Alignment Contig 5378

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF014P09+ CGCGACTTTTTGTACCAAATTGAAAAATGTGTCCCGTCTAGCGAAAGTGTGAAACAACAC
rJMFF009K09+ GACTTTTTGTACCAAATTGAAAAATGTGTCCCGTCTAGCGAAAGTGTGAAACAACAC
rJMSF039K09+ AGCGAAAGTGTGAAACAACAC
rJMSF011L06+ GCGAAAGTGTGAAACAACAC
____________________________________________________________
consensus CGCGACTTTTTGTACCAAATTGAAAAATGTGTCCCGTCTAGCGAAAGTGTGAAACAACAC

. : . : . : . : . : . :
rJMFF014P09+ TG-TTTTCGAGACGTAGTGCACAGATCTAAAGCATAATGTTACAGGGCTCCATGTATGTA
rJMFF009K09+ TG-TTTTCGAGACGTAGTGCACAGATCTAAAGCATAATGTTACAGGGCTCCATGTATGTA
rJMSF039K09+ TGNTTTTCGAGACGTAGTGCACAGATCTAAAGCATAATGTTACAGGGCTCCATGTATGTA
rJMSF011L06+ TGNTTTTCGAGACGTAGTGCACAGATCTAAAGCATAATGTTACAGGGCTCCATGTATGTA
rJMFF040M03+ TAATGTTACAGGGCTCCATGTATGTA
rJMFF032P05+ GTTTTCGAGACGTAGTGCACAGATCTAAAGCATAATGTTACAGGGCTCCATGTATGTA
rJMFF026A06+ GTTTTCGAGACGTAGTGCACAGATCTAAAGCATAATGTTACAGGGCTCCATGTATGTA
rJMFF009F12+ GTTTTCGAGACGTAGTGCACAGATCTAAAGCATAATGTTACAGGGCTCCATGTATGTA
____________________________________________________________
consensus TGGTTTTCGAGACGTAGTGCACAGATCTAAAGCATAATGTTACAGGGCTCCATGTATGTA

. : . : . : . : . : . :
rJMFF014P09+ TAGTTTGTGGAGCAATAAACAACATGTTCATGGTACAGACACCCAAATGCAAACCAAACC
rJMFF009K09+ TAGTTTGTGGAGCAATAAACAACATGTTCATGGTACAGACACCCAAATGCAAACCAAACC
rJMSF039K09+ TAGTTTGTGGAGCAATAAACAACATGTTCATGGTACAGACACCCAAATGCAAACCAAACC
rJMSF011L06+ TAGTTTGTGGAGCAATAAACAACATGTTCATGGTACAGACACCCAAATGCAAACCAAACC
rJMFF040M03+ TAGTTTGTGGAGCAATAAACAACATGTTCATGGTACAGACACCCAAATGCAAACCAAACC
rJMFF032P05+ TAGTTTGTGGAGCAATAAACAACATGTTCATGGTACAGACACCCAAATGCAAACCAAACC
rJMFF026A06+ TAGTTTGTGGAGCAATAAACAACATGTTCATGGTACAGACACCCAAATGCAAACCAAACC
rJMSF008M11+ GTTCATGGTACAGACACCCAAATGCAAACCAAACC
rJMFF009F12+ TAGTTTGTGGAGCAATAAACAACATGTTCATGGTACAGACACCCAAATGCAAACCAAACC
____________________________________________________________
consensus TAGTTTGTGGAGCAATAAACAACATGTTCATGGTACAGACACCCAAATGCAAACCAAACC

. : . : . : . : . : . :
rJMFF014P09+ CTAATGCTCCAACAATTTCTTGTGGCAAAAATGCTTCTTCAAGTGGTGAAAGCTTTCCAT
rJMFF009K09+ CTAATGCTCCAACAATTTCTTGTGGCAAAAATGCTTCTTCAAGTGGTGAAAGCTTTCCAT
rJMSF039K09+ CTAATGCTCCAACAATTTCTTGTGGCAAAAATGCTTCTTCAAGTGGTGAAAGCTTTCCAT
rJMSF011L06+ CTAATGCTCCAACAATTTCTTGTGGCAAAAATGCTTCTTCAAGTGGTGAAAGCTTTCCAT
rJMFF040M03+ CTAATGCTCCAACAATTTCTTGTGGCAAAAATGCTTCTTCAAGTGGTGAAAGCTTTCCAT
rJMFF032P05+ CTAATGCTCCAACAATTTCTTGTGGCAAAAATGCTTCTTCAAGTGGTGAAAGCTTTCCAT
rJMFF026A06+ CTAATGCTCCAACAATTTCTTGTGGCAAAAATGCTTCTTCAAGTGGTGAAAGCTTTCCAT
rJMSF008M11+ CTAATGCTCCAACAATTTCTTGTGGCAAAAATGCTTCTTCAAGTGGTGAAAGCTTTCCAT
rJMFF009F12+ CTAATGCTCCAACAATTTCTTGTGGCAAAAATGCTTCTTCAAGTGGTGAAAGCTTTCCAT
____________________________________________________________
consensus CTAATGCTCCAACAATTTCTTGTGGCAAAAATGCTTCTTCAAGTGGTGAAAGCTTTCCAT

. : . : . : . : . : . :
rJMFF014P09+ TCATGCTCGTAATCTACACCATCGCACCGGTCATTCCTCGCCTCTCCCTCGGGTACTCCT
rJMFF009K09+ TCATGCTCGTAATCTACACCATCGCACCGGTCATTCCTCGCCTCTCCCTCGGGTACTCCT
rJMSF039K09+ TCATGCTCGTAATCTACACCATCGCACCGGTCATTCCTCGCCTCTCCCTCGGGTACTCCT
rJMSF011L06+ TCATGCTCGTAATCTACACCATCGCACCGGTCATTCCTCGCCTCTCCCTCGGGTACTCCT
rJMFF040M03+ TCATGCTCGTAATCTACACCATCGCACCGGTCATTCCTCGCCTCTCCCTCGGGTACTCCT
rJMFF032P05+ TCATGCTCGTAATCTACACCATCGCACCGGTCATTCCTCGCCTCTCCCTCGGGTACTCCT
rJMFF026A06+ TCATGCTCGTAATCTACACCATCGCACCGGTCATTCCTCGCCTCTCCCTCGGGTACTCCT
rJMSF008M11+ TCATGCTCGTAATCTACACCATCGCACCGGTCATTCCTCGCCTCTCCCTCGGGTACTCCT
rJMFF009F12+ TCATGCTCGTAATCTACACCATCGCACCGGTCATTCCTCGCCTCTCCCTCGGGTACTCCT
____________________________________________________________
consensus TCATGCTCGTAATCTACACCATCGCACCGGTCATTCCTCGCCTCTCCCTCGGGTACTCCT

. : . : . : . : . : . :
rJMFF014P09+ CATTGCGCGGATGTGGAGTTCGTGTCGTTCAAAGTCCAATACTTTTTCACCGCGACTAGT
rJMFF009K09+ CATTGCGCGGATGTGGAGTTCGTGTCGTTCAAAGTCCAATACTTTTTCACCGCGACTAGT
rJMSF039K09+ CATTGCGCGGATGTGGAGTTCGTGTCGTTCAAAGTCCAATACTTTTTCACCGCGACTAGT
rJMSF011L06+ CATTGCGCGGATGTGGAGTTCGTGTCGTTCAAAGTCCAATACTTTTTCACCGCGACTAGT
rJMFF040M03+ CATTGCGCGGATGTGGAGTTCGTGTCGTTCAAAGTCCAATACTTTTTCACCGCGACTAGT
rJMFF032P05+ CATTGCGCGGATGTGGAGTTCGTGTCGTTCAAAGTCCAATACTTTTTCACCGCGACTAGT
rJMFF026A06+ CATTGCGCGGATGTGGAGTTCGTGTCGTTCAAAGTCCAATACTTTTTCACCGCGACTAGT
rJMSF008M11+ CATTGCGCGGATGTGGAGTTCGTGTCGTTCAAAGTCCAATACTTTTTCACCGCGACTAGT
rJMFF009F12+ CATTGCGCGGATGTGGAGTTCGTGTCGTTCAAAGTCCAATACTTTTTCACCGCGACTAGT
____________________________________________________________
consensus CATTGCGCGGATGTGGAGTTCGTGTCGTTCAAAGTCCAATACTTTTTCACCGCGACTAGT

. : . : . : . : . : . :
rJMFF014P09+ ATTTTCTCGGGCACGAGGGGACCGTCTTCATGGTCCATCAGTTTGTAGTCCCATCTCATA
rJMFF009K09+ ATTTTCTCGGGCACGAGGGGACCGTCTTCATGGTCCATCAGTTTGTAGTCCCATCTCATA
rJMSF039K09+ ATTTTCTCGGGCACGAGGGGACCGTCTTCATGGTCCATCAGTTTGTAGTCCCATCTCATA
rJMSF011L06+ ATTTTCTCGGGCACGAGGGGACCGTCTTCATGGTCCATCAGTTTGTAGTCCCATCTCATA
rJMFF040M03+ ATTTTCTCGGGCACGAGGGGACCGTCTTCATGGTCCATCAGTTTGTAGTCCCATCTCATA
rJMFF032P05+ ATTTTCTCGGGCACGAGGGGACCGTCTTCATGGTCCATCAGTTTGTAGTCCCATCTCATA
rJMFF026A06+ ATTTTCTCGGGCACGAGGGGACCGTCTTCATGGTCCATCAGTTTGTAGTCCCATCTCATA
rJMSF008M11+ ATTTTCTCGGGCACGAGGGGACCGTCTTCATGGTCCATCAGTTTGTAGTCCCATCTCATA
rJMFF009F12+ ATTTTCTCGGGCACGAGGGGACCGTCTTCATGGTCCATCAGTTTGTAGTCCCATCTCATA
____________________________________________________________
consensus ATTTTCTCGGGCACGAGGGGACCGTCTTCATGGTCCATCAGTTTGTAGTCCCATCTCATA

. : . : . : . : . : . :
rJMFF014P09+ CCTCCTATGATCCTCCTCACCTTGATCAGCGTGTCGACTTCGTCTCTGAAAACGACCGCG
rJMFF009K09+ CCTCCTATGATCCTCCTCACCTTGATCAGCGTGTCGACTTCGTCTCTGAAAACGACCGCG
rJMSF039K09+ CCTCCTATGATCCTCCTCACCTTGATCAGCGTGTCGACTTCGTCTCTGAAAACGACCGCG
rJMSF011L06+ CCTCCTATGATCCTCCTCACCTTGATCAGCGTGTCGACTTCGTCTCTGAAAACGACCGCG
rJMFF040M03+ CCTCCTATGATCCTCCTCACCTTGATCAGCGTGTCGACTTCGTCTCTGAAAACGACCGCG
rJMFF032P05+ CCTCCTATGATCCTCCTCACCTTGATCAGCGTGTCGACTTCGTCTCTGAAAACGACCGCG
rJMFF026A06+ CCTCCTATGATCCTCCTCACCTTGATCAGCGTGTCGACTTCGTCTCTGAAAACGACCGCG
rJMSF008M11+ CCTCCTATGATCCTCCTCACCTTGATCAGCGTGTCGACTTCGTCTCTGAAAACGACCGCG
rJMFF009F12+ CCTCCTATGATCCTCCTCACCTTGATCAGCGTGTCGACTTCGTCTCTGAAAACGACCGCG
JMSF039K09- CTGAAAACGACCGCG
____________________________________________________________
consensus CCTCCTATGATCCTCCTCACCTTGATCAGCGTGTCGACTTCGTCTCTGAAAACGACCGCG

. : . : . : . : . : . :
rJMFF014P09+ CCTTCCGGGCGTAAAATCCTGTCCATTTCCAAAAGAATGTCCTCGAAATCACACTTGTCC
rJMFF009K09+ CCTTCCGGGCGTAAAATCCTGTCCATTTCCAAAAGAATGTCCTCGAAATCACACTTGTCC
rJMSF039K09+ CCTTCCGGGCGTAAAATCCTGTCCATTTCCAAAAGAATGTCCTCGAAATCACACTTGTCC
rJMSF011L06+ CCTTCCGGGCGTAAAATCCTGTCCATTTCCAAAAGAATGTCCTCGAAATCACACTTGTCC
rJMFF040M03+ CCTTCCGGGCGTAAAATCCTGTCCATTTCCAAAAGAATGTCCTCGAAATCACACTTGTCC
rJMFF032P05+ CCTTCCGGGCGTAAAATCCTGTCCATTTCCAAAAGAATGTCCTCGAAATCACACTTGTCC
rJMFF026A06+ CCTTCCGGGCGTAAAATCCTGTCCATTTCCAAAAGAATGTCCTCGAAATCACACTTGTCC
rJMSF008M11+ CCTTCCGGGCGTAAAATCCTGTCCATTTCCAAAAGAATGTCCTCGAAATCACACTTGTCC
rJMFF009F12+ CCTTCCGGGCGTAAAATCCTGTCCATTTCCAAAAGAATGTCCTCGAAATCACACTTGTCC
JMSF039K09- CCTTCCGGGCGTAAAATCCTGTCCATTTCCAAAAGAATGTCCTCGAAATCACACTTGTCC
____________________________________________________________
consensus CCTTCCGGGCGTAAAATCCTGTCCATTTCCAAAAGAATGTCCTCGAAATCACACTTGTCC

. : . : . : . : . : . :
rJMFF014P09+ TTGTACAAGCTAAAGACACCATTAGCGTGAATGAGATCATAAGTCCTCGGGTACGTGGAG
rJMFF009K09+ TTGTACAAGCTAAAGACACCATTAGCGTGAATGAGATCATAAGTCCTCGGGTACGTGGAG
rJMSF039K09+ TTGTACAAGCTAAAGACACCATTAGCGTGAATGAGATCATAAGTCCTCGGGTACGTGGAG
rJMSF011L06+ TTGTACAAGCTAAAGACACCATTAGCGTGAATGAGATCATAAGTCCTCGGGTACGTGGAG
rJMFF040M03+ TTGTACAAGCTAAAGACACCATTAGCGTGAATGAGATCATAAGTCCTCGGGTACGTGGAG
rJMFF032P05+ TTGTACAAGCTAAAGACACCATTAGCGTGAATGAGATCATAAGTCCTCGGGTACGTGGAG
rJMFF026A06+ TTGTACAAGCTAAAGACACCATTAGCGTGAATGAGATCATAAGTCCTCGGGTACGTGGAG
rJMSF008M11+ TTGTACAAGCTAAAGACACCATTAGCGTGAATGAGATCATAAGTCCTCGGGTACGTGGAG
rJMFF009F12+ TTGTACAAGCTAAAGACACCATTAGCGTGAATGAGATCATAAGTCCTCGGGTACGTGGAG
JMSF039K09- TTGTACAAGCTAAAGACACCATTAGCGTGAATGAGATCATAAGTCCTCGGGTACGTGGAG
____________________________________________________________
consensus TTGTACAAGCTAAAGACACCATTAGCGTGAATGAGATCATAAGTCCTCGGGTACGTGGAG

. : . : . : . : . : . :
rJMFF014P09+ AAGCCTTCACACCAGTCATGGTAGATACCGATCATTCCTCGTTCATATATAACACCCAAA
rJMFF009K09+ AAGCCTTCACACCAGTCATGGTAGATACCGATCATTCCTCGTTCATATATAACACCCAAA
rJMSF039K09+ AAGCCTTCACACCAGTCATGGTAGATACCGATCATTCCTCGTTCATATATAACACCCAAA
rJMSF011L06+ AAGCCTTCACACCAGTCATGGTAGATACCGATCATTCCTCGTCCATATATAACACCCAAA
rJMFF040M03+ AAGCCTTCACACCAGTCATGGTAGATACCGATCATTCCTCGTTCATATATAACACCCAAA
rJMFF032P05+ AAGCCTTCACACCAGTCATGGTAGATACCGATCATTCCTCGTTCATATATAACACCCAAA
rJMFF026A06+ AAGCCTTCACACCAGTCATGGTAGATACCGATCATTCCTCGTTCATATATAACACCCAAA
rJMSF008M11+ AAGCCTTCACACCAGTCATGGTAGATACCGATCATTCCTCGTTCATATATAACACCCAAA
rJMFF009F12+ AAGCCTTCACACCAGTCATGGTAGATACCGATCATTCCTCGTTCATATATAACACCCAAA
JMSF039K09- AAGCCTTCACACCAGTCATGGTAGATACCGATCATTCCTCGTTCATATATAACACCCAAA
____________________________________________________________
consensus AAGCCTTCACACCAGTCATGGTAGATACCGATCATTCCTCGTTCATATATAACACCCAAA

. : . : . : . : . : . :
rJMFF014P09+ GTACTTTTATCAGCAATTGTAGGAACGACATTCATAACCCACTGTTTAGGAGACGTAAGC
rJMFF009K09+ GTACTTTTATCAGCAATTGTAGGAACGACATTCATAACTCACTGTTTAGGAGACGTAAGC
rJMSF039K09+ GTACTTTTATCAGCAATTGTAGGAACGACATTCATAACCCACTGTTTAGGAGACGTAAGC
rJMSF011L06+ GTACTTTTATCAGCAATTGTGGGAACGACATTCATAACCCACTGTTTAGGAGACGTAAGC
rJMFF040M03+ GTACTTTTATCAGCAATTGTAGGAACGACATTCATAACCCACTGTTTAGGAGACGTAAGC
rJMFF032P05+ GTACTTTTATCAGCAATTGTAGGAACGACATTCATAACCCACTGTTTAGGAGACGTAAGC
rJMFF026A06+ GTACTTTTATCAGCAATTGTAGGAACGACATTCATAACCCACTGTTT
rJMSF008M11+ GTACTTTTATCAGCAATTGTAGGAACGACATTCATAACCCACTGTTTAGGAGACGTAAGC
rJMFF009F12+ GTACTTTTATCAGCAATTGTAGGAACGACATTCATAACCCACTGTTTAGGAGACGTAAGC
JMSF039K09- GTACTTTTATCAGCAATTGTAGGAACGACATTCATAACCCACTGTTTAGGAGACGTAAGC
____________________________________________________________
consensus GTACTTTTATCAGCAATTGTAGGAACGACATTCATAACCCACTGTTTAGGAGACGTAAGC

. : . : . : . : . : . :
rJMFF014P09+ TGCGCAGCAAAACCTCCCAATCCCGCATTCATATCCATAATG-TTGCGA
rJMFF009K09+ TGCGCAGCAAAACCTCCCAATCCCGCATTCATATCCATA
rJMSF039K09+ TGCGCAGCAAAACCTCCCAATCCCGCATTCATATCCATAATG-TTGCGATACCTT-CCCG
rJMSF011L06+ TGCGCAGCAAAACCTCCCAATCCCGCATTCATATCCATAATGGTTGCGATACCNTNCCCG
rJMFF040M03+ TGCGCAGCAAAACCTCCCAATCCCGCATTCATATCCATAATG-TTGCGATACCTT-CCCG
rJMFF032P05+ TGCGCAGCAAAACCTCCCAATCCCGCATTCATATCCATAATG-TTGCGATACCTT-CCCG
rJMSF008M11+ TGCGCAGCAAAACCTCCCAATCCCGCATTCATATCCATAATG-TTGCGATACCTT-CCCG
rJMFF009F12+ TGCGCAGCAAAACCTCCCAATCCCGCATTCATATCCATAATG-TTGCGATACCTT-CCCG
JMSF039K09- TGCGCAGCAAAACCTCCCAATCCCGCATTCATATCCATAATG-TTGCGATACCTT-CCCG
____________________________________________________________
consensus TGCGCAGCAAAACCTCCCAATCCCGCATTCATATCCATAATG-TTGCGATACCTT-CCCG

. : . : . : . : . : . :
rJMSF039K09+ TGTCGATAATCTTATTGATTCTTTTGTAAGCACTAACGTGCTTCTTCCACTTCTTGTTGT
rJMSF011L06+ TGTCGATAATCTTATTGATTCTTTTGTANGCACTAACGTGCTTCTTCCA
rJMFF040M03+ TGTCGATAATCTTATTGATTCTTTTGTAAGCACTAACGTGCTTCTTCCACTTCTTGTTGT
rJMFF032P05+ TGTCGATAATCTTATTGATTCTTTTGTAAGCACTAACGTGCTTCTTCCACTTCTTGTTGT
rJMSF008M11+ TGTCGATAATCTTATTGATTCTTTTGTAAGCACTAACGTGCTTCTTCCACTTCTGGTTGT
rJMFF009F12+ TGTCGATAATCTTATTGATTCTTTTGTAAGCACTAACGTGCTTCTTCCACTTCTTGTT
JMSF039K09- TGTCGATAATCTTATTGATTCTTTTGTAAGCACTAACGTGCTTCTTCCACTTCTTGTTGT
____________________________________________________________
consensus TGTCGATAATCTTATTGATTCTTTTGTAAGCACTAACGTGCTTCTTCCACTTCTTGTTGT

. : . : . : . : . : . :
rJMSF039K09+ CGTCGAGATATGCCTCAGCTGAGACTCCCGAAACCAACCCGTTAGCAATTCTTGGGGGAA
rJMFF040M03+ CGTCGA
rJMFF032P05+ CGTCGA
rJMSF008M11+ CGT
JMSF039K09- CGTCGAGATATGCCTCAGCTGAGACTCCCGAAACCAACCCGTTAGCAATTCTTGGGGGAA
____________________________________________________________
consensus CGTCGAGATATGCCTCAGCTGAGACTCCCGAAACCAACCCGTTAGCAATTCTTGGGGGAA

. : . : . : . : . : . :
rJMSF039K09+ TAGCGGTAAGTCTTTCCGGGAATTTCTTGAAAGACTCGTCAATGTTTGCTTTGGGA
JMSF039K09- TAGCGGTAAGTCTTTCCGGGAATTTCTTGAGAGACTCGTCAATGTTTGCTTTGGGAGATG
____________________________________________________________
consensus TAGCGGTAAGTCTTTCCGGGAATTTCTTGAAAGACTCGTCAATGTTTGCTTTGGGAGATG

. : . : . : . : . : . :
JMSF039K09- GAGTTATGCATACGTCCATTTTCTTATACCAGACGTCGTCTGGATCACCAGATTGACAAA
____________________________________________________________
consensus GAGTTATGCATACGTCCATTTTCTTATACCAGACGTCGTCTGGATCACCAGATTGACAAA

. : . : . : . : . : . :
JMSF039K09- AAGTAGCTTTGGACTTCTTTTGTGAAGCTCGACACGAATCAACATCCATCCTCTCCTGCC
____________________________________________________________
consensus AAGTAGCTTTGGACTTCTTTTGTGAAGCTCGACACGAATCAACATCCATCCTCTCCTGCC

. : . : . : . : . : . :
JMSF039K09- AAATCGCAATTTCGCCCTTCTCGGACTTCTTCTCCCAACACAGAAGTTTAGCGATCCC
____________________________________________________________
consensus AAATCGCAATTTCGCCCTTCTCGGACTTCTTCTCCCAACACAGAAGTTTAGCGATCCC