGCAG
rJMFF026K09+ TCCTTTCAGTACTGCTATTGCTCTTGGGACGTTCTAAGAATGTAGCCCCGTAAGCGGCAG
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consensus TCCTTTCAGTACTGCTATTGCTCTTGGGACGTTCTAAGAATGTAGCCCCGTAAGCGGCAG

. : . : . : . : . : . :
rJMFF026L09+ TGGCGGAGCCGGCATATATCGCATCCCCCCATCCAAAATCTATCTTCTCCAACCCAATTC
rJMFF040O14+ TGGCGGAGCCGGCATATATCGCATCCCCCCATCCAAAATCTATCTTCTCCAACCCAATTC
rJMFF004M04+ TGGCGGAGCCGGCATATATCGCATCCCCCCATCCAAAATCTATCTTCTCCAACCCAATTC
rJMFF025L04+ TGGCGGAGCCGGCATATATCGCATCCCCCCATCCAAAATCTATCTTCTCCAACCCAATTC
rJMFF023C16+ TGGCGGAGCCGGCATATATCGCATCCCCCCATCCAAAATCTATCTTCTCCAACCCAATTC
rJMFF026K10+ TGGCGGAGCCGGCATATATCGCATCCCCCCATCCAAAATCTATCTTCTCCAACCCAATTC
rJMFF026K09+ TGGCGGAGCCGGCATATATCGCATCCCCCCATCCAAAATCTATCTTCTCCAACCCAATTC
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consensus TGGCGGAGCCGGCATATATCGCATCCCCCCATCCAAAATCTATCTTCTCCAACCCAATTC

. : . : . : . : . : . :
rJMFF026L09+ TTGAAATGTCCGAAACCAAGATGTTCCTCATCACAGACATCCTCGGCCGGCCATTAATCA
rJMFF040O14+ TTGAAATGTCCGAAACCAAGATGTTCCTCATCACAGACATCCTCGGCCGGCCATTAATCA
rJMFF004M04+ TTGAAATGTCCGAAACCAAGATGTTCCTCATCACAGACATCCTCGGCCGGCCATTAATCA
rJMFF025L04+ TTGAAATGTCCGAAACCAAGATGTTCCTCATCACAGACATCCTCGGCCGGCCATTAATCA
rJMFF023C16+ TTGAAATGTCCGAAACCAAGATGTTCCTCATCACAGACATCCTCGGCCGGCCATTAATCA
rJMFF026K10+ TTGAAATGTCCGAAACCAAGATGTTCCTCATCACAGACATCCTCGGCCGGCCATTAATCA
rJMFF026K09+ TTGAAATGTCCGAAACCAAGATGTTCCTCATCACAGACATCCTCGGCCGGCCATTAATCA
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consensus TTGAAATGTCCGAAACCAAGATGTTCCTCATCACAGACATCCTCGGCCGGCCATTAATCA

. : . : . : . : . : . :
rJMFF026L09+ CCAAGAAATCCAGCACCGACTTCACATAATCAGCGCTTACTTTGTTCTTAGCCTCTCTGA
rJMFF040O14+ CCAAGAAATCCAGCACCGACTTCACATAATCAGCGCTTACTTTGTTCTTAGCCTCTCTGA
rJMFF004M04+ CCAAGAAATCCAGCACCGACTTCACATAATCAGCGCTTACTTTGTTCTTAGCCTCTCTGA
rJMFF025L04+ CCAAGAAATCCAGCACCGACTTCACATAATCAGCGCTTACTTTGTTCTTAGCCTCTCTGA
rJMFF023C16+ CCAAGAAATCCAGCACCGACTTCACATAATCAGCGCTTACTTTGTTCTTAGCCTCTCTGA
rJMFF026K10+ CCAAGAAATCCAGCACCGACTTCACATAATCAGCGCTTACTTTGTTCTTAGCCTCTCTGA
rJMFF026K09+ CCAAGAAATCCAGCACCGACTTCACATAATCAGCGCTTACTTTGTTCTTAGCCTCTCTGA
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consensus CCAAGAAATCCAGCACCGACTTCACATAATCAGCGCTTACTTTGTTCTTAGCCTCTCTGA

. : . : . : . : . : . :
rJMFF026L09+ TCAACTCGATGGCATAAGTAATGGGTCTCTCACACAGCAACTTGGCCGTGGTGGCGGCGG
rJMFF040O14+ TCAACTCGATGGCATAAGTAATGGGTCTCTCACACAGCAACTTGGCCGTGGTGGCGGCGG
rJMFF004M04+ TCAACTCGATGGCATAAGTAATGGGTCTCTCACACAGCAACTTGGCCGTG
rJMFF025L04+ TCAACTCGATGGCATAAGTAATGGGTCTCTCACACAGCAACTTGGCCGTGGTGGCGGCGG
rJMFF023C16+ TCAACTCGATGGCATAAGTAATGGGTCTCTCACACAGCAACTTGGCCGTGGTGGCGGCGG
rJMFF026K10+ TCAACTCGATGGCATAAGTAATGGGTCTCTCACACAGCAACTTGGCCGTGGTGGCGGCGG
rJMFF026K09+ TCAACTCGATGGCATAAGTAATGGGTCTCTCACACAGCAACTTGGCCGTGGTGGCGGCGG
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consensus TCAACTCGATGGCATAAGTAATGGGTCTCTCACACAGCAACTTGGCCGTGGTGGCGGCGG

. : . : . : . : . : . :
rJMFF026L09+ ACAGCATTATAATGGCGTTGCCGTAGT
rJMFF040O14+ ACAGCATTATAATGGCGTTGCCGTAGTACCCAGGGTCGAACTTCAGTCCGGCGAAGGATC
rJMFF025L04+ ACAGCATTATAATGGCGTTGCCGTAGTACCCANGGTCGAACTTCAGTCCGGCGAANGATC
rJMFF023C16+ ACAGCATTATAATGGCGTTGCCGTAGTACCCAGGGTCGAACTTCAGTCCGGCGAANGATC
rJMFF026K10+ ACAGCATTATAATGGCGTTGCCGTAGTACCCAGGGTCGAACTTCAGTCCGGCGAAGGATC
rJMFF026K09+ ACAGCATTATAATGGCGTTGCCGTAGTACCCAGGGTCGAACTTCAGTCCGGCGAANGATC
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consensus ACAGCATTATAATGGCGTTGCCGTAGTACCCAGGGTCGAACTTCAGTCCGGCGAAGGATC

. : . : . : . : . : . :
rJMFF040O14+ TCCGGCG
rJMFF025L04+ TCCGGC
rJMFF023C16+ TCCGGCG
rJMFF026K10+ TCCGGCGAATATCCGTGGGGAACGTGACTCGGA
rJMFF026K09+ TCCGGCGAATATCCGTGGGGAACGTGACTCGGA
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consensus TCCGGCGAATATCCGTGGGGAACGTGACTCGGA