Alignment Contig 5233

                          .    :    .    :    .    :    .    :    .    :    .    :

JMSF039M13+ TGGTGGACCGTGATGCGCGTACCGGAAAAGGATCTCCGATTCCTTGTCTGTTAATGTGAG
JMSF028N18+ GTACCGGAAAAGGATCTCCGATTCCTTGTCTGTTAATGTGAG
JMFS008C06+ GATCTCCGATTCCTTGTCTGTTAATGTGAG
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consensus TGGTGGACCGTGATGCGCGTACCGGAAAAGGATCTCCGATTCCTTGTCTGTTAATGTGAG

. : . : . : . : . : . :
JMSF039M13+ CTAGCGGCATTAGAGCCACCGTGAACTACAAAACCGCCATGGCCCGTCGTACATGATTCC
JMSF028N18+ CTAGCGGCATTAGAGCCACCGTGAACTACAAAACCGCCATGGCCCGTCGTACATGATTCC
JMFS008C06+ CTAGCGGCATTAGAGCCACCGTGAACTACAAAACCGCCATGGCCCGTCGTACATGATTCC
JMSF001O17+ ACTACAAAACCGCCATGGCCCGTCGTACATGATTCC
JMSF024I14+ GTGAACTACAAAACCGCCATGGCCCGTCGTACATGATTCC
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consensus CTAGCGGCATTAGAGCCACCGTGAACTACAAAACCGCCATGGCCCGTCGTACATGATTCC

. : . : . : . : . : . :
JMSF039M13+ TTCTGTCACCGGGTCCCATTACACTCTCCGAACAATTCCGACAGCGACGTCTGTTGGCAC
JMSF028N18+ TTCTGTCACCGGGTCCCATTACACTCTCCGAACAATTCCGACAGCGACGTCTGTTGGCAC
JMFS008C06+ TTCTGTCACCGGGTCCCATTACACTCTCCGAACAATTCCGACAGCGACGTCTGTTGGCAC
JMSF001O17+ TTCTGTCACCGGGTCCCATTACACTCTCCGAACAATTCCGACAGCGACGTCTGTTGGCAC
JMSF024I14+ TTCTGTCACCGGGTCCCATTACACTCTCCGAACAATTCCGACAGCGACGTCTGTTGGCAC
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consensus TTCTGTCACCGGGTCCCATTACACTCTCCGAACAATTCCGACAGCGACGTCTGTTGGCAC

. : . : . : . : . : . :
JMSF039M13+ AATATCGTTTCACCTCGATCGCGTTTCTTCAGCCACCGATTTTCTTCCACGTGATTTTAT
JMSF028N18+ AATATCGTTTCACCTCGATCGCGTTTCTTCAGCCACCGATTTTCTTCCACGTGATTTTAT
JMFS008C06+ AATATCGTTTCACCTCGATCGCGTTTCTTCAGCCACCGATTTTCTTCCACGTGATTTTAT
JMSF001O17+ AATATCGTTTCACCTCGATCGCGTTTCTTCAGCCACCGATTTTCTTCCACGTGATTTTAT
JMSF024I14+ AATATCGTTTCACCTCGATCGCGTTTCTTCAGCCACCGATTTTCTTCCACGTGATTTTAT
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consensus AATATCGTTTCACCTCGATCGCGTTTCTTCAGCCACCGATTTTCTTCCACGTGATTTTAT

. : . : . : . : . : . :
JMSF039M13+ TAATCTCGTTGCTCCTTTTTAGGAATAACGTCGAACACCTTGTGCTCCTTCTGTTTTAGG
JMSF028N18+ TAATCTCGTTGCTCCTTTTTAGGAATAACGTCGAACACCTTGTGCTCCTTCTGTTTTAGG
JMFS008C06+ TAATCTCGTTGCTCCTTTTTAGGAATAACGTCGAACACCTTGTGCTCCTTCTGTTTTAGG
JMSF001O17+ TAATCTCGTTGCTCCTTTTTAGGAATAACGTCGA
JMSF024I14+ TAATCTTGTTGCTCCTTTTTAGGAATAACGTCGAACACCTTGTGCTCCTTCTGTTTTAGG
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consensus TAATCTCGTTGCTCCTTTTTAGGAATAACGTCGAACACCTTGTGCTCCTTCTGTTTTAGG

. : . : . : . : . : . :
JMSF039M13+ ATCTTTTTTCCTGTTTTTGATTGGACTTAGAGGTGATGGAGAGCTCAATTTGTCGGCCCA
JMSF028N18+ ATCTTTTTTCCTGTTTTTGATTGGACTTAGAGGTGATGGAGAGCTCAATTTGTCGGCCCA
JMFS008C06+ ATCTTTTTTCCTGTTTTTGATTGGACTTAGAGGTGATGGAGAGCTCAATTTGTCGGCCCA
JMSF024I14+ ATCTTTTTTCCTGTTTTTGATTGGACTTAGAGGTGATGGAGAGCTCAATTTGTCGGCCCA
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consensus ATCTTTTTTCCTGTTTTTGATTGGACTTAGAGGTGATGGAGAGCTCAATTTGTCGGCCCA

. : . : . : . : . : . :
JMSF039M13+ CGGTTCCCCTCCTCGCATGTCGGCCTAGAAAATCTGTCCAGTCTGGAGGTTCGGCTGATT
JMSF028N18+ CGGTTCCCCTCCTCGCATGTCGGCCTAGAAAATCTGTCCAGTCTGGAGGTTCGGCTGATT
JMFS008C06+ CGGTTCCCCTCCTCGCATGTCGGCCTAGAAAATCTGTCCAGTCTGGAGGTTCGGCTGATT
JMSF024I14+ CGGTTCCCCTCCTCGCATGTCGGCCTAGAAAATCTGTCCAGTCTGGAGGTTCGGCTGATT
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consensus CGGTTCCCCTCCTCGCATGTCGGCCTAGAAAATCTGTCCAGTCTGGAGGTTCGGCTGATT

. : . : . : . : . : . :
JMSF039M13+ CTCTGATTGGGTTTCGTAGGATTTTGAGTGATGATATCGGGAGGCTGTCTCTGCGCCATG
JMSF028N18+ CTCTGATTGGGTTTCGTAGGATTTTGAGTGATGATATCGGGAGGCTGTCTCTGCGCCATG
JMFS008C06+ CTCTGATTGGGTTTCGTAGGATTTTGAGTGATGATATCGGGAGGCTGTCTCTGCGCCATG
JMSF024I14+ CTCTGATTGGGTTTCGTAGGATTTTGAGTGATGATATCGGGAGGCTGTCTCTGCGCCATG
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consensus CTCTGATTGGGTTTCGTAGGATTTTGAGTGATGATATCGGGAGGCTGTCTCTGCGCCATG

. : . : . : . : . : . :
JMSF039M13+ GCCGTAGTAGACACCATATTTGCAGGATCGAACGTGTGAAAGCTACGGGTAAAAGCTCCG
JMSF028N18+ GCCGTAGTAGACACCATATTTGCAGGATCGAACGTGTGAAAGCTACGGGTAAAAGCTCCG
JMFS008C06+ GCCGTAGTAGACACCATATTTGCAGGATCGAACGTGTGAAAGCTACGGGTAAAAGCTCCG
JMSF024I14+ GCCGTAGTAGACACCATATTTGCAGGATCGAACGTGTGAAAGCTACGGGTAAAAGCTCCG
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consensus GCCGTAGTAGACACCATATTTGCAGGATCGAACGTGTGAAAGCTACGGGTAAAAGCTCCG

. : . : . : . : . : . :
JMSF039M13+ CCGGGGGAGATGCCGGGAATGAAGAAGAAGAAGAAGAAGAAGAGGATGCTCTGCAGGCTA
JMSF028N18+ CCGGGGGAGATGCCGGGAATGAAGAAGAAGAAGAAGAAGAAGAGGATGCTCTGCAGGCTA
JMFS008C06+ CCGGGGGAGATGCCGGGAATGAAGAAGAAGAAGAAGAAGAAGAGGATGCTCTGCAGGCTA
JMSF024I14+ CCGGGGGAGATGCCGGGAATGAAGAAGAAGAAGAAGAAGAAGAGGATGCTCTGCAGGCTA
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consensus CCGGGGGAGATGCCGGGAATGAAGAAGAAGAAGAAGAAGAAGAGGATGCTCTGCAGGCTA

. : . : . : . : . : . :
JMSF039M13+ CGATTAAAAAGAGCCAGAAGGTACTGGCCATGCAAAATGACCTAC
JMSF028N18+ CGATTAAAAAGAGCCAGAAGGTACTGGCCATGCAAAATGACCTACTCCGACAGATTGCTG
JMFS008C06+ CGATTAAAAAGAGCCAGAAGGTACTGGCCATGCAAAATGACCTAC
JMSF024I14+ CGATTAAAAAGAGCCAGAAGGTACTGGCCATGCAAAATGACCTACTCCGACAGATTGCTG
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consensus CGATTAAAAAGAGCCAGAAGGTACTGGCCATGCAAAATGACCTACTCCGACAGATTGCTG

. : . : . : . : . : . :
JMSF028N18+ AAAGAAA
JMSF024I14+ AAAGAAAGGAATTAGTGTCTAAAATAAGAAGTAGCATTGTAGACCCAG
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consensus AAAGAAAGGAATTAGTGTCTAAAATAAGAAGTAGCATTGTAGACCCAG