Alignment Contig 5337

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF005D11+ CCTTTTTCATTCATTACTTACATATTCAAGCTGTTAGCAATCATATATATAGAGATCAGC
rJMFF039F14+ TTACTTATATATTCAAGCTGTTAGCAATCATATATATAGAGATCAGC
rJMFF016A15+ TTACTTATATATTCAAGCTGTTAGCAATCATATATATAGAGATCAGC
rJMFF037D15+ TTACTTATATATTCAAGCTGTTAGCAATCATATATATAGAGATCAGC
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consensus CCTTTTTCATTCATTACTTATATATTCAAGCTGTTAGCAATCATATATATAGAGATCAGC

. : . : . : . : . : . :
rJMFF005D11+ TTCCGCTCTTGGTCAGTCGAACACAAATAAATCAACAAAAGAAGGGAAAAAAAAAAAGGN
rJMFF039F14+ TTCCGCTCTTGGTCAGTCGAACACAAATAAATCAACAAAAGAAGGGAAAAAAAAAAAGGN
rJMFF016A15+ TTCCGCTCTTGGTCAGTCGAACACAAATAAATCAACAAAAGAAGGGAAAAAAAAAAAGGN
rJMFF037D15+ TTCCGCTCTTGGTCAGTCGAACACAAATAAATCAACAAAAGAAGGGAAAAAAAAAAAGGN
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consensus TTCCGCTCTTGGTCAGTCGAACACAAATAAATCAACAAAAGAAGGGAAAAAAAAAAAGGN

. : . : . : . : . : . :
rJMFF005D11+ TTTGACGGNTCACCAAACGCCTAAAAACTCNCTACNTTTCTTACNCNCAATCTATTGCNT
rJMFF039F14+ TTTGACGGNTCACCAAACGCCTAAAAANTCACTACNTTTCTTACNCNCAATCTATTGCNT
rJMFF016A15+ TTTGACGGNTCACCAAACGCCTAAAAACTCNCTACNTTTCTTACNCNCAATCTATTGCNT
rJMFF037D15+ TTTGACGGNTCACCAAACGCCTAAAAACTCACTACNTTTCTTACACACAATCTATTGCNT
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consensus TTTGACGGNTCACCAAACGCCTAAAAACTCACTACNTTTCTTACACACAATCTATTGCNT

. : . : . : . : . : . :
rJMFF005D11+ GTAACTAACACAGCTGAAAACCGAGCATGGTTTACNCNCCAGGCAAAAAAATATATATAT
rJMFF039F14+ GTAACTAAAACAGCTGAAAACCNAGCATGGTTTACNCGCCAGGCAAAAAAATATATATAT
rJMFF016A15+ GTAACTAAAACAGCTGAAAACCGAGCATGGTTTACNCGCCAGGCAAAAAAATATATATAT
rJMFF037D15+ GTAACTAAAACAGNTGAAAACCGAGCATGGTTTACNCGCCAGGCAAAAAAATATATATNT
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consensus GTAACTAAAACAGCTGAAAACCGAGCATGGTTTACNCGCCAGGCAAAAAAATATATATAT

. : . : . : . : . : . :
rJMFF005D11+ ATCANCATCNCTAAGTTAATGAACTTATGCAANAACCGCTGGNCTACTCANCCTTTTTCC
rJMFF039F14+ ATCANCATCNCTAAGTTAATGAACTTATGCAATAACCGCTGGTCTACTCANCCTTTTTCC
rJMFF016A15+ ATCANCATCNCTAAGTTAATGAACTTATGCAATAACCGCTGGTCTACTCANCCTTTTTCC
rJMFF037D15+ ATCANCATCNCTAAGTTAATGAACTTATGCAATAACCGCTGGTCTACTCANCCTTTTTCC
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consensus ATCANCATCNCTAAGTTAATGAACTTATGCAATAACCGCTGGTCTACTCANCCTTTTTCC

. : . : . : . : . : . :
rJMFF005D11+ TTCCATTGCATCTTTCTTCCTACNACAAGTTGCNCATAGGAATGGACCTTCCCNCGGNTT
rJMFF039F14+ TTCCATTGCATCTTTCTTCCTACNACAAGTTGCNCATAGGAATGGACCTTCCCACGGNTT
rJMFF016A15+ TTCCATTGCATCTTTCTTCCTACNACAAGTTGCNCATAGGAATGGACCTTCCCACGGNTT
rJMFF037D15+ TTCCATTGCATCTTTCTTCCTACNACAAGTTGCNCATAGGAATGGACCTTCCCACGGNTT
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consensus TTCCATTGCATCTTTCTTCCTACNACAAGTTGCNCATAGGAATGGACCTTCCCACGGNTT

. : . : . : . : . : . :
rJMFF005D11+ TGATGCAGGCNAAAAAAA-GGGACCCNAATTAACAAACAANCCCTCGTTNGGCGGCTGAT
rJMFF039F14+ TTATGCAGGCNAAAAAAAAGGGACCCGAATTAACANACAANCCCTCNCTNGGCGGCTGAT
rJMFF016A15+ TTATGCAGGCNAAAAAAAAGGGACCCNAATTAACANACAAGCCCTCNCTTGGCGGNTGAT
rJMFF037D15+ TTATGCAGGCNAAAANAAAGGGACCCGAATTAACANACAANCCCTCGCTTGGCGGCTGAT
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consensus TTATGCAGGCNAAAAAAAAGGGACCCGAATTAACAAACAAGCCCTCGCTTGGCGGCTGAT

. : . : . : . : . : . :
rJMFF005D11+ CTGCTTGGCATACAGCACATCTGAAAATACCAAAGCTTGAGTCNANAGGAAAATCCTTCC
rJMFF039F14+ CTGCTTGGCATACAGCACNTCTGAAAATACCAAAGNTTGAGTCNANAGGAAAATCCTTCC
rJMFF016A15+ CTGCTTGGCATACAGCACNTCTGAAAATACCAAAGCTTGAGTCNANAGGAAAATCCTTCC
rJMFF037D15+ CTGCTTGGCATACAGCACNTCTGAAAATACCAAAGCTTGAGTCNANAGGAAAATCCTTCC
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consensus CTGCTTGGCATACAGCACATCTGAAAATACCAAAGCTTGAGTCNANAGGAAAATCCTTCC

. : . : . : . : . : . :
rJMFF005D11+ CCAGTCNCTCTGCAAGCATTGCGGATCCCTCTTCAAACAATTCTTCCACAACACCAACTG
rJMFF039F14+ CCAGTCNCTCTGCAAGCATTGCGGATCCCTCTTCAAACAATTCTTCCACAACACCAACTG
rJMFF016A15+ CCAGTCGCTCTGCAAGCATTGCGGATCCCTCTTCAAACAATTCTTCCACAACACCAACTG
rJMFF037D15+ CCAGTCGCTCTGCAAGCATTGCGGATCCCTCTTCAAACAATTCTTCCACAACACCAACTG
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consensus CCAGTCGCTCTGCAAGCATTGCGGATCCCTCTTCAAACAATTCTTCCACAACACCAACTG

. : . : . : . : . : . :
rJMFF005D11+ CANAAAGCTTATTGGACCTAAAGTTATGTGATTTCCTCCCAAATATGAGNGAACTAAACA
rJMFF039F14+ CAAANAGNTTATTGGACCTAAAGTTATGNGATTTCCTCCCAAATATGAGTGAACTAAACA
rJMFF016A15+ CAAANAGCTTATTGGACCTAAAGTTATGNGATTTCCTCCCAAANATGAGNGAACTAAACA
rJMFF037D15+ CANANAGCTTATTGGACCTAAAGTTATGTGATTTCCNCCCAAATATGAGNGAACTAAACA
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consensus CAAAAAGCTTATTGGACCTAAAGTTATGTGATTTCCTCCCAAATATGAGTGAACTAAACA

. : . : . : . : . : . :
rJMFF005D11+ AACTTTGTTTCTTTATAGGCGTTGGCGG
rJMFF039F14+ AACTTTGTTTCTTTATAGGCGTTGGCGGTAAGGCAGGTCGGTCATAAGGAATAATATCAA
rJMFF016A15+ AACTTTGTTTCTTTATAGGCGTTGGCGG
rJMFF037D15+ AACTTTGTTTCTTTATAGGCGTTGGCGG
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consensus AACTTTGTTTCTTTATAGGCGTTGGCGGTAAGGCAGGTCGGTCATAAGGAATAATATCAA

. : . : . : . : . : . :
rJMFF039F14+ CAACC
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consensus CAACC