Alignment Contig 5249

                          .    :    .    :    .    :    .    :    .    :    .    :

JMSF041E17+ GGCCTACGCGTTCCTCATTCTTTTCGTCTTCTCTTTCAATTAAACCCAACAGAATAATAG
JMSF010H15+ ATTCTTTTCGTCTTCTCTTTCAATTAAACCCAACAGAATAATAG
JMSF042L07+ ATTCTTTTCGTCTTCTCTTTCAATTAAACCCAACAGAATAATAG
JMSF044P23+ ATTCTTTTCGTCTTCTCTTTCAATTAAACCCAACAGAATAATAG
____________________________________________________________
consensus GGCCTACGCGTTCCTCATTCTTTTCGTCTTCTCTTTCAATTAAACCCAACAGAATAATAG

. : . : . : . : . : . :
JMSF041E17+ AGTGCAGTTCAGAGCAGAGCCCTAGTGCTTTGTGTTCAGAGGAATTCAAGGTTTCTCAGA
JMSF010H15+ AGTGCAGTTCAGAGCAGAGCCCTAGTGCTTTGTGTTCAGAGGAATTCAAGGTTTCTCAGA
JMSF042L07+ AGTGCAGTTCAGAGCAGAGCCCTAGTGCTTTGTGTTCAGAGGAATTCAAGGTTTCTCAGA
JMSF044P23+ AGTGCAGTTCAGAGCAGAGCCCTAGTGCTTTGTGTTCAGAGGAATTCAAGGTTTCTCAGA
____________________________________________________________
consensus AGTGCAGTTCAGAGCAGAGCCCTAGTGCTTTGTGTTCAGAGGAATTCAAGGTTTCTCAGA

. : . : . : . : . : . :
JMSF041E17+ CACACGGGATTAATGGCGACCACAGCACAAACTCGGCGCTCTTCCTCGGCTTCCAATGCA
JMSF010H15+ CACACGGGATTAATGGCGACCACAGCACAAACTCGGCGCTCTTCCTCGGCTTCCAATGCA
JMSF042L07+ CACACGGGATTAATGGCGACCACAGCACAAACTCGGCGCTCTTCCTCGGCTTCCAATGCA
JMSF044P23+ CACACGGGATTAATGGCGACCACAGCACAAACTCGGCGCTCTTCCTCGGCTTCCAATGCA
____________________________________________________________
consensus CACACGGGATTAATGGCGACCACAGCACAAACTCGGCGCTCTTCCTCGGCTTCCAATGCA

. : . : . : . : . : . :
JMSF041E17+ GCGGCCAAGAGGCAGGCGGCGGCGGCGGCGGAAAATCGCCACGGAAAGGTCGCGGCGGCC
JMSF010H15+ GCGGCCAAGAGGCAGGCGGCGGCGGCGGCGGAAAATCGCCACGGAAAGGTCGCGGCGGCC
JMSF042L07+ GCGGCCAAGAGGCAGGCGGCGGCGGCGGCGGAAAATCGCCACGGAAAGGTCGCGGCGGCC
JMSF044P23+ GCGGCCAAGAGGCAGGCGGCGGCGGCGGCGGAAAATCGCCACGGAAAGGTCGCGGCGGCC
____________________________________________________________
consensus GCGGCCAAGAGGCAGGCGGCGGCGGCGGCGGAAAATCGCCACGGAAAGGTCGCGGCGGCC

. : . : . : . : . : . :
JMSF041E17+ GCCGACCAACGCCTGGCCCATAAACGCCCCGCGCTCACCAACATCACCAACCAGAGGACC
JMSF010H15+ GCCGACCAACGCCTGGCCCATAAACGCCCCGCGCTCACCAACATCACCAACCAGAGGACC
JMSF042L07+ GCCGACCAACGCCTGGCCCATAAACGCCCCGCGCTCACCAACATCACCAACCAGAGGACC
JMSF044P23+ GCCGACCAACGCCTGGCCCATAAACGCCCCGCGCTCACCAACATCACCAACCAGAGGACC
____________________________________________________________
consensus GCCGACCAACGCCTGGCCCATAAACGCCCCGCGCTCACCAACATCACCAACCAGAGGACC

. : . : . : . : . : . :
JMSF041E17+ GGCTCTCTGCTTTCCTCGCGAAGCACCTTCTCCGAATCCTCGAGCATTGCGCCCTGCACA
JMSF010H15+ GGCTCTCTGCTTTCCTCGCGAAGCACCTTCTCCGAATCCTCGAGCATTGCGCCCTGCACA
JMSF042L07+ GGCTCTCTGCTTTCCTCGCGAAGCACCTTCTCCGAATCCTCGAGCATTGCGCCCTGCACA
JMSF044P23+ GGCTCTCTGCTTTCCTCGCGAAGCACCTTCTCCGAATCCTCGAGCATTGCGCCCTGCACA
____________________________________________________________
consensus GGCTCTCTGCTTTCCTCGCGAAGCACCTTCTCCGAATCCTCGAGCATTGCGCCCTGCACA

. : . : . : . : . : . :
JMSF041E17+ TCGAAGAATGTTGGTATCAAGAAGAGTTCTTCTAGTTCTACGGGTAATGCTGGATTCTTA
JMSF010H15+ TCGAAGAATGTTGGTATCAAGAAGAGTTCTTCTAGTTCTACGGGTAATGCTGGATTCTTA
JMSF042L07+ TCGAAGAATGTTGGTATCAAGAAGAGTTCTTCTAGTTCTACGGGTAATGCTGGATTCTTA
JMSF044P23+ TCGAAGAATGTTGGTATCAAGAAGAGTTCTTCTAGTTCTACGGGTAATGCTGGATTCTTA
____________________________________________________________
consensus TCGAAGAATGTTGGTATCAAGAAGAGTTCTTCTAGTTCTACGGGTAATGCTGGATTCTTA

. : . : . : . : . : . :
JMSF041E17+ GGGACTTCGATCGTGCCAACATCCACCCTTGTGAAACCTATCACAGTACCCAGTAAGGGA
JMSF010H15+ GGGACTTCGATCGTGC
JMSF042L07+ GGGACTTCGATCGTGCCAACATCCACCCTTGTGAAACCTATCACAGTACCCAGTAAGGGA
JMSF044P23+ GGGACTTCGATCGTGCCAACATCCACCCTTGTGAAACCTATCACAGTACCCAGTAAGGGA
____________________________________________________________
consensus GGGACTTCGATCGTGCCAACATCCACCCTTGTGAAACCTATCACAGTACCCAGTAAGGGA

. : . : . : . : . : . :
JMSF041E17+ CCATCTGCTATTGGAAGTGATGCTATTCTCCAGAAGGCCACCCTCCCTCCTGTCACATGC
JMSF042L07+ CCATCTGCTATTGGAAGTGATGCTATTCTCCAGAAGGCCACCCTCCCTCCTGTCACATGC
JMSF044P23+ CCATCTGCTATTGGAAGTGATGCTATTCTCCAGAAGGCCACCCTCCCTCCTGTCACATGC
____________________________________________________________
consensus CCATCTGCTATTGGAAGTGATGCTATTCTCCAGAAGGCCACCCTCCCTCCTGTCACATGC

. : . : . : . : . : . :
JMSF041E17+ AGCATGGATAATTCTCCAGCTAAGTCGGATGGGATGACGGCTTCTATGGATGAATCCATG
JMSF042L07+ AGCATGGATAATTCTCCAGCTAAGTCGGATGGGATGACGGCTTCTATGGATGAATCCATG
JMSF044P23+ AGCATGGATAATTCTCCAGCTAAGTCGGATGGGATGACGGCTTCTATGGATGAATCCATG
____________________________________________________________
consensus AGCATGGATAATTCTCCAGCTAAGTCGGATGGGATGACGGCTTCTATGGATGAATCCATG

. : . : . : . : . : . :
JMSF041E17+ TCTCCTTGTGATTCACTAAGAAGTCCAGAAGTTGAATATATTGACAACAATGAAACTGCT
JMSF042L07+ TCTCCTTGTGATTCACTAAGAAGTCCAGAAGTTGAATATATTAACAACA-TGAAACTGCT
JMSF044P23+ TCTCCTTGTGATTCACTAAGAAGTCCAGAAGTTGAATATATTGACAACAATGAAACTGCT
____________________________________________________________
consensus TCTCCTTGTGATTCACTAAGAAGTCCAGAAGTTGAATATATTGACAACAATGAAACTGCT

. : . : . : . : . : . :
JMSF041E17+ GGAGTTCATTCCATTGAGAAGAAGGCATCTAGTGCGCTCTATATTTCGGAACACCAAGAA
JMSF042L07+ GGAGTTCATTCCATTGAGAAGAAGGCATCTAGTGCGCTCTATATTTCGGAACACCAAGAA
JMSF044P23+ GGAGTTCATTCCATTGAGAAGAAGGCATCTAGTGCGCTCTATATTTCGGAACACCAAGAA
____________________________________________________________
consensus GGAGTTCATTCCATTGAGAAGAAGGCATCTAGTGCGCTCTATATTTCGGAACACCAAGAA

. : . : . : . : . : . :
JMSF041E17+ ACAACAGGAAATATATGCAAGAGAGACATAATTGTGGACATAGAGTCAAGGGATCGCATT
JMSF042L07+ ACAAC
JMSF044P23+ ACAACAGGAAATATATGCAAGAGAGACATAATTGTGGACA
____________________________________________________________
consensus ACAACAGGAAATATATGCAAGAGAGACATAATTGTGGACATAGAGTCAAGGGATCGCATT

. : . : . : . : . : . :
JMSF041E17+ CCTAACATTGATGATAATCTTGAGGACCCTCAATTCTGTGCAACCATGGCCTGTGATATC
____________________________________________________________
consensus CCTAACATTGATGATAATCTTGAGGACCCTCAATTCTGTGCAACCATGGCCTGTGATATC

. : . : . : . : . : . :
JMSF041E17+ TACAAGCACTTGCGAGCATCTGA
____________________________________________________________
consensus TACAAGCACTTGCGAGCATCTGA