Alignment Contig 5268

                          .    :    .    :    .    :    .    :    .    :    .    :

JMSF044N18+ TTGGGGACGGACTGACCTAACCAATACAATCCCTTTTCCTTCGCAATCGCTAAGCTCACA
JMSF018I01+ GGGGACGGACTGACCTAACCAATACAATCCCTTTTCCTTCGCAATCGCTAAGCTCACA
JMSF015E13+ CACA
JMFS051H11+ TGACCTAACCAATACAATCCCTTTTCCTTCGCAATCGCTAAGCTCACA
JMSF037E11+ AAGCTCACA
JMSF028I02+ GGGGACGGACTGACCTAACCAATACAATCCCTTTTCCTTCGCAATCGCTAAGCTCACA
JMSF041A10+ AAGCTCACA
____________________________________________________________
consensus TTGGGGACGGACTGACCTAACCAATACAATCCCTTTTCCTTCGCAATCGCTAAGCTCACA

. : . : . : . : . : . :
JMSF044N18+ ATCTCTCTCTATCTCTCTCTCTATAAGTCTATAATTCGTCTCTTTTCAATAACACGGTGT
JMSF018I01+ ATCTCTCTCTATCTCTCTCTCTATAAGTCTATAATTCGTCTCTTTTCAATAACACGGTGT
JMSF015E13+ ATCTCTCTCTATCTCTCTCTCTATAAGTCTATAATTCGTCTCTTTTCAATAACACGGTGT
JMFS051H11+ ATCTCTTTCTATCTCTCTCTCTATAAGTCTATAATTCGTCTCTTTTCAATAACACGGTGT
JMSF037E11+ ATCTCTCTCTATCTCTCTCTCTATAAGTCTATAATTCGTCTCTTTTCAATAACACGGTGT
JMSF028I02+ ATCTCTCTCTATCTCTCTCTCTATAAGTCTATAATTCGTCTCTTTTCAATAACACGGTGT
JMSF041A10+ ATCTCTCTCTATCTCTCTCTCTATAAGTCTATAATTCGTCTCTTTTCAATAACACGGTGT
____________________________________________________________
consensus ATCTCTCTCTATCTCTCTCTCTATAAGTCTATAATTCGTCTCTTTTCAATAACACGGTGT

. : . : . : . : . : . :
JMSF044N18+ TAAAACCTAGAGTGAATCATAGTTTTGGAATTGTGTCATGGAATCGAGAGGGTCGTCGCA
JMSF018I01+ TAAAACCTAGAGTGAATCATAGTTTTGGAATTGTGTCATGGAATCGAGAGGGTCGTCGCA
JMSF015E13+ TAAAACCTAGAGTGAATCATAGTTTTGGAATTGTGTCATGGAATCGAGAGGGTCGTCGCA
JMFS051H11+ TAAAACCTAGAGTGAATCATAGTTTTGGAATTGTGTCATGGAATCGAGAGGGTCGTCGCA
JMSF037E11+ TAAAACCTAGAGTGAATCATAGTTTTGGAATTGTGTCATGGAATCGAGAGGGTCGTCGCA
JMSF028I02+ TAAAACCTAGAGTGAATCATAGTTTTGGAATTGTGTCATGGAATCGAGAGGGTCGTCGCA
JMSF041A10+ TAAAACCTAGAGTGAATCATAGTTTTGGAATTGTGTCATGGAATCGAGAGGGTCGTCGCA
____________________________________________________________
consensus TAAAACCTAGAGTGAATCATAGTTTTGGAATTGTGTCATGGAATCGAGAGGGTCGTCGCA

. : . : . : . : . : . :
JMSF044N18+ GCTATTGGCGCCGGGGTTCCGGTTCCACCCCACCGACGAGGAGCTCGTCTTCTACTATCT
JMSF018I01+ GCTATTGGCGCCGGGGTTCCGGTTCCACCCCACCGACGAGGAGCTCGTCTTCTACTATCT
JMSF015E13+ GCTATTGGCGCCGGGGTTCCGGTTCCACCCCACCGACGAGGAGCTCGTCTTCTACTATCT
JMFS051H11+ GCTATTGGCGCCGGGGTTCCGGTTCCACCCCACCGACGAGGAGCTCGTCTTCTACTATCT
JMSF037E11+ GCTATTGGCGCCGGGGTTCCGGTTCCACCCCACCGACGAGGAGCTCGTCTTCTACTATCT
JMSF028I02+ GCTATTGGCGCCGGGGTTCCGGTTCCACCCCACCGACGAGGAGCTCGTCTTCTACTATCT
JMSF041A10+ GCTATTGGCGCCGGGGTTCCGGTTCCACCCCACCGACGAGGAGCTCGTCTTCTACTATCT
____________________________________________________________
consensus GCTATTGGCGCCGGGGTTCCGGTTCCACCCCACCGACGAGGAGCTCGTCTTCTACTATCT

. : . : . : . : . : . :
JMSF044N18+ CCGGCGTAGGGTTTGCGCTAAGCCCCTCCGCTTTGATGCCATCTCCGAGATCGATATCTA
JMSF018I01+ CCGGCGTAGGGTTTGCGCTAAGCCCCTCCGCTTTGATGCCATCTCC-AGATCGATATCTA
JMSF015E13+ CCGGCGTAGGGTTTGCGCTAAGCCCCTCCGCTTTGATGCCATCTCCGAGATCGATATCTA
JMFS051H11+ CCGGCGTAGGGTTTGCGCTAAGCCCCTCCGCTTTGATGCCATCTCCGAGATCGATATCTA
JMSF037E11+ CCGGCGTAGGGTTTGCGCTAAGCCCCTCCGCTTTGATGCCATCTCCGAGATCGATATCTA
JMSF028I02+ CCGGCGTAGGGTTTGCGCTAAGCCCCTCCGCTTTGATGCCATCTCCGAGATCGATATCTA
JMSF041A10+ CCGGCGTAGGGTTTGCGCTAAGCCCCTCCGCTTTGATGCCATCTCCGAGATCGATATCTA
____________________________________________________________
consensus CCGGCGTAGGGTTTGCGCTAAGCCCCTCCGCTTTGATGCCATCTCCGAGATCGATATCTA

. : . : . : . : . : . :
JMSF044N18+ CAAGGTCGAGCCTTGGGATCTCCCAGGTTTGTCAAGGCTGAAGACCAGAGATCTCGAGTG
JMSF018I01+ CAAGGTCGAGCCTTGGGATCTCCCAGGT
JMSF015E13+ CAAGGTCGAGCCTTGGGATCTCCCAGGTTTGTCAAGGCTGAAGACCAGAGATCTCGAGTG
JMFS051H11+ CAAGGTCGAGCCTTGGGATCTCCCAGGTTTGTCAAGGCTGAAGACCAGAGATCTCGAGTG
JMSF037E11+ CAAGGTCGAGCCTTGGGATCTCCCAGGTTTGTCAAGGCTGAAGACCAGAGATCTCGAGTG
JMSF028I02+ CAAGGTCGAGCCTTGGGATCTCCCAGGTTTGTCAAGGCTGAAGACCAGAGATCTCGAGTG
JMSF041A10+ CAAGGTCGAGCCTTGGGATCTCCCAGGTTTGTCAAGGCTGAAGACCAGAGATCTCGAGTG
____________________________________________________________
consensus CAAGGTCGAGCCTTGGGATCTCCCAGGTTTGTCAAGGCTGAAGACCAGAGATCTCGAGTG

. : . : . : . : . : . :
JMSF044N18+ GTACTTCTTCAGTATGCTTGATAAGAAGTATGGCAATGGTTCAAGGACTAACCGGGCAAC
JMSF015E13+ GTACTTCTTCAGTATGCTTGATAAGAAGTATGGCAATGGTTCAAGGACTAACCGGGCAAC
JMFS051H11+ GTACTTCTTCAGTATGCTTGATAAGAAGTATGGCAATGGTTCAAGGACTAACCGGGCAAC
JMSF037E11+ GTACTTCTTCAGTATGCT-GATAAGAAGTATGGCAATGGTTCAAGGACTAACCGGGCAAC
JMSF028I02+ GTACTTCTTCAGTATGCTTGATAAGAAGTATGGCAATGGTTCAAGGACTAACCGGGCAAC
JMSF041A10+ GTACTTCTTCAGTATGCTTGATAAGAAGTATGGCAATGGTTCAAGGACTAACCGGGCAAC
____________________________________________________________
consensus GTACTTCTTCAGTATGCTTGATAAGAAGTATGGCAATGGTTCAAGGACTAACCGGGCAAC

. : . : . : . : . : . :
JMSF044N18+ TGAAAAAGGGTACTGGAAGACTACTGGGAAGGACAGGGCTGTCAATCATCGGTCTAAGGT
JMSF015E13+ TGAAAAAGGGTACTGGAAGACTACTGGGAAGGACAGGGCTGTCAATCATCGGTCTAAGGT
JMFS051H11+ TGAAAAAGGGTACTGGAAGACTACTGGGAAGGACAGGGCTGTCAATCATCGGTCTAAGGT
JMSF037E11+ TGAAAAAGGGTACTGGAAGACTACTGGGAAGGACAGGGCTGTCAATCATCGGTCTAAGGT
JMSF028I02+ TGAAAAAGGGTACTGGAAGACTACTGGGAAGGACAGGGCTGTCAATCATCGGTCTAAGGT
JMSF041A10+ TGAAAAAGGGTACTGGAAGACTACTGGGAAGGACAGGGCTGTCAATCATCGGTCTAAGGT
____________________________________________________________
consensus TGAAAAAGGGTACTGGAAGACTACTGGGAAGGACAGGGCTGTCAATCATCGGTCTAAGGT

. : . : . : . : . : . :
JMSF044N18+ TGTGGGGATGAAGAAGACTCTGGTATATCATAGTGGTCGGGCTCCAAAAGGTCAGAGAAC
JMSF015E13+ TGTGGGGATGAAGAAGACTCTGGTATATCATAGTGGTCGGGCTCCNAAAGGTCAGAGAAC
JMFS051H11+ TGTGGGGATGAAGAAGACTCTGGTATATCATAGTGGTCGGGCTCCAAAAGGTCAGAGAAC
JMSF037E11+ TGTGGGGATGAAGAAGACTCTGGTATATCATAGTGGTCGGGCTCCAAAAGGTCAGAGAAC
JMSF028I02+ TGTGGGGATGAAGAAGACTCTGGTATATCATAGTGGTCGGGCTCCAAAAGGTCAGAGAAC
JMSF041A10+ TGTGGGGATGAAGAAGACTCTGGTATATCATAGTGGTCGGGCTCCAAAAGGTCAGAGAAC
____________________________________________________________
consensus TGTGGGGATGAAGAAGACTCTGGTATATCATAGTGGTCGGGCTCCAAAAGGTCAGAGAAC

. : . : . : . : . : . :
JMSF044N18+ TAATTGGGTGATGCATGAGTACAGGCTTGTAGATGAGGATTTAAGTAAAGCAGGAATTGT
JMSF015E13+ TAATTGGGTGATGCATGAGTACAGGCTTGTAGATGA
JMFS051H11+ TAATTGGGTGATGCATGAGTACAGGCTTGTAGATGAGGATTTAAGTA
JMSF037E11+ TAATTGGGTGATGCATGAGTACAGGCTTGTAGATGAGGATTTAAGTAAAGCAGGAATTGT
JMSF028I02+ TAATTGGGTGATGCATGAGTACAGGCTTGTAGATGAGGATTTAAGTAAAGCAGGAATTGT
JMSF041A10+ TAATTGGGTGATGCATGAGTACAGGCTTGTAGATGAGGATTTAAGTAAAGCAGGAATTGT
____________________________________________________________
consensus TAATTGGGTGATGCATGAGTACAGGCTTGTAGATGAGGATTTAAGTAAAGCAGGAATTGT

. : . : . : . : . : . :
JMSF044N18+ TCAGGATGCATTTGTGTTGTGCAGAGTATTTCAAAAAAGTGGGTCAGGGCCAAAGAATGG
JMSF037E11+ TCAGGATGCATTTGTGTTGTGCAGAGTATTTCAAAAAAGTGGGTCAGGGCCAAAGAATGG
JMSF028I02+ TCAGGATGCATTTGTGTTGTGCAGA
JMSF041A10+ TCAGGATGCATTTGTGTTGTGCAGAGTATTTCAAAAAAGTGGGTCAGGGCCAAAGAATGG
____________________________________________________________
consensus TCAGGATGCATTTGTGTTGTGCAGAGTATTTCAAAAAAGTGGGTCAGGGCCAAAGAATGG

. : . : . : . : . : . :
JMSF044N18+ GGAACAGTATGGAGCACCTTTCGTTGA
JMSF037E11+ GGAACAGTATGGAGCACCTTTCGTTGA
JMSF041A10+ GGAACAGTATGGAGCACCTTTCGTTGAGGAAGAGTGGGAGGATGATGTGTTAGCAATGGT
____________________________________________________________
consensus GGAACAGTATGGAGCACCTTTCGTTGAGGAAGAGTGGGAGGATGATGTGTTAGCAATGGT

. : . : . : . : . : . :
JMSF041A10+ CCCTAAGGCAGATTTGCCTGATGAAGCAGAACTTGCAGATGATATCTTTCTGGATGGAGA
____________________________________________________________
consensus CCCTAAGGCAGATTTGCCTGATGAAGCAGAACTTGCAGATGATATCTTTCTGGATGGAGA

. : . : . : . : . : . :
JMSF041A10+ TGACCTTGAG
____________________________________________________________
consensus TGACCTTGAG