Alignment Contig 5394

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF017N23+ TGATAGACTTCTTGTAAACATTATACATTGATTCTCCTAGGGACGAGAAAATTTCGCATT
rJMFF017C06+ TAGACTTCTTGTAAACATTATACATTGATTCTCCTAGGGACGAGAAAATTTCGCATT
rJMFF021O05+ TAGACTTCTTGTAAACATTATACATTGATTCTCCTAGGGACGAGAAAATTTCGCATT
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consensus TGATAGACTTCTTGTAAACATTATACATTGATTCTCCTAGGGACGAGAAAATTTCGCATT

. : . : . : . : . : . :
rJMFF017N23+ CTATGGGCAATTAAAATGAGAATAATGCACCCATAGTATTTAATGGCAATCTTGATGGAG
rJMFF017C06+ CTATGGGCAATTAAAATGAGAATAATGCACCCATAGTATTTAATGGCAATCTTGATGGAG
rJMFF021O05+ CTATGGGCAATTAAAATGAGAATAATGCACCCATAGTATTTAATGGCAATCTTGATGGAG
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consensus CTATGGGCAATTAAAATGAGAATAATGCACCCATAGTATTTAATGGCAATCTTGATGGAG

. : . : . : . : . : . :
rJMFF017N23+ GGAATTTCGCATTACAACAAGCTTTTGTCCTAAGAAAACACTATCTTCACACTGAGTTCA
rJMFF017C06+ GGAATTTCGCATTACAACAAGCTTTTGTCCTAAGAAAACACTATCTTCACACTGAGTTCA
rJMFF021O05+ GGAATTTCGCATTACAACAAGCTTTTGTCCTAAGAAAACACTATCTTCACACTGAGTTCA
rJMSF020I01+ ATTTCGCATTACAACAAGCTTTTGTCCTAAGAAAACACTATCTTCACACTGAGTTCA
rJMFF028C15+ CTTTTGTCCTAAGAAAACACTATCTTCACACTGAGTTCA
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consensus GGAATTTCGCATTACAACAAGCTTTTGTCCTAAGAAAACACTATCTTCACACTGAGTTCA

. : . : . : . : . : . :
rJMFF017N23+ TGTCAACTAACTTAACCATAACTAACTGTACAGTCAACTGATCTCATATATATGTCAATC
rJMFF017C06+ TGTCAACTAACTTAACCATAACTAACTGTACAGTCAACTGATCTCATATATATGTCAATC
rJMFF021O05+ TGTCAACTAACTTAACCATAACTAACTGTACAGTCAACTGATCTCATATATATGTCAATC
rJMSF020I01+ TGTCAACTAACTTAACCATAACTAACTGTACAGTCAACTGATCTCATATATATGTCAATC
rJMFF028C15+ TGTCAACTAACTTAACCATAACTAACTGTACAGTCAACTGATCTCATATATATGTCAATC
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consensus TGTCAACTAACTTAACCATAACTAACTGTACAGTCAACTGATCTCATATATATGTCAATC

. : . : . : . : . : . :
rJMFF017N23+ TCCACTTCCCCAAGTATAAAAATCAGAAGCATCCTTCATTTATTTGGCATACAGAGGGGA
rJMFF017C06+ TCCACTTCCCCAAGTATAAAAATCAGAAGCATCCTTCATTTATTTGGCATACAGAGGGGA
rJMFF021O05+ TCCACTTCCCCAAGTATAAAAATCAGAAGCATCCTTCATTTATTTGGCATACAGAGGGGA
rJMSF020I01+ TCCACTTCCCCAAGTATAAAAATCAGAAGCATCCTTCATTTATTTGGCATACAGAGGGGA
rJMFF028C15+ TCCACTTCCCCAAGTATAAAAATCAGAAGCATCCTTCATTTATTTGGCATACAGAGGGGA
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consensus TCCACTTCCCCAAGTATAAAAATCAGAAGCATCCTTCATTTATTTGGCATACAGAGGGGA

. : . : . : . : . : . :
rJMFF017N23+ AGTTGATGGTCTTGGATAAGCAGCCGTCGCGTTTCTACTAATAGCATCACCGTCACTTCG
rJMFF017C06+ AGTTGATGGTCTTGGATAAGCAGCCGTCGCGTTTCTACTAATAGCATCACCGTCACTTCG
rJMFF021O05+ AGTTGATGGTCTTGGATAAGCAGCCGTCGCGTTTCTACTAATAGCATCACCGTCACTTCG
rJMSF020I01+ AGTTGATGGTCTTGGATAAGCAGCCGTCGCGTTTCTACTAATAGCATCACCGTCACTTCG
rJMFF028C15+ AGTTGATGGTCTTGGATAAGCAGCCGTCGCGTTTCTACTAATAGCATCACCGTCACTTCG
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consensus AGTTGATGGTCTTGGATAAGCAGCCGTCGCGTTTCTACTAATAGCATCACCGTCACTTCG

. : . : . : . : . : . :
rJMFF017N23+ CCTACGACGTCTTGATCCAAGGGTTGTCGTATCCTCTGACTCCTTGAGCTGCGCTAGTTC
rJMFF017C06+ CCTACGACGTCTTGATCCAAGGGTTGTCGTATCCTCTGACTCCTTGAGCTGCGCTAGTTC
rJMFF021O05+ CCTACGACGTCTTGATCCAAGGGTTGTCGTATCCTCTGACTCCTTGAGCTGCGCTAGTTC
rJMSF020I01+ CCTACGACGTCTTGATCCAAGGGTTGTCGTATCCTCTGACTCCTTGAGCTGCGCTAGTTC
rJMFF028C15+ CCTACGACGTCTTGATCCAAGGGTTGTCGTATCCTCTGACTCCTTGAGCTGCGCTAGTTC
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consensus CCTACGACGTCTTGATCCAAGGGTTGTCGTATCCTCTGACTCCTTGAGCTGCGCTAGTTC

. : . : . : . : . : . :
rJMFF017N23+ TTCAACCGCCCCATCGCTTCGCCTATGATGTCTTGAACCATCGTGTTTATTGCTGAGAGT
rJMFF017C06+ TTCAACCGCCCCATCGCTTCGCCTATGATGTCTTGAACCATCGTGTTTATTGCTGAGAGT
rJMFF021O05+ TTCAACCGCCCCATCGCTTCGCCTATGATGTCTTGAACCATCGTGTTTATTGCTGAGAGT
rJMSF020I01+ TTCAACCGCCCCATCGCTTCGCCTATGATGTCTTGAACCATCGTGTTTATTGCTGAGAGT
rJMFF028C15+ TTCAACCGCCCCATCGCTTCGCCTATGATGTCTTGAACCATCGTGTTTATTGCTGAGAGT
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consensus TTCAACCGCCCCATCGCTTCGCCTATGATGTCTTGAACCATCGTGTTTATTGCTGAGAGT

. : . : . : . : . : . :
rJMFF017N23+ TGTCATATCCTTGGACTCCTTTAGTTGCTCTAGTTCCTTAACTACATCATCCATGGTTGG
rJMFF017C06+ TGTCATATCCTTGGACTCCTTTAGTTGCTCTAGTTCCTTAACTACATCATCCATGGTTGG
rJMFF021O05+ TGTCATATCCTTGGACTCCTTTAGTTGCTCTAGTTCCTTAACTACATCATCCATGGTTGG
rJMSF020I01+ TGTCATATCCTTGGACTCCTTTAGTTGCTCTAGTTCCTTAACTACATCATCCATGGTTGG
rJMFF028C15+ TGTCATATCCTTGGACTCCTTTAGTTGCTCTAGTTCCTTAACTACATCATCCATGGTTGG
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consensus TGTCATATCCTTGGACTCCTTTAGTTGCTCTAGTTCCTTAACTACATCATCCATGGTTGG

. : . : . : . : . : . :
rJMFF017N23+ CCTAAACCTAGGATCCTTGGACAGGCAGTGCAAGGCAAGATTAGCGACTTTCTGGGATAC
rJMFF017C06+ CCTAAACCTAGGATCCTTGGACAGGCAGTGCAAGGCAAGATTAGCGACTTTCTGGGATAC
rJMFF021O05+ CCTAAACCTAGGATCCTTGGACAGGCAGTGCAAGGCAAGATTAGCGACTTTCTGGGATAC
rJMSF020I01+ CCTAAACCTAGGATCCTTGGACAGGCAGTGCAAGGCAAGATTAGCGACTTTCTGGGATAC
rJMSF008C15+ ATTAGCGACTTTCTGGGATAC
rJMFF028C15+ CCTAAACCTAGGATCCTTGGACAGGCAGTGCAAGGCAAGATTAGCGACTTTCTGGGATAC
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consensus CCTAAACCTAGGATCCTTGGACAGGCAGTGCAAGGCAAGATTAGCGACTTTCTGGGATAC

. : . : . : . : . : . :
rJMFF017N23+ CTCAAGAGTGTACTGGCCTTCAAGACGGCTGTCCAAAACGCGGAAGACTTTACGCTTGTT
rJMFF017C06+ CTCAAGAGTGTACTGGCCTTCAAGACGGCTGTCCAAAACGCGGAAGACTTTACGCTTGTT
rJMFF021O05+ CTCAAGAGTGTACTGGCCTTCAAGACGGCTGTCCAAAACGCGGAAGACTTTACGCTTGTT
rJMSF020I01+ CTCAAGAGTGTACTGGCCTTCAAGACGGCTGTCCAAAACGCGGAAGACTTTACGCTTGTT
rJMSF008C15+ CTCAAGAGTGTACTGGCCTTCAAGACGGCTGTCCAAAACGCGAAAGACTTTACGCTTGTT
JMSF008C15- AAGACGGCTGTCCAAAACGCGGAAGACTTTACGCTTGTT
rJMFF028C15+ CTCAAGAGTGTACTGGCCTTCAAGACGGCTGTCCAAAACGCGGAAGACTTTACGCTTGTT
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consensus CTCAAGAGTGTACTGGCCTTCAAGACGGCTGTCCAAAACGCGGAAGACTTTACGCTTGTT

. : . : . : . : . : . :
rJMFF017N23+ AGCCAAGTAAGGTTTGGCCCATTCTACCAGATTGTGTTCTCCACATGGTCTGTTATAGTC
rJMFF017C06+ AGCCAAGTAAGGTTTGGCCCATTCTACCAGATTGTGTTCTCCACATGGTCTGTTATAGTC
rJMFF021O05+ AGCCAAGTAAGGTTTGGCCCATTCTACCAGATTGTGTTCTCCACATGGTCTGTTATAGTC
rJMSF020I01+ AGCCAAGTAAGGTTTGGCCCATTCTACCAGATTGTGTTCTCCACATGGTCTGTTATAGTC
rJMSF008C15+ AGCCAAGTAAGGTTTGGNCCATTCTACCAGATTGTGTTCTCCNCATGGTCTGTTATAGTC
JMSF008C15- AGCCAAGTAAGGTTTGGCCCATTCTACCAGATTGTGTTCTCCACATGGTCTGTTATAGTC
rJMFF028C15+ AGCCAAGTAAGGTTTGGCCCATTCTACCAGATTGTGTTCTCCACATGGTCTGTTATAGTC
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consensus AGCCAAGTAAGGTTTGGCCCATTCTACCAGATTGTGTTCTCCACATGGTCTGTTATAGTC

. : . : . : . : . : . :
rJMFF017N23+ GATCACTCTACGCCCTGATAGCATCTCGAGAANAACTACTCCAAAACTGTAAACGTCGCT
rJMFF017C06+ GATCACTCTACGCCCTGATAGCATCTCGAGAAGAACTACTCCAAAACTGTAAACGTCGCT
rJMFF021O05+ GATCACTCTACGCCCTGATAGCATCTCGAGAAGAACTACTCC
rJMSF020I01+ GATCACTCTACGCCCTGATAGCATCTCGAGAAGAACTACTCCAAAACTGTAAACGTCGCT
rJMSF008C15+ GATCACTCTACGCCCTGATAGCATCTCGAGAAGANCTACTCCAAAACTGTAAACGTCGCT
JMSF008C15- GATCACTCTACGCCCTGATAGCATCTCGAGAAGAACTACTCCAAAACTGTAAACGTCGCT
rJMFF028C15+ GATCACTCTACGCCCTGATAGCATCTCGAGAAGAACTACTCCAAAACTGTAAACGTCGCT
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consensus GATCACTCTACGCCCTGATAGCATCTCGAGAAGAACTACTCCAAAACTGTAAACGTCGCT

. : . : . : . : . : . :
rJMFF017C06+ CTTA
rJMSF020I01+ CTTAGCAGACAAATGCCCAGTGGATAAGTACTCCGGAGCAGCATATCCATAAGTTCCCAT
rJMSF008C15+ CTTAGCAGACNAATGCCC
JMSF008C15- CTTAGCAGACAAATGCCCAGTGGATAAGTACTCCGGAGCAGCATATCCATAAGTTCCCAT
rJMFF028C15+ CTTAGCAGACAAATGCCC
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consensus CTTAGCAGACAAATGCCCAGTGGATAAGTACTCCGGAGCAGCATATCCATAAGTTCCCAT

. : . : . : . : . : . :
rJMSF020I01+ AACCCTTGTGGAGACGTGGCTTTTATCGCCTGTTGGTCCATNCTTGGCCAA
JMSF008C15- AACCCTTGTGGAGACGTGGCTTTTATCGCCTGTTGGTC
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consensus AACCCTTGTGGAGACGTGGCTTTTATCGCCTGTTGGTCCATNCTTGGCCAA