Alignment Contig 542

                          .    :    .    :    .    :    .    :    .    :    .    :

JMSF001G17+ GGACTGACTACGGCTTCTCTTCGCTATACTGAGTCTCTGATCTCTGTAAATTCACGGAAA
JMSF045G24+ TGACTACGGCTTCTCTTCGCTATACTGAGTCTCTGATCTCTGTAAATTCACGGAAA
JMFF044D03+ TGACTACGGCTTCTCTTCGCTATACTGAGTCTCTGATCTCTGTAAATTCACGGAAA
JMFF031B05+ TGACTACGGCTTCTCTTCGCTATACTGAGTCTCTGATCTCTGTAAATTCACGGAAA
JMFF010K18+ GAGTCTCTGATCTCTGTAAATTCACGGAAA
JMFS055G09+ TCTTCGCTATACTGAGTCTCTGATCTCTGTAAATTCACGGAAA
JMFS137A06+ TTCGCTATACTGAGTCTCTGATCTCTGTAAATTCACGGAAA
JMFN039O03+ TCTTCGCTATACTGAGTCTCTGATCTCTGTAAATTCACGGAAA
JMSF049O02+ ACGGAAA
____________________________________________________________
consensus GGACTGACTACGGCTTCTCTTCGCTATACTGAGTCTCTGATCTCTGTAAATTCACGGAAA

. : . : . : . : . : . :
JMSF001G17+ AGTAGAGATAGAACAAGGAAACCATTTCTGAAAAGCGAGAACAAGAGCTCAATCTGATCA
JMSF045G24+ AGTAGAGATAGAACAAGGAAACCATTTCTGAAAAGCGAGAACAAGAGCTCAATCTGATCA
JMFF044D03+ AGTAGAGATAGAACAAGGAAACCATTTCTGAAAAGCGAGAACAAGAGCTCAATCTGATCA
JMFF031B05+ AGTAGAGATAGAACAAGGAAACCATTTCTGAAAAGCGAGAACAAGAGCTCAATCTGATCA
JMFF010K18+ AGTAGAGATAGAACAAGGAAACCATTTCTGAAAAGCGAGAACAAGAGCTCAATCTGATCA
JMFS055G09+ AGTAGAGATAGAACAAGGAAACCATTTCTGAAAAGCGAGAACAAGAGCTCAATCTGATCA
JMFS137A06+ AGTAGAGATAGAACAAGGAAACCATTTCTGAAAAGCGAGAACAAGAGCTCAATCTGATCA
JMFN039O03+ AGTAGAGATAGAACAAGGAAACCATTTCTGAAAAGCGAGAACAAGAGCTCAATCTGATCA
JMSF049O02+ AGTAGAGATAGAACAAGGAAACCATTTCTGAAAAGCGAGAACAAGAGCTCAATCTGATCA
____________________________________________________________
consensus AGTAGAGATAGAACAAGGAAACCATTTCTGAAAAGCGAGAACAAGAGCTCAATCTGATCA

. : . : . : . : . : . :
JMSF001G17+ TCGAGCAATGGCTGGTGGTGCGTGGACGAGGCGCACGTCCTTGATCGTTTTCGGAATCGT
JMSF045G24+ TCGAGCAATGGCTGGTGGTGCGTGGACGAGGCGCACGTCCTTGATCGTTTTCGGAATCGT
JMFF044D03+ TCGAGCAATGGCTGGTGGTGCGTGGACGAGGCGCACGTCCTTGATCGTTTTCGGAATCGT
JMFF031B05+ TCGAGCAATGGCTGGTGGTGCGTGGACGAGGCGCACGTCCTTGATCGTTTTCGGAATCGT
JMFF010K18+ TCGAGCAATGGCTGGTGGTGCGTGGACGAGGCGCACGTCCTTGATCGTTTTCGGAATCGT
JMFS055G09+ TCGAGCAATGGCTGGTGGTGCGTGGACGAGGCGCACGTCCTTGATCGTTTTCGGAATCGT
JMFS137A06+ TCGAGCAATTGCTGGTGGTGCGTGGACGAGGCGCACGTCCTTGATCGTTTTCGGAATCGT
JMFN039O03+ TCGAGCAATGGCTGGTGGTGCGTGGACGAGGCGCACGTCCTTGATCGTTTTCGGAATCGT
JMSF049O02+ TCGAGCAATGGCTGGTGGTGCGTGGACGAGGCGCACGTCCTTGATCGTTTTCGGAATCGT
____________________________________________________________
consensus TCGAGCAATGGCTGGTGGTGCGTGGACGAGGCGCACGTCCTTGATCGTTTTCGGAATCGT

. : . : . : . : . : . :
JMSF001G17+ TGTGTTCGGGAGCTTATTTGCCTTTTCTATCGCAAAAGAGGAAGCATCCAAATTAGGGAC
JMSF045G24+ TGTGTTCGGGAGCTTATTTGCCTTTTCTATCGCAAAAGAGGAAGCATCCAAATTAGGGAC
JMFF044D03+ TGTGTTCGGGAGCTTATTTGCCTTTTCTATCGCAAAAGAGGAAGCATCCAAATTAGGGAC
JMFF031B05+ TGTGTTCGGGAGCTTATTTGCCTTTTCTATCGCAAAAGAGGAAGCATCCAAATTAGGGAC
JMFF010K18+ TGTGTTCGGGAGCTTATTTGCCTTTTCTATCGCAAAAGAGGAAGCATCCAAATTAGGGAC
JMFS055G09+ TGTGTTCGGGAGCTTATTTGCCTTTTCTATCGCAAAAGAGGAAGCATCCAAATTAGGGAC
JMFS137A06+ TGTGTTCGGGAGCTTATTTGCCTTTTCTATCGCAAAAGAGGAAGCATCCAAATTAGGGAC
JMFN039O03+ TGTGTTCGGGAGCTTATTTGCCTTTTCTATCGCAAAAGAGGAAGCATCCAAATTAGGGAC
JMSF049O02+ TGTGTTCGGGAGCTTATTTGCCTTTTCTATCGCAAAAGAGGAAGCATCCAAATTAGGGAC
____________________________________________________________
consensus TGTGTTCGGGAGCTTATTTGCCTTTTCTATCGCAAAAGAGGAAGCATCCAAATTAGGGAC

. : . : . : . : . : . :
JMSF001G17+ TGTGATCGGAATAGATCTTGGTACAACTTATTCATGTGTTGGAGTTTACAAAGATCAGCG
JMSF045G24+ TGTGATCGGAATAGATCTTGGTACAACTTATTCATGTGTTGGAGTTTACAAAGATCAGCG
JMFF044D03+ TGTGATCGGAATAGATCTTGGTACAACTTATTCATGTGTTGGAGTTTACAAAGATCAGCG
JMFF031B05+ TGTGATCGGAATAGATCTTGGTACAACTTATTCATGTGTTGGAGTTTACAAAGATCAGCG
JMFF010K18+ TGTGATCGGAATAGATCTTGGTACAACTTATTCATGTGTTGGAGTTTACAAAGATCAGCG
JMFS055G09+ TGTGATCGGAATAGATCTTGGTACAACTTATTCATGTGTTGGAGTTTACAAAGATCAGCG
JMFS137A06+ TGTGATCGGAATAGATCTTGGTACAACTTATTCATGTGTTGGAGTTTACAAAGATCAGCG
JMFN039O03+ TGTGATCGGAATAGATCTTGGTACAACTTATTCATGTGTTGGAGTTTACAAAGATCAGCG
JMSF049O02+ TGTGATCGGAATAGATCTTGGTACAACTTATTCATGTGTTGGAGTTTACAAAGATCAGCG
____________________________________________________________
consensus TGTGATCGGAATAGATCTTGGTACAACTTATTCATGTGTTGGAGTTTACAAAGATCAGCG

. : . : . : . : . : . :
JMSF001G17+ TGTAGAGATCATAGCTAATGACCAAGGTAATCGTATCACACCATCATGGGTTGGCTTCAC
JMSF045G24+ TGTAGAGATCATAGCTAATGACCAAGGTAATCGTATCACACCATCATGGGTTGGCTTCAC
JMFF044D03+ TGTAGAGATCATAGCTAATGACCAAGGTAATCGTATCACACCATCATGGGTTGGCTTCAC
JMFF031B05+ TGTAGAGATCATAGCTAATGACCAAGGTAATCGTATCACACCATCATGGGTTGGCTTCAC
JMFF010K18+ TGTAGAGATCATAGCTAATGACCAAGGTAATCGTATCACACCATCATGGGTTGGCTTCAC
JMFS055G09+ TGTAGAGATCATAGCTAATGACCAAGGTAATCGTATCACACCATCATGGGTTGGCTTCAC
JMFS137A06+ TGTAGAGATCATAGCTAATGACCAAGGTAATCGTATCACACCATCATGGGTTGGCTTCAC
JMFN039O03+ TGTAGAGATCATAGCTAATGACCAAGGTAATCGTATCACACCATCATGGGTTGGCTTCAC
JMSF049O02+ TGTAGAGATCATAGCTAATGACCAAGGTAATCGTATCACACCATCATGGGTTGGCTTCAC
____________________________________________________________
consensus TGTAGAGATCATAGCTAATGACCAAGGTAATCGTATCACACCATCATGGGTTGGCTTCAC

. : . : . : . : . : . :
JMSF001G17+ TGACAAT
JMSF045G24+ TGACAATGAGAGATTAATTGGTGAGGCTGCCAAGAACCAAGCCGCTTCCAACCCTGAGAG
JMFF044D03+ TGACAATGAGAGATTAATTGGTGAGGCTGCCAAGAACCAAGCCGCTTCCAACCCTGAGAG
JMFF031B05+ TGACAATGAGAGATTAATTGGTGAGGCTGCCAAGAACCAAGCCGCTTCCAACCCTGAGAG
JMFF010K18+ TGACAATGAGAGATTAATTGGTGAGGCTGCCAAGAACCAAGCCGCTTCCAACCCTGAGAG
JMFS055G09+ TGACAATGAGAGATTAATTGGTGAGGCTGCCAAGAACCAAGCCGCTTCCAACCCTGAGAG
JMFS137A06+ TGACAATGAGAGATTAATTGGTGAGGCTGCCAAGAACCAAGCCGCTTCCAACCCTGAGAG
JMFN039O03+ TGACAATGAGAGATTAATTGGTGAGGCTGCCAAGAACCAAGCCGCTTCCAACCCTGAGAG
JMSF049O02+ TGACAATGAGAGATTAATTGGTGAGGCTGCCAAGAACCAAGCCGCTTCCAACCCTGAGAG
____________________________________________________________
consensus TGACAATGAGAGATTAATTGGTGAGGCTGCCAAGAACCAAGCCGCTTCCAACCCTGAGAG

. : . : . : . : . : . :
JMSF045G24+ GACCATTTTTGATGTAAAAAGGCTCATTGGAAGAAAGTTTGACGACAAAGAAGTACAAAG
JMFF044D03+ GACCATTTTTGATGTAAAAAGGCTCATTGGAAGAAAGTTTGACGACNAAGAAGTACAAAG
JMFF031B05+ GACCATTTTTGATGTAAAAAGGCTCATTGGAAGAAAGTTTGACGACAAAGAAGTACAAAG
JMFF010K18+ GACCATTTTTGATGTAAAAAGGCTCATTGGAAGAAAGTTTGACGACAAAGAAGTACAAAG
JMFS055G09+ GACCATTTTTGATGTAAAAAGGCTCATTGGAAGAAAGTTTGACGACAAAGAAGTACAAAG
JMFS137A06+ GACCATTTTTGATGTAAAAAGGCTCATTGGAAGAAAGTTTGACGACAAAGAAGTACAAAG
JMFN039O03+ GACCATTTTTGATGACAAAAGGCTCATTGGAAGAAAGTTTGACGACAAAGAAGTACAAAG
JMSF049O02+ GACCATTTTTGATGTAAAAAGGCTCATTGGAAGAAAGTTTGACGACAAAGAAGTACAAAG
____________________________________________________________
consensus GACCATTTTTGATGTAAAAAGGCTCATTGGAAGAAAGTTTGACGACAAAGAAGTACAAAG

. : . : . : . : . : . :
JMSF045G24+ GGACATGAAACTTGTTCCTTACAAAATTGTTAACAAGGATGGAAAACCATATATACAAGT
JMFF044D03+ GGACATGAAACTTGTTCCTTACAAAATTGTTAACAAGGATGGAAAACCATATATACNAGT
JMFF031B05+ GGACATGAAACTTGTTCCTTACAAAATTGTTAACAAGGATGGAAAACCATATATACAAGT
JMFF010K18+ GGACATGAAACTTGTTCCTTACAAAATTGTTAACAAGGATGGAAAACCATATATACAAGT
JMFS055G09+ GGACATGAAACTTGTTCCTTACAAAATTGTTAACAAGGATGGAAAACCATATATACAAGT
JMFS137A06+ GGACATGAAACTTGTTCCTTACAAAATTGTTAACAAGGATGGAAAACCATATATACAAGT
JMFN039O03+ GGACATGAAACTTGTTCCTTACAAAATTGTTAACAAGGATGGAAAACCATATATACAAGT
JMSF049O02+ GGACATGAAACTTGTTCCTTACAAAATTGTTAACAAGGATGGAAAACCATATATACAAGT
____________________________________________________________
consensus GGACATGAAACTTGTTCCTTACAAAATTGTTAACAAGGATGGAAAACCATATATACAAGT

. : . : . : . : . : . :
JMSF045G24+ CAAGATCAAAGATGGTGAAACCAAGGTTTTCAGCCCTGAGGAGATTAGTGCCATGATTCT
JMFF044D03+ CAAGAATCAAGATGGTGAAACCA
JMFF031B05+ CAAGATCAAAGA
JMFF010K18+ CAAGATCAAAG
JMFS055G09+ CAAGATCAAAGATGGTGAAACCAAGGTTTTCAGCCCTGAGGAGATTAGTGCCATGATTCT
JMFS137A06+ CAAGATCAAAGATGGTGAAACCAAGGTTTTCAGCCCTGAGGAGATTAGTGCCATGATTCT
JMFN039O03+ CAAGATCAAAGATGGTGAAACCAAGGTTTTCAGCCCTGAGGAGATTAGTGCCATGATTCT
JMSF049O02+ CAAGATCAAAGATGGTGAAACCAAGGTTTTCAGCCCTGAGGAGATTAGTGCCATGATTCT
____________________________________________________________
consensus CAAGATCAAAGATGGTGAAACCAAGGTTTTCAGCCCTGAGGAGATTAGTGCCATGATTCT

. : . : . : . : . : . :
JMSF045G24+ TACTAAGATGAAGGAAACAGCTGAAGCTTTCCTTGGAAAGACAATCAAGGATGCAGTTGT
JMFS055G09+ TACTAAGATGAAGGAAACAGCTGAAGCTTTCCTTGGAAAGA
JMFS137A06+ TACTAAGATGA
JMFN039O03+ TACTAAGATGAAGGAAACAGCTGAA
JMSF049O02+ TACTAAGATGAAGGAAACAGCTGAAGCTTTCCTTGGAAAGACAATCAAGGATGCAGTTGT
____________________________________________________________
consensus TACTAAGATGAAGGAAACAGCTGAAGCTTTCCTTGGAAAGACAATCAAGGATGCAGTTGT

. : . : . : . : . : . :
JMSF045G24+ CACTGTTCCAGCTTACTTCAATGATGCTCAGAGGCAGGCTACTAAGGATGCAGGCATCAT
JMSF049O02+ CACTGTTCCAGCTTACTTCAATGATGCTCAGAGGCAGGCTACTAAGGATGCAGGCATCAT
____________________________________________________________
consensus CACTGTTCCAGCTTACTTCAATGATGCTCAGAGGCAGGCTACTAAGGATGCAGGCATCAT

. : . : . : . : . : . :
JMSF045G24+ TGCTGGATTGAATGTGGCCAGGATTATCAATGAACCAACTGCAGCTGCCATTGCCTATGG
JMSF049O02+ TGCTGGATTGAATGTGG
____________________________________________________________
consensus TGCTGGATTGAATGTGGCCAGGATTATCAATGAACCAACTGCAGCTGCCATTGCCTATGG

. : . : . : . : . : . :
JMSF045G24+ A
____________________________________________________________
consensus A