Alignment Contig 5429

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF026D08+ CCTTTGTCTAGACTATCCAATACGCCAATACAAATGGTCTTACCCATCTTTCNATTTAAA
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consensus CCTTTGTCTAGACTATCCAATACGCCAATACAAATGGTCTTACCCATCTTTCNATTTAAA

. : . : . : . : . : . :
rJMFF026D08+ CAGATGAGTAAAATAGAGCATTGTATGGGTCAATGAAGTCTTAACTGCCTGCAGTACATT
rJMFF050O07+ GGGTCAATGAAGTCTTAACTGCCTGCAGTACATT
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consensus CAGATGAGTAAAATAGAGCATTGTATGGGTCAATGAAGTCTTAACTGCCTGCAGTACATT

. : . : . : . : . : . :
rJMFF026D08+ TCATAACATAGTGTTCACAAGGTCTAAAGACCAGAGAAATTGTAAAAGAAATAAATGCAT
rJMFF050O07+ TCATAACATAGTGTTCACAAGGTCTAAAGACCAGAGAAATTGTAAAAGAAATAAATGCAT
rJMFF028D16+ TAGTGTTCACAAGGTCTAAAGACCAGAGAAATTGTAAAAGAAATAAATGCAT
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consensus TCATAACATAGTGTTCACAAGGTCTAAAGACCAGAGAAATTGTAAAAGAAATAAATGCAT

. : . : . : . : . : . :
rJMFF026D08+ TGTTAAGGACAAAAGTTTCTCTCCCATAAAGATATTGATCATTCTGACTTCAAACAATGG
rJMFF050O07+ TGTTAAGGACAAAAGTTTCTCTCCCATAAAGATATTGATCATTCTGACTTCAAACAATGG
rJMFF028D16+ TGTTAAGGACAAAAGTTTCTCTCCCATAAAGATATTGATCATTCTGACTTCAAACAATGG
rJMFF018F16+ AAAAGTTTCTCTCCCATAAAGATATTGATCATTCTGACTTCAAACAATGG
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consensus TGTTAAGGACAAAAGTTTCTCTCCCATAAAGATATTGATCATTCTGACTTCAAACAATGG

. : . : . : . : . : . :
rJMFF026D08+ GAACAGGCTGCCTATTGCGATAGCTAATTATCATCCCGGTCATCAGCAGGGCTCCTTTCA
rJMFF050O07+ GAACAGGCTGCCTATTGCGATAGCTAATTATCATCCCGGTCATCAGCAGGGCTCCTTTCA
rJMFF028D16+ GAACAGGCTGCCTATTGCGATAGCTAATTATCATCCCGGTCATCAGCAGGGCTCCTTTCA
rJMFF018F16+ GAACAGGCTGCCTATTGCGATAGCTAATTATCATCCCGGTCATCAGCAGGGCTCCTTTCA
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consensus GAACAGGCTGCCTATTGCGATAGCTAATTATCATCCCGGTCATCAGCAGGGCTCCTTTCA

. : . : . : . : . : . :
rJMFF026D08+ TACCTTGGACTTGGGCTGCTGCCACTGCGACCATTAGCTTCGAAAGGGCTCTCATCATAC
rJMFF050O07+ TACCTTGGACTTGGGCTGCTGCCACTGCGACCATTAGCTTCGAAAGGGCTCTCATCATAC
rJMFF028D16+ TACCTTGGACTTGGGCTGCTGCCACTGCGACCATTAGCTTCGAAAGGGCTCTCATCATAC
rJMFF018F16+ TACCTTGGACTTGGGCTGCTGCCACTGCGACCATTAGCTTCGAAAGGGCTCTCATCATAC
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consensus TACCTTGGACTTGGGCTGCTGCCACTGCGACCATTAGCTTCGAAAGGGCTCTCATCATAC

. : . : . : . : . : . :
rJMFF026D08+ TTCCTAGGAGCTATGCTCCCTCTTTCAGGGCTCGAAGGACTATGGCTTCTTTTCCCCTTA
rJMFF050O07+ TTCCTAGGAGCTATGCTCCCTCTTTCAGGGCTCGAAGGACTATGGCTTCTTTTCCCCTTA
rJMFF028D16+ TTCCTAGGAGCTATGCTCCCTCTTTCAGGGCTCGAAGGACTATGGCTTCTTTTCCCCTTA
rJMFF018F16+ TTCCTAGGAGCTATGCTCCCTCTTTCAGGGCTCGAAGGACTATGGCTTCTTTTCCCCTTA
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consensus TTCCTAGGAGCTATGCTCCCTCTTTCAGGGCTCGAAGGACTATGGCTTCTTTTCCCCTTA

. : . : . : . : . : . :
rJMFF026D08+ NGGCTTCTGTCATAGCCATCTTCTTCTGTCATCACCTTTTCCCTCTTAGAAGGAATATGG
rJMFF050O07+ GGGCTTCTGTCATAGCCATCTTCTTCTGTCATCACCTTTTCCCTCTTAGAAGGAATATGG
rJMFF028D16+ GGGCTTCTGTCATAGCCATCTTCTTCTGTCATCACCTTTTCCCTCTTAGAAGGAATATGG
rJMFF018F16+ GGGCTTCTGTCATAGCCATCTTCTTCTGTCATCACCTTTTCCCTCTTAGAAGGAATATGG
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consensus GGGCTTCTGTCATAGCCATCTTCTTCTGTCATCACCTTTTCCCTCTTAGAAGGAATATGG

. : . : . : . : . : . :
rJMFF026D08+ CTTCGTTTCCCCTTAGGGCTTCTGTCATAGCCATCTTCTTCTGTCATCACCTTTTCCCTC
rJMFF050O07+ CTTCGTTTCCCCTTAGGGCTTCTGTCATAGCCATCTTCTTCTGTCATCACCTTTTCCCTC
rJMFF028D16+ CTTCGTTTCCCCTTAGGGCTTCTGTCATAGCCATCTTCTTCTGTCATCACCTTTTCCCTC
rJMFF018F16+ CTTCGTTTCCCCTTAGGGCTTCTGTCATAGCCATCTTCTTCTGTCATCACCTTTTCCCTC
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consensus CTTCGTTTCCCCTTAGGGCTTCTGTCATAGCCATCTTCTTCTGTCATCACCTTTTCCCTC

. : . : . : . : . : . :
rJMFF026D08+ TTAGAAGGACTATGGCTTCTTTTCCCCTTAGGGCTTCTGCCATAGCCATCTTCTTCTGTC
rJMFF050O07+ TTAGAAGGACTATGGCTTCTTTTCCCCTTAGGGCTTCTGCCATAGCCATCTTCTTCTGTC
rJMFF028D16+ TTAGAAGGACTATGGCTTCTTTTCCCCTTAGGGCTTCTGCCATAGCCATCTTCTTCTGTC
rJMFF018F16+ TTAGAAGGACTATGGCTTCTTTTCCCCTTAGGGCTTCTGCCATAGCCATCTTCTTCTGTC
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consensus TTAGAAGGACTATGGCTTCTTTTCCCCTTAGGGCTTCTGCCATAGCCATCTTCTTCTGTC

. : . : . : . : . : . :
rJMFF026D08+ ATCACCTTTTCCCTCTTAGAAGGAGGGCTTCTGTCATAGTCATCTTGTTCTGTCATTGCC
rJMFF050O07+ ATCACCTTTTCCCTCTTAGAAGGAGGGCTTCTGTCATAGTCATCTTGTTCTGTCATTGCC
rJMFF028D16+ ATCACCTTTTCCCTCTTAGAAGGAGGGCTTCTGTCATAGTCATCTTGTTCTGTCATTGCC
rJMFF018F16+ ATCACCTTTTCCCTCTTAGAAGGAGGGCTTCTGTCATAGTCATCTTGTTCTGTCATTGCC
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consensus ATCACCTTTTCCCTCTTAGAAGGAGGGCTTCTGTCATAGTCATCTTGTTCTGTCATTGCC

. : . : . : . : . : . :
rJMFF026D08+ TTTGCCCTCTTAGAAGGAGGACTTCTGTCATAGNCATCTTGTTCTGTCATTGCCTTTGCC
rJMFF050O07+ TTTGCCC
rJMFF028D16+ TTTGCCCTCTTAGAAGGAGGACTTCTGTCATAGCCATCTTGTTCTGTCATTGCCTTTGCC
rJMFF018F16+ TTTGCCCTCTTAGAAGGAGGACTTCTGTCATAGCCATCTTGTTCTGTCATTGCCTTTGCC
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consensus TTTGCCCTCTTAGAAGGAGGACTTCTGTCATAGCCATCTTGTTCTGTCATTGCCTTTGCC

. : . : . : . : . : . :
rJMFF026D08+ CTCTTANAAGGANGGCTTCTGTCATAGCCATCTTGGTCTGTCATCANCTTTCCCCTCTTA
rJMFF028D16+ CTCTTAAAAGGAGGGCTTCTGTCATAGCCATCTTGGTCTGTCATCACCTTTCCCCTCTTA
rJMFF018F16+ CTCTTAGAAGGAGGGCTTCTGTCATAGCCATCTTGGTCTGTCATCACCTTTCCCCTCTTA
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consensus CTCTTAAAAGGAGGGCTTCTGTCATAGCCATCTTGGTCTGTCATCACCTTTCCCCTCTTA

. : . : . : . : . : . :
rJMFF028D16+ NAANGACTCTCTTCCCTCCGGCTTGGGGGGCTGGCCTC
rJMFF018F16+ GAAGGACTCTCTTCCCTCCGGCTTGGGGGGCTGGCCTCAATGGGGTTTGGGCTGCGCTTC
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consensus GAAGGACTCTCTTCCCTCCGGCTTGGGGGGCTGGCCTCAATGGGGTTTGGGCTGCGCTTC

. : . : . : . : . : . :
rJMFF018F16+ TGTGTTTTANAGGGAGTAGCACTTCTTCGCTCGGGGCTTCTGCTGATTGCAGGGCTCCTG
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consensus TGTGTTTTANAGGGAGTAGCACTTCTTCGCTCGGGGCTTCTGCTGATTGCAGGGCTCCTG

. : . : . : . : . : . :
rJMFF018F16+ GATCTTCTCTCGTGCTCAACTTGTTCTCTCCTTGCAGCCGTTGCANGCGATCTTGACCGG
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consensus GATCTTCTCTCGTGCTCAACTTGTTCTCTCCTTGCAGCCGTTGCANGCGATCTTGACCGG

. : . : . : . : . : . :
rJMFF018F16+ CTATAG
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consensus CTATAG