Alignment Contig 5227

                          .    :    .    :    .    :    .    :    .    :    .    :

JMSF038K06+ GGAGAGAGAGAGAGAGAGAGAGAGATGCAGAGAGTGGTAGCAGAAATCAAGTGAAACGAA
JMFF018H12+ GAGAGAGAGAGAGAGAGAGAGATGCAGAGAGTGGTAGCAGAAATCAAGTGAAACGAA
JMFF029D10+ GAGAGAGAGAGAGAGAGAGAGATGCAGAGAGTGGTAGCAGAAATCAAGTGAAACGAA
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consensus GGAGAGAGAGAGAGAGAGAGAGAGATGCAGAGAGTGGTAGCAGAAATCAAGTGAAACGAA

. : . : . : . : . : . :
JMSF038K06+ TTTAATTGTCACAACATCCAAGCCAAGTTAGCCAACCCACCACCACCCCTTCTCTTTTCC
JMFF018H12+ TTTAATTGTCACAACATCCAAGCCAAGTTAGCCAACCCACCACCACCCCTTCTCTTTTCC
JMFF029D10+ TTTAATTGTCACAACATCCAAGCCAAGTTAGCCAACCCACCACCACCCCTTCTCTTTTCC
JMFF023H11+ AGCCAACCCACCACCACCCCTTCTCTTTTCC
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consensus TTTAATTGTCACAACATCCAAGCCAAGTTAGCCAACCCACCACCACCCCTTCTCTTTTCC

. : . : . : . : . : . :
JMSF038K06+ CCAAGATTTTTCTGATTTTCTCCACTCTCAACTCTCAAGCCCTAGAAATTACTATTCTTA
JMFF018H12+ CCAAGATTTTTCTGATTTTCTCCACTCTCAACTCTCAAGCCCTAGAAATTACTATTCTTA
JMFF029D10+ CCAAGATTTTTCTGATTTTCTCCACTCTCAACTCTCAAGCCCTAGAAATTACTATTCTTA
JMFF023H11+ CCAAGATTTTTCTGATTTTCTCCACTCTCAACTCTCAAGCCCTAGAAATTACTATTCTTA
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consensus CCAAGATTTTTCTGATTTTCTCCACTCTCAACTCTCAAGCCCTAGAAATTACTATTCTTA

. : . : . : . : . : . :
JMSF038K06+ ATTCTTCTCATTAACACAAACATCACACGCACATAAATGATGCTTTATCTCTTCTTCNTG
JMFF018H12+ ATTCTTCTCATTAACACAAACATCACACGCACATAAATGATGCTTTATCTCTTCTTCNTG
JMFF029D10+ ATTCTTCTCATTAACACAAACATCACACGCACATAAATGATGCTTTATCTCTTCTTCATG
JMFF023H11+ ATTCTTCTCATTAACACAAACATCACACGCACATAAATGATGCTTTATCTCTTCTTCATG
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consensus ATTCTTCTCATTAACACAAACATCACACGCACATAAATGATGCTTTATCTCTTCTTCATG

. : . : . : . : . : . :
JMSF038K06+ GCTTCATAAAGAAGAAGAATCCATTCTTGTGATTCCAGAGGAGCAGACAAAAT-ACATAC
JMFF018H12+ GCTTCATAAAGAAGAAGAATCCATTCTTGTGATTCCAGAGGAGCAGACAAAAT-ACATAC
JMFF029D10+ GCTTCATAAAGAAGAAGAATCCATTCTTGTGATTCCAGAGGAGCAGACAAAAAGACATAC
JMFF023H11+ GCTTCATAAAGAAGAAGAATCCATTCTTGTGATTCCAGAGGAGCAGACAAAAT-ACATAC
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consensus GCTTCATAAAGAAGAAGAATCCATTCTTGTGATTCCAGAGGAGCAGACAAAAT-ACATAC

. : . : . : . : . : . :
JMSF038K06+ TGTGAACTAGAGGCTCAAACCAAGATCAAGANTGGCCTCAGTTTCNTGCCCCAAGCCCAG
JMFF018H12+ TGTGAACTAGAGGCTCAAACCAAGATCAAGAATGGCCTCAGTTTCNTGCCCCAAGCCCAG
JMFF029D10+ TGTGAACTAGAGGCTCAAACCAAGATCAAGAATGGCCTCAGTTTCATGCCCCAAGCCCAG
JMFF023H11+ TGTGAACTAGAGGCTCAAACCAAGATCAAGAATGGCCTCAGTTTCATGCCCCAAGCCCAG
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consensus TGTGAACTAGAGGCTCAAACCAAGATCAAGAATGGCCTCAGTTTCATGCCCCAAGCCCAG

. : . : . : . : . : . :
JMSF038K06+ GTACTTTTTGGCATTCTTTTTCCTCAGTCTCTGCTTCAAATTCNTGTCTGCAGACCCAAA
JMFF018H12+ GTACTTTTTGGCATTCTTTTTCCTCAGTCTCTGCTTCAAATTCNTGTCTGCAGACCCAAA
JMFF029D10+ GTACTTTTTGGCATTCTTTTTCCTCAGTCTCTGCTTCAAATTCATGTCTGCAGACCCAAA
JMFF023H11+ GTACTTTTTGGCATTCTTTTTCCTCAGTCTCTGCTTCAAATTCATGTCTGCAGACCCAAA
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consensus GTACTTTTTGGCATTCTTTTTCCTCAGTCTCTGCTTCAAATTCATGTCTGCAGACCCAAA

. : . : . : . : . : . :
JMSF038K06+ CTTGTCATTTGCTTTCAAGAATTTTGGCAAAGATTCAAACTTTGACTCTCTGATTGCTCT
JMFF018H12+ CTTGTCATTTGCTTTCAAGAATTTTGGCAAAGATTCAAACTTTGACTCTCTGATTGCTCT
JMFF029D10+ CTTGTCATTTGCTTTCAAGAATTTTGGCAAAGATTCAAACTTTGACTCTCTGATTGCTCT
JMFF023H11+ CTTGTCATTTGCTTTCAAGAATTTTGGCAAAGATTCAAACTTTGACTCTCTGATTGCTCT
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consensus CTTGTCATTTGCTTTCAAGAATTTTGGCAAAGATTCAAACTTTGACTCTCTGATTGCTCT

. : . : . : . : . : . :
JMSF038K06+ GTATGGTGACACTAAGGTGGTTAATGATAGTTTGTCTATAGAAATTGATGGTAGTGAAAT
JMFF018H12+ GTATGG
JMFF029D10+ GTATGG
JMFF023H11+ GTATGGTGACACTAAGGTGGTTAATGATAGTTTGTCTATAGAAATTGATGGTAGTGAAAT
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consensus GTATGGTGACACTAAGGTGGTTAATGATAGTTTGTCTATAGAAATTGATGGTAGTGAAAT

. : . : . : . : . : . :
JMSF038K06+ GAGTCCTGGGGCTGGAAGAATCATGAGCAAGAAACCCATTAAGCTTGTTGAGGGAAAACC
JMFF023H11+ GAGTCCTGGGGCTGGAAGAATCATGAGCAAGAAACCCATTAAGCTTGTTGAGGGAAA
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consensus GAGTCCTGGGGCTGGAAGAATCATGAGCAAGAAACCCATTAAGCTTGTTGAGGGAAAACC

. : . : . : . : . : . :
JMSF038K06+ CAGGAAANTGGTGTCTTTTTCCACTTATTTTGCGTTTTCTTTGTCAAGGCTAAGTGGGGA
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consensus CAGGAAANTGGTGTCTTTTTCCACTTATTTTGCGTTTTCTTTGTCAAGGCTAAGTGGGGA

. : . : . : . : . : . :
JMSF038K06+ TGGGCTTGCATTTGTTATGTTACC
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consensus TGGGCTTGCATTTGTTATGTTACC