Alignment Contig 5404

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF021A17+ TAATTAAGCCCACTGGTAAAAGGCAGCGAGCAGCCAGCCTTCTCCCCTCAGATCTATGAC
rJMFF005J16+ AGCCCACTGGTAAAAGGCAGCGAGCAGNCAGCCTTCTCCCCTCAGATCTATGAC
rJMFF024A20+ AGCCCACTGGTAAAAGGCAGCGAGCAGCCAGCCTTCTCCCCTCAGATCTATGAC
rJMFF002H13+ ACTGGTAAAAGGCAGCGAGCAGCCAGCCTTCTCCCCTCAGATCTATGAC
rJMFF011F20+ CACTGGTAAAAGGCAGCGAGCAGCCAGCCTTCTCCCCTCAGATCTATGAC
rJMFF038A22+ AGCCCACTGGTAAAAGGCAGCGAGCAGCCAGCCTTCTCCCCTCAGATCTATGAC
rJMSF034M17+ AGGCAGCGAGCAGCCAGCCTTCTCCCCTCAGATCTATGAC
rJMFF022F12+ CACTGGTAAAAGGCAGCGAGCAGCCAGCCTTCTCCCCTCAGATCTATGAC
rJMSF043J23+ GGCAGCGAGCAGCCAGCCTTCTCCCCTCAGATCTATGAC
____________________________________________________________
consensus TAATTAAGCCCACTGGTAAAAGGCAGCGAGCAGCCAGCCTTCTCCCCTCAGATCTATGAC

. : . : . : . : . : . :
rJMFF021A17+ CTTAAATCTTGGAGGCTTCTTTACACAACAAATAAAACATACCTACCACACTCACATGCC
rJMFF005J16+ CTTAAATCTTGGAGGCTTCTTTACNCAACAAATAAAACATACCTACCACACTCACATGCC
rJMFF024A20+ CTTAAATCTTGGAGGCTTCTTTACACAACAAATAAAACATACCTACCACACTCACATGCC
rJMFF002H13+ CTTAAATCTTGGAGGCTTCTTTACACAACAAATAAAACATACCTACCACACTCACATGCC
rJMFF011F20+ CTTAAATCTTGGAGGCTTCTTTACACAACAAATAAAACATACCTACCACACTCACATGCC
rJMFF038A22+ CTTAAATCTTGGAGGCTTCTTTACACAACAAATAAAACATACCTACCACACTCACATGCC
rJMSF034M17+ CTTAAATCTTGGAGGCTTCTTTACACAACAAATAAAACATACCTACCACACTCACATGCC
rJMFF022F12+ CTTAAATCTTGGAGGCTTCTTTACACAACAAATAAAACATACCTACCACACTCACATGCC
rJMSF043J23+ CTTAAATCTTGGAGGCTTCTTTACACAACAAATAAAACATACCTACCACACTCACATGCC
____________________________________________________________
consensus CTTAAATCTTGGAGGCTTCTTTACACAACAAATAAAACATACCTACCACACTCACATGCC

. : . : . : . : . : . :
rJMFF021A17+ TACGTAAACAGAAAATAAAACATGGATTCCCAGAAACAAAAAATGTTTCTTTCCTCCTCG
rJMFF005J16+ TACGTAAACAGAAAATAAAACATGGATTCCCAGANACNANAAATGTTTCTTTCCTCCTCG
rJMFF024A20+ TACGTAAACAGAAAATAAAACATGGATTCCCAGAAACAAAAAATGTTTCTTTCCTCCTCG
rJMFF002H13+ TACGTAAACAGAAAATAAAACATGGATTCCCAGAAACAAAAAATGTTTCTTTCCTCCTCG
rJMFF011F20+ TACGTAAACAGAAAATAAAACATGGATTCCCAGAAACAAAAAATGTTTCTTTCCTCCTCG
rJMFF038A22+ TACGTAAACAGAAAATAAAACATGGATTCCCAGAAACAAAAAATGTTTCTTTCCTCCTCG
rJMSF034M17+ TACGTAAACAGAAAATAAAACATGGATTCCCAGAAACAAAAAATGTTTCTTTCCTCCTCG
rJMFF022F12+ TACGTAAACAGAAAATAAAACATGGATTCCCAGAAACAAAAAATGTTTCTTTCCTCCTCG
rJMSF043J23+ TACGTAAACAGAAAATAAAACATGGATTCCCAGAAACAAAAAATGTTTCTTTCCTCCTCG
____________________________________________________________
consensus TACGTAAACAGAAAATAAAACATGGATTCCCAGAAACAAAAAATGTTTCTTTCCTCCTCG

. : . : . : . : . : . :
rJMFF021A17+ TACTCTCCACACCACAAACGCTTGCCCACCGACCCTCCTTCACACACTATTTATTTTTAC
rJMFF005J16+ TACTCTCCACACCACAAACGCTTGCCCACCGACCCTCCTTCACACACTATTTATTTTTAC
rJMFF024A20+ TACTCTCCACACCACAAACGCTTGCCCACCGACCCTCCTTCACACACTATTTATTTTTAC
rJMFF002H13+ TACTCTCCACACCACAAACGCTTGCCCACCGACCCTCCTTCACACACTATTTATTTTTAC
rJMFF011F20+ TACTCTCCACACCACAAACGCTTGCCCACCGACCCTCCTTCACACACTATTTATTTTTAC
rJMFF038A22+ TACTCTCCACACCACAAACGCTTGCCCACCGACCCTCCTTCACACACTATTTATTTTTAC
rJMSF034M17+ TACTCTCCACACCACAAACGCTTGCCCACCGACCCTCCTTCACACACTATTTATTTTTAC
rJMFF022F12+ TACTCTCCACACCACAAACGCTTGCCCACCGACCCTCCTTCACACACTATTTATTTTTAC
rJMSF043J23+ TACTCTCCACACCACAAACGCTTGCCCACCGACCCTCCTTCACACACTATTTATTTTTAC
____________________________________________________________
consensus TACTCTCCACACCACAAACGCTTGCCCACCGACCCTCCTTCACACACTATTTATTTTTAC

. : . : . : . : . : . :
rJMFF021A17+ CATTTACAGATGATAGAGGCTAGGGTGAATGGAGACTAGAAACCAGAGTCATGACTTCTG
rJMFF005J16+ CATTTACAGATGATAGAGGCTAGGGTGAATGGAGACTAAAANCCANAGTCATGACTTCTG
rJMFF024A20+ CATTTACAGATGATAGAGGCTAGGGTGAATGGAGACTAGAAACCAGAGTCATGACTTCTG
rJMFF002H13+ CATTTACAGATGATAGAGGCTAGGGTGAATGGAGACTAGAAACCAGAGTCATGACTTCTG
rJMFF011F20+ CATTTACAGATGATAGAGGCTAGGGTGAATGGAGACTAGAAACCAGAGTCATGACTTCTG
rJMFF038A22+ CATTTACAGATGATAGAGGCTAGGGTGAATGGAGACTAGAAACCAGAGTCATGACTTCTG
rJMSF034M17+ CATTTACAGATGATAGAGGCTAGGGTGAATGGAGACTAGAAACCAGAGTCATGACTTCTG
rJMFF022F12+ CATTTACAGATGATAGAGGCTAGGGTGAATGGAGACTAGAAACCAGAGTCATGACTTCTG
rJMSF043J23+ CATTTACAGATGATAGAGGCTAGGGTGAATGGAGACTAGAAACCAGAGTCATGACTTCTG
____________________________________________________________
consensus CATTTACAGATGATAGAGGCTAGGGTGAATGGAGACTAGAAACCAGAGTCATGACTTCTG

. : . : . : . : . : . :
rJMFF021A17+ TTACGTTAAATAGAGCAGCTCTAAACTCGAAGCGCGCTTGATTAGGAGGAGGCCTGCTGG
rJMFF005J16+ TTACNTTAAATAGAGCAGCTCTAAACTCGAANCGCGCTTGATTAGGANGAGGCTTGCTGG
rJMFF024A20+ TTACGTTAAATAGAGCAGCTCTAAACTCGAAGCGCGCTTGATTAGGAGGAGGCCTGCTGG
rJMFF002H13+ TTACGTTAAATAGAGCAGCTCTAAACTCGAAGCGCGCTTGATTAGGAGGAGGCCTGCTGG
rJMFF011F20+ TTACGTTAAATAGAGCAGCTCTAAACTCGAAGCGCGCTTGATTAGGAGGAGGCCTGCTGG
rJMFF038A22+ TTACGTTAAATAGAGCAGCTCTAAACTCGAAGCGCGCTTGATTAGGAGGAGGCCTGCTGG
rJMSF034M17+ TTACGTTAAATAGAGCAGCTCTAAACTCGAAGCGCGCTTGATTAGGAGGAGGCCTGCTGG
rJMFF022F12+ TTACGTTAAATAGAGCAGCTCTAAACTCGAAGCGCGCTTGATTAGGAGGAGGCCTGCTGG
rJMSF043J23+ TTACGTTAAATAGAGCAGCTCTAAACTCGAAGCGGGCTTGATTAGGAGGAGGCCTGCTGG
JMFS028B08- GCGCTTGATTAGGAGGAGGCCTGCTGG
____________________________________________________________
consensus TTACGTTAAATAGAGCAGCTCTAAACTCGAAGCGCGCTTGATTAGGAGGAGGCCTGCTGG

. : . : . : . : . : . :
rJMFF021A17+ GTCGTTGTCATGTCCTTGCTAGATCTATTGTATTTCATGTGGCTTTTCACGAGCTGCCCG
rJMFF005J16+ GTCGTTGTCNTGTCCTTGCTAGATCTATTGTATTTCATGTGGCTTTTCACGAGCTGCCCG
rJMFF024A20+ GTCGTTGTCATGTCCTTGCTAGATCTATTGTATTTCATGTGGCTTTTCACGAGCTGCCCG
rJMFF002H13+ GTCGTTGTCATGTCCTTGCTAGATCTATTGTATTTCATGTGGCTTTTCACGAGCTGCCCG
rJMFF011F20+ GTCGTTGTCATGTCCTTGCTAGATCTATTGTATTTCATGTGGCTTTTCACGAGCTGCCCG
rJMFF038A22+ GTCGTTGTCATGTCCTTGCTAGATCTATTGTATTTCATGTGGCTTTTCACGAGCTGCCCG
rJMSF034M17+ GTCGTTGTCATGTCCTTGCTAGATCTATTGTATTTCATGTGGCTTTTCACGAGCTGCCCG
rJMFF022F12+ GTCGTTGTCATGTCCTTGCTAGATCTATTGTATTTCATGTGGCTTTTCACGAGCTGCCCG
rJMSF043J23+ GTCGTTGTCATGTCCTTGCTAGATCTATTGTATTTCATGTGGCTTTTCACGAGCTGCCCG
JMFS028B08- GTCGTTGTCATGTCCTGNCTAGATCTATTGTATTTCATGTGGCTTTTCACGAGCTGCCCG
____________________________________________________________
consensus GTCGTTGTCATGTCCTTGCTAGATCTATTGTATTTCATGTGGCTTTTCACGAGCTGCCCG

. : . : . : . : . : . :
rJMFF021A17+ GCTGAAATAGCAGACATAAGGGATAGCTCACCCGCGAGAACAGCCCCTGCTACGATGGTG
rJMFF005J16+ GCTGAAATANCAGACATAAGGGATAGCTCACCCGCGAGAACANCCCCTGCTACGATGGTG
rJMFF024A20+ GCTGAAATAGCAGACATAAGGGATAGCTCACCCGCGAGAACAGCCCCTGCTACGATGGTG
rJMFF002H13+ GCTGAAATAGCAGACATAAGGGATAGCTCACCCGCGAGAACAGCCCCTGCTACGATGGTG
rJMFF011F20+ GCTGAAATAGCAGACATAAGGGATAGCTCACCCGCGAGAACAGCCCCTGCTACGATGGTG
rJMFF038A22+ GCTGAAATAGCAGACATAAGGGATAGCTCACCCGCGAGAACAGCCCCTGCTACGATGGTG
rJMSF034M17+ GCTGAAATAGCAGACATAAGGGATAGCTCACCCGCGAGAACAGCCCCTGCTACGATGGTG
rJMFF022F12+ GCTGAAATAGCAGACATAAGGGATAGCTCACCCGCGAGAACAGCCCCTGCTACGATGGTG
rJMSF043J23+ GCTGAAATAGCAGACATAAGGGATAGCTCACCCGCGAGAACAGCCCCTGCTACGATGGTG
JMFS028B08- GCTGAAATAGCAGACATAAGGGATAGCTCACCCGCGAGAACAGCCCCTGCTACGATGGTG
____________________________________________________________
consensus GCTGAAATAGCAGACATAAGGGATAGCTCACCCGCGAGAACAGCCCCTGCTACGATGGTG

. : . : . : . : . : . :
rJMFF021A17+ GCCAAGAGCCTAGCATTTGTCCCGGGGGAGTCTTTGTTAGCGCCCTTCACCCCGAGTAAG
rJMFF005J16+ GCCA
rJMFF024A20+ GCCAAGAGCCTAGCATTTGTCCCGGGGGAGTCTTTGTTAGCGCCCTTCACCCCGAGTAAG
rJMFF002H13+ GCCAAGAGCCTAGCATTTGTCCCGGGGGAGTCTTTGTTAGCGCCCTTCACCCCGAGTAAG
rJMFF011F20+ GCCAAGAGCCTAGCATTTGTCCCGGGGGAGTCTTTGTTAGCGCCCTTCACCCCGAGTAAG
rJMFF038A22+ GCCAAGAGCCTAGCATTTGTCCCGGGGGAGTCTTTGTTAGCGCCCTTCACCCCGAGTAAG
rJMSF034M17+ GCCAAGAGCCTAGCATTTGTCCCGGGGGAGTCTTTGTTAGCGCCCTTCACCCCGAGTAAG
rJMFF022F12+ GCCAAGAGCCTAGCATTTGTCCCGGGGGAGTCTTTGTTAGCGCCCTTCACCCCGAGTAAG
rJMSF043J23+ GCCAAGAGCCTAGCATTTGTCCCGGGGGAGTCTTTGTTAGCGCCCTTCACCCCGAGTAAG
JMFS028B08- GCCAAGAGCCTAGCATTTGTCCCGGGGGAGTCTTTGTTAGCGCCCTTCACCCCGAGTAAG
____________________________________________________________
consensus GCCAAGAGCCTAGCATTTGTCCCGGGGGAGTCTTTGTTAGCGCCCTTCACCCCGAGTAAG

. : . : . : . : . : . :
rJMFF021A17+ TTCAAGCAGGCAGACTGAGATGCAAGCTGAGTCCCACCTCCAACTGTGCCCACCTCAATT
rJMFF024A20+ TTCAAGCAGGCAGACTGAGATGCAAGCTGAGTCCCACCTCCAACTGTGCCCACCTCAATT
rJMFF002H13+ TTCAAGCAGGCAGACTGAGATGCAAGCTGAGTCCCACCTCCAACTGTGCCCACCTCAATT
rJMFF011F20+ TTCAAGCAGGCAGACTGAGATGCAAGCTGAGTCCCACCTCCAACTGTGCCCACCTCAATT
rJMFF038A22+ TTCAAGCAGGCAGACTGAGATGCAAGCTGAGTCCCACCTCCAACTGTGCCCACCTCAATT
rJMSF034M17+ TTCAAGCAGGCAGACTGAGATGCAAGCTGAGTCCCACCTCCAACTGTGCCCACCTCAATT
rJMFF022F12+ TTCAAGCAGGCAGACTGAGATGCAAGCTGAGTCCCACCTCCAACTGTGCCCACCTCAATT
rJMSF043J23+ TTCAAGCAGGCAGACTGAGATGCAAGCTGAGTCCCACCTCCAACTGTGCCCACCTCAATT
JMFS028B08- TTCAAGCAGGCAGACTGAGATGCAAGCTGAGTCCCACCTCCAACTGTGCCCACCTCAATT
____________________________________________________________
consensus TTCAAGCAGGCAGACTGAGATGCAAGCTGAGTCCCACCTCCAACTGTGCCCACCTCAATT

. : . : . : . : . : . :
rJMFF021A17+ GAAGGCATGGTTACTGAAACATGGAGGTCCTTGCCATCATTGACTGCCTCCATCATAGTG
rJMFF024A20+ GAAGGCATGGTTACTGAAACATGGAGGTCCTTGCCATCATTGACTGCCTCCATCATAGTG
rJMFF002H13+ GAAGGCATGGTTACTGAAACATGGAGGTCCTTGCCATCATTGACTGCCTCCATCATAGTG
rJMFF011F20+ GAAGGCATGGTTACTGAAACATGGAGGTCCTTGCCATCATTGACTGCCTCCATCATAGTG
rJMFF038A22+ GAAGGCATGGNTACTGAAACATGGAGGTCCTTGCCATCATTGACTGCCTCCATCATAGTG
rJMSF034M17+ GAAGGCATGGTTACTGAAACATGGAGGTCCTTGCCATCATTGACTGCCTCCATCATAGTG
rJMFF022F12+ GAAGGCATGGTTACTGAAACATGGAGGTCCTTGCCATCATTGACTGCCTCCATCATAGTG
rJMSF043J23+ GAAGGCATGGTTACTGAAACATGGAGGTCCTTGCCATCATTGACTGCCTCCATCATAGTG
JMFS028B08- GAAGGCATGGTTACTGAAACATGGAGGTCCTTGCCATCATTGACTGCCTCCATCATAGTG
____________________________________________________________
consensus GAAGGCATGGTTACTGAAACATGGAGGTCCTTGCCATCATTGACTGCCTCCATCATAGTG

. : . : . : . : . : . :
rJMFF021A17+ ATACAGTGAGAGCTCTCCACATTTTGAGCGGGGTCCTGGCCTGTGGCTATGTA
rJMFF024A20+ ATACAGTGAGAGCTCTCCACATTTTGAGCGGGGTCCTGGCCTGTGGCTATGTATACAGCC
rJMFF002H13+ ATACAGTGAGAGCTCTCCACATTTT
rJMFF011F20+ ATACAGTGAGAGCTCTCCACATTTT
rJMFF038A22+ ATACAGTGAGAGCTCTCCACATTTTGAGCGG
rJMSF034M17+ ATACAGTGAGAGCTCTCCACATTTTGAGCGGGGTCCTGGCCTGTGGCTATGTATACAG
rJMFF022F12+ ATACAGTGAGAGCTCTCCACATTTTGAGCGGGGTCCTGGCCTGTGGCTATGTATACAGCC
rJMSF043J23+ ATACAGTGAGAGCTCTCCACATTTTGAGCGGGGTCCTGGCCTGTGGCTATGTATACAGCC
JMFS028B08- ATACAGTGAGAGCTCTCCACATTTTGAGCGGGGTCCTGGCCTGTGGCTATGTATACAGCC
____________________________________________________________
consensus ATACAGTGAGAGCTCTCCACATTTTGAGCGGGGTCCTGGCCTGTGGCTATGTATACAGCC

. : . : . : . : . : . :
rJMFF024A20+ GAGACAATATTGCTGGCATGAGCATT
rJMFF022F12+ GAGACAATATTGCTGGCATGAGCATTAAAACCACCAAGAGCGCCAGCCATGGCAG
rJMSF043J23+ GAGACAATATTGCTGGCATGAGCATTAAAACCACC
JMFS028B08- GAGACAATATTGCTGGCATGAGCATTAAAACCACCAAGAGCGCCAGCCATGGCAGAGCCA
____________________________________________________________
consensus GAGACAATATTGCTGGCATGAGCATTAAAACCACCAAGAGCGCCAGCCATGGCAGAGCCA

. : . : . : . : . : . :
JMFS028B08- GTGAGGTTTTTGAGCATGTTTAGCTCAACTAGAGAAGCAACTTCAGTTTTCAAGACTTTC
JMFS081C09- CATGTTTAGCTCAACTAGAGAAGCAACTTCAGTTTTCAAGACTTTC
____________________________________________________________
consensus GTGAGGTTTTTGAGCATGTTTAGCTCAACTAGAGAAGCAACTTCAGTTTTCAAGACTTTC

. : . : . : . : . : . :
JMFS028B08- TTAACCACATCTTCCTTAATTATGGCTTCACAAACAACTGATTTCCCTCTCCCCTCAATC
JMFS081C09- TTAACCACATCTTCCTTAATTATGGCTTCACAAACAACTGATTTCCCTCTCCCCTCAATC
____________________________________________________________
consensus TTAACCACATCTTCCTTAATTATGGCTTCACAAACAACTGATTTCCCTCTCCCCTCAATC

. : . : . : . : . : . :
JMFS028B08- CAGTTCACCGCAGCTGGCTTCTTGTCCGAGCAAAAGTTCCCAGATATGCCTAAGACATCC
JMFS081C09- CAGTTCACCGCAGCTGGCTTCTTGTCCGAGCAAAAGTTCCCAGATATGCCTAAGACATCC
____________________________________________________________
consensus CAGTTCACCGCAGCTGGCTTCTTGTCCGAGCAAAAGTTCCCAGATATGCCTAAGACATCC

. : . : . : . : . : . :
JMFS028B08- A
JMFS081C09- ATGTCAGGGTATTAAGTCTGAAGGTAATCAAGAACATTTTGGACGCCCTTGGAGATCATG
____________________________________________________________
consensus ATGTCAGGGTATTAAGTCTGAAGGTAATCAAGAACATTTTGGACGCCCTTGGAGATCATG

. : . : . : . : . : . :
JMFS081C09- TTCATCCCCATGGCATCTCCAGTGCCACAGCAGAATCTCATGTATAGATTTTTCCCAGCA
____________________________________________________________
consensus TTCATCCCCATGGCATCTCCAGTGCCACAGCAGAATCTCATGTATAGATTTTTCCCAGCA

. : . : . : . : . : . :
JMFS081C09- ATTGCACACTGGATGCTTTGCAATCTGGCAAATCTGCTTGATTTGTTAAAAGCGACAGCG
____________________________________________________________
consensus ATTGCACACTGGATGCTTTGCAATCTGGCAAATCTGCTTGATTTGTTAAAAGCGACAGCG

. : . : . : . : . : . :
JMFS081C09- AGAGTCTCAAAATTCACGGGATCCTCAACGAAGAACTTTAACTCAGCGGCCCTCTTGGCG
____________________________________________________________
consensus AGAGTCTCAAAATTCACGGGATCCTCAACGAAGAACTTTAACTCAGCGGCCCTCTTGGCG

. : . : . : . : . : . :
JMFS081C09- GTTCCGAACCTAACCACCGGAGCTCTGGTCATACCGTCTCTGAGAACGATACTGTTAGCG
____________________________________________________________
consensus GTTCCGAACCTAACCACCGGAGCTCTGGTCATACCGTCTCTGAGAACGATACTGTTAGCG

. : . : . : . : . : . :
JMFS081C09- CCGCCGGAGGCAAAGATAGCCTTGCAACCTCTATTGGTGCTAGCCACCAAGCAGCCTTCG
____________________________________________________________
consensus CCGCCGGAGGCAAAGATAGCCTTGCAACCTCTATTGGTGCTAGCCACCAAGCAGCCTTCG

. : . : . : . : . : . :
JMFS081C09- GTGGTAGCCATTGGGACGGAGTACTCGCACCCGTTAAGCAACAATGGACCCGCAATTCCC
____________________________________________________________
consensus GTGGTAGCCATTGGGACGGAGTACTCGCACCCGTTAAGCAACAATGGACCCGCAATTCCC

. : . : . : . : . : . :
JMFS081C09- ACGGGTATTTGCACGTACCCAACAGGCAACTCACAGCACTG
____________________________________________________________
consensus ACGGGTATTTGCACGTACCCAACAGGCAACTCACAGCACTG