Alignment Contig 5278

                          .    :    .    :    .    :    .    :    .    :    .    :

JMSF045O23+ AGGGTTAACAATAAATAGTATTTAACAAAAGTTGGAAGCTCTGACAAGGCCCTTTTGTTC
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consensus AGGGTTAACAATAAATAGTATTTAACAAAAGTTGGAAGCTCTGACAAGGCCCTTTTGTTC

. : . : . : . : . : . :
JMSF045O23+ CCTAGTTGGGACTGACTGAGCGAGCGAGCGAGCTTGAAGATGAGAGAGCTAATGGGGCTG
JMFF010O24+ TTGGGACTGACTGAGCGAGCGAGCGAGCTTGAAGATGAGAGAGCTAATGGGGCTG
JMFS077E09+ GCGAGCGAGCGAGCTTGAAGATGAGAGAGCTAATGGGGCTG
JMFF024J17+ GAGCGAGCTTGAAGATGAGAGAGCTAATGGGGCTG
JMFF010L15+ GAGCGAGCGAGCTTGAAGATGAGAGAGCTAATGGGGCTG
JMSF043H19+ TTGGGACTGACTGAGCGAGCGAGCGAGCTTGAAGATGAGAGAGCTAATGGGGCTG
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consensus CCTAGTTGGGACTGACTGAGCGAGCGAGCGAGCTTGAAGATGAGAGAGCTAATGGGGCTG

. : . : . : . : . : . :
JMSF045O23+ CCGTGGGCGGTGGCGCTTCTCATTGGGTTTCTGCTCAACGCGCCGCCCTCCGCCGTCGCT
JMFF010O24+ CCGTGGGCGGTGGCGCTTCTCATTGGGTTTCTGCTCAACGCGCCGCCCTCCGCCGTCGCT
JMFS077E09+ CCGTGGGCGGTGGCGCTTCTCATTGGGTTTCTGCTCAACGCGCCGCCCTCCGCCGTCGCT
JMFF024J17+ CCGTGGGCGGTGGCGCTTCTCATTGGGTTTCTGCTCAACGCGCCGCCCTCCGCCGTCGCT
JMFF010L15+ CCGTGGGCGGTGGCGCTTCTCATTGGGTTTCTGCTCAACGCGCCGCCCTCCGCCGTCGCT
JMSF043H19+ CCGTGGGCGGTGGCGCTTCTCATTGGGTTTTTGCTCAACGCGCCGCCCTCCGCCGTCGCT
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consensus CCGTGGGCGGTGGCGCTTCTCATTGGGTTTCTGCTCAACGCGCCGCCCTCCGCCGTCGCT

. : . : . : . : . : . :
JMSF045O23+ GATACAGATCCGACTGATGCGTCAGTTCTGAGGGGGTTGTTCTCCAGCCTGAACTCACCA
JMFF010O24+ GATACAGATCCGACTGATGCGTCAGTTCTGAGGGGGTT--TCTCCAGCCTGAACTCACCA
JMFS077E09+ GATACAGATCCGACTGATGCGTCAGTTCTGAGGGGGTTGTTCTCCAGCCTGAACTCACCA
JMFF024J17+ GATACAGATCCGACTGATGCGTCAGTTCTGAGGGGGTTGTTCTCCAGCCTGAACTCACCA
JMFF010L15+ GATACAGATCCGACTGATGCGTCAGTTCTGAGGGGGTTGTTCTCCAGCCTGAACTCACCA
JMSF043H19+ GATACAGATCCGACTGATGCGTCAGTTCTGAGGGGGTTGTTCTCCAGCCTGAACTCACCA
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consensus GATACAGATCCGACTGATGCGTCAGTTCTGAGGGGGTTGTTCTCCAGCCTGAACTCACCA

. : . : . : . : . : . :
JMSF045O23+ CCGCAGCTTACAAAATGGACGGCAAATGGTGGAGACCCTTGTGGAGAGTCGTGGAAGGGC
JMFF010O24+ CCGCAGCTTACAAAATGGACGGCAAATGGTGGAGACCCTTGTGGAGAGTCGTGGAAGGGC
JMFS077E09+ CCGCAGCTTACAAAATGGACGGCAAATGGTGGAGACCCTTGTGGAGAGTCGTGGAAGGGC
JMFF024J17+ CCGCAGCTTACAAAATGGACGGCAAATGGTGGAGACCCTTGTGGAGAGTCGTGGAAGGGC
JMFF010L15+ CCGCAGCTTACAAAATGGACGGCAAATGGTGGAGACCCTTGTGGAGAGTCGTGGAAGGGC
JMSF043H19+ CCGCAGCTTACAAAATGGACGGCAAATGGTGGAGACCCTTGTGGAGAGTCGTGGAAGGGC
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consensus CCGCAGCTTACAAAATGGACGGCAAATGGTGGAGACCCTTGTGGAGAGTCGTGGAAGGGC

. : . : . : . : . : . :
JMSF045O23+ GTTAGTTGTTCAGGCAATAGAGTAACCGAAATTCAGATTTCGGGTCTACAACTCACTGGG
JMFF010O24+ GTTAGTTGTTCAGGCAATAGAGTAACCGAAATTCAGATTTCGGGTCTACAACTCACTGGG
JMFS077E09+ GTTAGTTGTTCAGGCAATAGAGTAACCGAAATTCAGATTTCGGGTCTACAACTCACTGGG
JMFF024J17+ GTTAGTTGTTCAGGCAATAGAGTAACCGAAATTCAGATTTCGGGTCTACAACTCACTGGG
JMFF010L15+ GTTAGTTGTTCAGGCAATAGAGTAACCGAAATTCAGATTTCGGGTCTACAACTCACTGGG
JMSF043H19+ GTTAGTTGTTCAGGCAATAGAGTAACCGAAATTCAGATTTCGGGTCTACAACTCACTGGG
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consensus GTTAGTTGTTCAGGCAATAGAGTAACCGAAATTCAGATTTCGGGTCTACAACTCACTGGG

. : . : . : . : . : . :
JMSF045O23+ TCAATGGGATTCCAATTGGATCAACTGAAATCTGTAACCACCTTTGATATAAGTACTAAC
JMFF010O24+ TCAATGGGATTCCAATTGGATCAACTGAAATCTGTAACCACCTTTGATATAAGTACTAAC
JMFS077E09+ TCAATGGGATTCCAATTGGATCAACTGAAATCTGTAACCACCTTTGATATAAGTACTAAC
JMFF024J17+ TCAATGGGATTCCAATTGGATCAACTGAAATCTGTAACCACCTTTGATATAAGTACTAAC
JMFF010L15+ TCAATGGGATTCCAATTGGATCAACTGAAATCTGTAACCACCTTTGATATAAGTACTAAC
JMSF043H19+ TCAATGGGATTCCAATTGGATCAACTGAAATCTGTAACCACCTTTGATATAAGTACTAAC
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consensus TCAATGGGATTCCAATTGGATCAACTGAAATCTGTAACCACCTTTGATATAAGTACTAAC

. : . : . : . : . : . :
JMSF045O23+ AATCTCGGGAACTCATTGCCATATCAGCTCCCTCCAAATGTACAGAAACTAAATCTCGCT
JMFF010O24+ AATCTCGGGAACTCATTGCCATATCAGCTCCCTCCAAATGTACAGAAACTAAATCTCGCT
JMFS077E09+ AATCTCGGGAACTCATTGCCATATCAGCTCCCTCCAAATGTACAGAAACTAAATCTCGCT
JMFF024J17+ AATCTCGGGAACTCATTGCCATATCAGCTCCCTCCAAATGTACAGAAACTAAATCTCGCT
JMFF010L15+ AATCTCGGGAACTCATTGCCATATCAGCTCCCTCCAAATGTACAGAAACTAAATCTCGCT
JMSF043H19+ AATCTCGGGAACTCATTGCCATATCAGCTCCCTCCAAATGTACAGAAACTAAATCTCGCT
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consensus AATCTCGGGAACTCATTGCCATATCAGCTCCCTCCAAATGTACAGAAACTAAATCTCGCT

. : . : . : . : . : . :
JMSF045O23+ GGTAATGGCTTTACCGGTGGCCTCCCATATTCCATTTCACAAATGGCCCCCCTCGAATAT
JMFF010O24+ GGTAATGGCTTTACCGGTGGCCTCCCATATTCCATTTCACAAATGGCCCCCCTCGAATAT
JMFS077E09+ GGTAATGGCTTTACCGGTGGCCTCCCATATTCCATTTCACAAATGGCCCCCCTCGAATAT
JMFF024J17+ GGTAATGGCTTTACCGGTGGCCTCCCATATTCCATTTCACAAATGGCCCCCCTCGAATAT
JMFF010L15+ GGTAATGGCTTTACCGGTGGCCTCCCATATTCCATTTCACAAATGGCCCCCCTCGAATAT
JMSF043H19+ GGTAATGGCTTTACCGGTGGCCTCCCATATTCCATTTCACAAATGGCCCCCCTCGAATAT
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consensus GGTAATGGCTTTACCGGTGGCCTCCCATATTCCATTTCACAAATGGCCCCCCTCGAATAT

. : . : . : . : . : . :
JMSF045O23+ TTAAATGTTAGTCACAATCAACTCCAGGGCGAAGTGACCGTCATGTTCGTATCGCTTACG
JMFF010O24+ T
JMFS077E09+ TTAAATGTTAGTCACAATCAACTCCAGGGCGAAGTGACCGTCATGTTCGTATCGCTTACG
JMFF024J17+ TTAAATGTTAGTCACAATCAACTCCAGGGCGAAGTGACCGTCATGTTCGTATCGCTTACG
JMFF010L15+ TTAAATGTTAGTCACAATCAACTCCAGGGCGAAGTGACCGTCATGTTCGTATCGCTTACG
JMSF043H19+ TTAAATGTTAGTCACAATCAACTCCAGGGCGAAGTGACCGTCATGTTCGTATCGCTTACG
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consensus TTAAATGTTAGTCACAATCAACTCCAGGGCGAAGTGACCGTCATGTTCGTATCGCTTACG

. : . : . : . : . : . :
JMSF045O23+ AACCTGTCGACACTGGATTTCTCTTTTAATTCTCTGGCTGGTAATATTCCTCAAACTTTC
JMFS077E09+ AACCTGTCGACACTGGATTTCTCTTTTAATTCTCTGGCTGGTAATATTCCTCAAACTTTC
JMFF024J17+ AACCTGTCGA
JMFF010L15+ AACCTGTCGACACTGGATTTCTCTTTTAATTCTCTGGCTGGTAATATTCCTCAAACTTTC
JMSF043H19+ AACCTGTCGACACTGGATTTCTCTTTTAATTCTCTGGCTGGTAATATTCCTCAAACTTTC
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consensus AACCTGTCGACACTGGATTTCTCTTTTAATTCTCTGGCTGGTAATATTCCTCAAACTTTC

. : . : . : . : . : . :
JMSF045O23+ AGCTCGCTTACAAATATGAAAAACATGTATTTGCAGAATAACGTGTTTACTGGAACTATT
JMFS077E09+ AGCTCGCTTACAAATATGAAAAACATGTATTTGCAGAATAACGTGTTTACTGGAACTAT
JMFF010L15+ AGCTCGCTTACAAATATGAAAAACATGTATTTGCAGAATAACGTGTTTACTGGAACTATT
JMSF043H19+ AGCTCGCTTACAAATATGAAAAACATGTATTTGCAGAATAACGTGTTTACTGGAACTATT
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consensus AGCTCGCTTACAAATATGAAAAACATGTATTTGCAGAATAACGTGTTTACTGGAACTATT

. : . : . : . : . : . :
JMSF045O23+ GATGTTCTTGCAAATCTTCCCCTCGATAATCTAA
JMFF010L15+ GATGTTCTTGCAAATCTTC
JMSF043H19+ GATGTTCTTGCAAATCTTCCCCTCGATAATCTAAATGTCGAGAACAACCATTTTACGGGA
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consensus GATGTTCTTGCAAATCTTCCCCTCGATAATCTAAATGTCGAGAACAACCATTTTACGGGA

. : . : . : . : . : . :
JMSF043H19+ TGGATCCCTCCACAGTTGCAAGGCATAAACAGTTTACAAACGGGTGGTAATTCATGGAAC
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consensus TGGATCCCTCCACAGTTGCAAGGCATAAACAGTTTACAAACGGGTGGTAATTCATGGAAC

. : . : . : . : . : . :
JMSF043H19+ TCGGG
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consensus TCGGG