Alignment Contig 5327

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF002I17+ CGCCTGATATCATTGAATTGAAAGCTTCCTTTCTCCACTGATAAATTCAATCTGATGCTA
rJMFF002B13+ TTGAATTGAAAGCTTCCTTTCTCCACTGATAAATTCAATCTGATGCTA
rJMFF013F11+ TTGAATTGAAAGCTTCCTTTCTCNACTGATAAATTCAATCTGATGCTA
rJMSF001F10+ GATAAATTCAATCTGATGCTA
rJMSF040O14+ CTGATAAATTCAATCGGATGCTN
rJMSF018F12+ ATCTGATGCTA
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consensus CGCCTGATATCATTGAATTGAAAGCTTCCTTTCTCCACTGATAAATTCAATCTGATGCTA

. : . : . : . : . : . :
rJMFF002I17+ CCCCCTGCTGCACTACACCTCTGATTAATACA-TTATTTTACAAAATTATAAAATACAGA
rJMFF002B13+ CCCCCTGCTGCACTACACCTCTGATTAATACA-TTATTTTACAAAATTATAAAATACAGA
rJMFF013F11+ CCCCCTGCTGCACTACACCTCTGATTAATACA-TTATTTTACAAAATTATAAAATACAGA
rJMSF001F10+ CCCCCTGCTGCACTACACCTCTGATTAATACA-TTATTTTACAAAATTATAAAATACAGA
rJMSF040O14+ CCCCCTGCTGCACTACACCTCTGATTAGTACAGTTATTTTACAANATTNTAAAATACAGA
rJMSF018F12+ CCCCCTGCTGCACTACACCTCTGATTAATACA-TTATTTTACAAAATTATAAAATACAGA
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consensus CCCCCTGCTGCACTACACCTCTGATTAATACA-TTATTTTACAAAATTATAAAATACAGA

. : . : . : . : . : . :
rJMFF002I17+ TCTACAGAAGGGCAACAATCTC--TTCAGAAATCTGAATAATATGAGTTGAATTATCTTC
rJMFF002B13+ TCTACAGAAGGGCAACAATCTC--TTCAGAAATCTGAATAATATGAGTTGAATTATCTTC
rJMFF013F11+ TCTACAGAAGGGCAACAATCTC--TTCAGAAATCTGAATAATATGAGTTGAATTATCTTC
rJMSF001F10+ TCTACAGAAGGGCAACAATCTC--TTCAGAAATCTGAATAATATGAGTTGAATTATCTTC
rJMSF040O14+ TCTACAGAAGGGCAACAGGTCTCGTTCAGAAATCNGAATAATATGAGTTGAATTATCTTC
rJMSF018F12+ TCTACAGAAGGGCAACAATCTC--TTCAGAAATCTGAATAATATGAGTTGAATTATCTTC
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consensus TCTACAGAAGGGCAACAATCTC--TTCAGAAATCTGAATAATATGAGTTGAATTATCTTC

. : . : . : . : . : . :
rJMFF002I17+ TTCTTCTTCTTCTTCAG-AAATTAGTGACTCTTCATTGCATTTGCTGCACCGAACTTCAT
rJMFF002B13+ TTCTTCTTCTTCTTCAG-AAATTAGTGACTCTTCATTGCATTTGCTGCACCGAACTTAAT
rJMFF013F11+ TTCTTCTTCTTCTTCAG-AAATTAGTGACTCTTCATTGCATTTGCTGCACCGAACTTCAT
rJMSF001F10+ TTCTTCTTCTTCTTCAG-AAATTAGTGACTCTTCATTGCATTTGCTGCACCGAACTTCAT
rJMSF040O14+ TTCTTCTTCTTCTTCAGGAAATTAGNGACTCTTCATTGCATTTGCTGCACCGAACTTCAN
rJMSF018F12+ TTCTTCTTCTTCTTCAG-AAATTAGTGACTCTTCATTGCATTTGCTGCACCGAACTTCAT
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consensus TTCTTCTTCTTCTTCAG-AAATTAGTGACTCTTCATTGCATTTGCTGCACCGAACTTCAT

. : . : . : . : . : . :
rJMFF002I17+ AGTGTTGTATTGAACAGGCATAGTTTACCGAGAACAATGGATTTTCAGATTCAGCACACA
rJMFF002B13+ AGTGTTGTATTGAACAGGCATAGTTTACCGAGAACAATGGATTTTCAGATTCAGCACACA
rJMFF013F11+ AGTGTTGTATTGAACAGGCATAGTTTACCGAGAACAATGGATTTTCAGATTCAGCACACA
rJMSF001F10+ AGTGTTGTATTGAACAGGCATAGTTTACCGAGAACAATGGATTTTCAGATTCAGCACACA
rJMSF040O14+ AGTGTTGTATTGAANAGGCATAGTTTACCGAGAACNATGGATTTTCNGATTCAGCACACA
rJMSF018F12+ AGTGTTGTATTGAACAGGCATAGTTTACCGAGAACAATGGATTTTCAGATTCAGCACACA
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consensus AGTGTTGTATTGAACAGGCATAGTTTACCGAGAACAATGGATTTTCAGATTCAGCACACA

. : . : . : . : . : . :
rJMFF002I17+ TCCAACCTCTTCTTCAATTTGCACCATAACCCGTTCTTCGTATGAATTGTTGCTCCAGTA
rJMFF002B13+ TCCAACCTCTTCTTCAATTTGCACCATAACCCGTTCTTCGTATGAATTGTTGCTCCAGTA
rJMFF013F11+ TCCAACCTCTTCTTCAATTTGCACCATAACCCGTTCTTCGTATGAATTGTTGCTCCAGTA
rJMSF001F10+ TCCAACCTCTTCTTCAATTTGCACCATAACCCGTTCTTCGTATGAATTGTTGCTCCAGTA
rJMSF040O14+ TCCAACCTCTTCTTCAATTTGCACCATAACCCGTTCTTCGTATGAATTGTTGCTCCAGTA
rJMSF018F12+ TCCAACCTCTTCTTCAATTTGCACCATAACCCGTTCTTCGTATGAATTGTTGCTCCAGTA
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consensus TCCAACCTCTTCTTCAATTTGCACCATAACCCGTTCTTCGTATGAATTGTTGCTCCAGTA

. : . : . : . : . : . :
rJMFF002I17+ ACAAGCTTCACGGACTCTGGCGTTCCTTTCAAATCGATGTCAAACTTCTGCAGCAACATT
rJMFF002B13+ ACAAGCTTCACGGACTCTGGCGTTCCTTTCAAATCGATGTCAAACTTCTGCAGCAACATT
rJMFF013F11+ ACAAGCTTCACGGACTCTGGCGTTCCTTTCAAATCGATGTCAAACTTCTGCAGCAACATT
rJMSF001F10+ ACAAGCTTCACGGACTCTGGCGTTCCTTTCAAATCGATGTCAAACTTCTGCAGCAACATT
rJMSF040O14+ ACAAGCTTCACGGACTCTGGCGTTCCTTTCAAATCGATGTCAAACTTCTGCAGCAACATT
rJMSF018F12+ ACAAGCTTCACGGACTCTGGCGTTCCTTTCAAATCGATGTCAAACTTCTGCAGCAACATT
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consensus ACAAGCTTCACGGACTCTGGCGTTCCTTTCAAATCGATGTCAAACTTCTGCAGCAACATT

. : . : . : . : . : . :
rJMFF002I17+ GCCAATGCTATAGCTGATTCCATGAGTGCAAACTGGTCCCCTACACATTTTCTTGGTCCT
rJMFF002B13+ GCCAATGCTATAGCTGATTCCATGAGTGCAAACTGGTCCCCTACACATTTTCTTGGTCCT
rJMFF013F11+ GCCAATGCTATAGCTGATTCCATGAGTGCAAACTGGTCCCCTACACATTTTCTTGGTCCT
rJMSF001F10+ GCCAATGCTATAGCTGATTCCATGAGTGCAAACTGGTCCCCTACACATTTTCTTGGTCCT
rJMSF040O14+ GCCAATGCTATAGCTGATTCCATGAGTGCAAACTGGTCCCCTACACNTTTTCTTGGTCCT
rJMSF018F12+ GCCAATGCTATAGCTGATTCCATGAGTGCAAACTGGTCCCCTACACATTTTCTTGGTCCT
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consensus GCCAATGCTATAGCTGATTCCATGAGTGCAAACTGGTCCCCTACACATTTTCTTGGTCCT

. : . : . : . : . : . :
rJMFF002I17+ CCACCGAAAGGCAAGAAAGCAAAGTCTGATATAATCTCATTTGGGTATAGTGCTCCAGGG
rJMFF002B13+ CCACCGAAAGGCAAGAAAGCAAAGTCTGATATAATCTCATTTGGGTATAGTGCTCCAGGG
rJMFF013F11+ CCACCGAAAGGCAAGAAAGCAAAGTCTGATATAATCTCATTTGGGTATAGTGCTCCAGGG
rJMSF001F10+ CCACCGAAAGGCAAGAAAGCAAAGTCTGATATAATCTCATTTGGGTATAGTGCTCCAGGG
rJMSF040O14+ CCACCGAAAGGCAAGAAAGCAAAGTCTGATATAATCTCATTTGGGTATAGTGCTCCAGGG
rJMSF018F12+ CCACCGAAAGGCAAGAAAGCAAAGTCTGATATAATCTCATTTGGGTATAGTGCTCCAGGG
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consensus CCACCGAAAGGCAAGAAAGCAAAGTCTGATATAATCTCATTTGGGTATAGTGCTCCAGGG

. : . : . : . : . : . :
rJMFF002I17+ CTTCTAGATGGATCAAAACCAGCCCACCCTTCGATTTCACTTTCCTTTCGAACTTGAAAC
rJMFF002B13+ CTTCTAGATGGATCAAAACCAGCCCACCCTTCGATTTCACTTTCCTTTCGAACTTGAAAC
rJMFF013F11+ CTTCTAGATGGATCAAAACCAGCCCACCCTTCGATTTCACTTTCCTTTCGAACTTGAAAC
rJMSF001F10+ CTTCTAGATGGATCAAAACCAGCCCACCCTTCGATTTCACTTTCCTTTCGAACTTGAAAC
rJMSF040O14+ CTTCTAGATGGATCAAAACCAGCCCACCCTTCGATTTCNCTTNCCTTTCNAACTTGAAAC
rJMSF018F12+ CTTCTAGATGGATCAAAACCAGCCCACCCTTCGATTTCACTTTCCTTTCGAACTTGAAAC
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consensus CTTCTAGATGGATCAAAACCAGCCCACCCTTCGATTTCACTTTCCTTTCGAACTTGAAAC

. : . : . : . : . : . :
rJMFF002I17+ CTCTCAGGTTCAAACTCATTTGGTTTGTCCCAGAAGTATGGTGACCTATGGAGATTATAG
rJMFF002B13+ CTCTCAGGTTCAAACTCATTTGGTTTGTCCCAGAAGTATGGTGACCTATGGAGATTATAG
rJMFF013F11+ CTCTCAGGTTCAAACTCATTTGGTTTGTCCCAGAAGTATGGTGACCTATGGAGATTATAG
rJMSF001F10+ CTCTCAGGTTCAAACTCATTTGGTTTGTCCCAGAAGTATGGTGACCTATGGAGATTATAG
rJMSF040O14+ CNCNCAGGTTCAAACTCATTTGGTTTGTCCCAGAAGTATGGNGACCTATGGAGATTATAG
rJMSF018F12+ CTCTCAGGTTCAAACTCATTTGGTTTGTCCCAGAAGTATGGTGACCTATGGAGATTATAG
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consensus CTCTCAGGTTCAAACTCATTTGGTTTGTCCCAGAAGTATGGTGACCTATGGAGATTATAG

. : . : . : . : . : . :
rJMFF002I17+ ACAGAAATAAATATGTCGGTACCAGCTGGAATTGCATATCCATCCTTGTCACCATTGTAA
rJMFF002B13+ ACAGAAATAAATATGTCGGTACCAGCTGGAATTGCATATCCATCCTTGTCACCATTGTAA
rJMFF013F11+ ACAGAAATAAATATGTCGGTACCAGCTGGAATTGCATATCCATCCTTGTCACCATTGTAA
rJMSF001F10+ ACAGAAATAAATATGTCGGTACCAGCTGGAATTGCATATCCATCCTTGTCACCATTGTAA
rJMSF040O14+ ACAGAANTANATATGTCGGTACCAGCTGGAATTGCNTATCCATCCTTGTCACCATTGTAA
rJMSF018F12+ ACAGAAATAAATATGTCGGTACCAGCTGGAATTGCATATCCATCCTTGTCACCATTGTAA
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consensus ACAGAAATAAATATGTCGGTACCAGCTGGAATTGCATATCCATCCTTGTCACCATTGTAA

. : . : . : . : . : . :
rJMFF002I17+ CCTCCTGGTAATTGATCTGG
rJMFF002B13+ CCTCCTGGTAATTGATCTGGCCTAA
rJMFF013F11+ CCTCCTGGTAATTGATCTGGCCTAA
rJMSF001F10+ CCTCCTGGTAATTGATCTGGCCTA
rJMSF040O14+ CCTCCTGGTAATTGATCTGGCCTAAGGGAACGCCTAATAAGCAATGGAGGT
rJMSF018F12+ CCTCCTGGTAATTGATCTGGCCTAAGGGAACGCCTAATAAGCAATGGAGGTTGTGGAAAT
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consensus CCTCCTGGTAATTGATCTGGCCTAAGGGAACGCCTAATAAGCAATGGAGGTTGTGGAAAT

. : . : . : . : . : . :
rJMSF018F12+ AAGCGCAGAGCCTCCACGAC
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consensus AAGCGCAGAGCCTCCACGAC