Alignment Contig 5177

                          .    :    .    :    .    :    .    :    .    :    .    :

JMSF032G07+ GAAACATTGGCTGACTACGAAACCTAGAATCATCATCATTAAAATACCACAAGCTTCCAA
JMFF018D07+ ACCACAAGCTTCCAA
____________________________________________________________
consensus GAAACATTGGCTGACTACGAAACCTAGAATCATCATCATTAAAATACCACAAGCTTCCAA

. : . : . : . : . : . :
JMSF032G07+ TTCAAATATTCTCCTTTTCTTCCTCTTCTTTTTTTCTAATCTAACTTAACTATCTTTGCT
JMFF039C07+ AATCTAACTTAACTATCTTTGCT
JMFF018D07+ TTCAAATATTCTCCTTTTCTTCCTCTTCTTTTCTTCTAATCTAACTTAACTATCTTTGCT
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consensus TTCAAATATTCTCCTTTTCTTCCTCTTCTTTTCTTCTAATCTAACTTAACTATCTTTGCT

. : . : . : . : . : . :
JMSF032G07+ CGATTTCAAATCATTGTTTTTGATTTTCAAGAAGAAAAGCTAGTAGAATTCTTGTGGGGT
JMFF039C07+ CGATTTCAAATCATTGTTTTTGATTTTCAAGAAGAAAAGCTAGTAGAATTCTTGTGGGGT
JMFF018D07+ CGATTTCAAATCATTGTTTTTGATTTTCAAGAAGAAAAGCTAGTAGAATTCTTGTGGGGT
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consensus CGATTTCAAATCATTGTTTTTGATTTTCAAGAAGAAAAGCTAGTAGAATTCTTGTGGGGT

. : . : . : . : . : . :
JMSF032G07+ CTGGTTTCCCTGATGTCCTGAATTACTGTGCCCTTTTTGATGCCGAAGAAGAGTATAATT
JMFF039C07+ CTGGTTTCCCTGATGTCCTGAATTACTGTGCCCTTTTTGATGCCGAAGAAGAGTATAATT
JMFF018D07+ CTGGTTTCCCTGATGTCCTGAATTACTGTGCCCTTTTTGATGCCGAAGAAGAGTATAATT
____________________________________________________________
consensus CTGGTTTCCCTGATGTCCTGAATTACTGTGCCCTTTTTGATGCCGAAGAAGAGTATAATT

. : . : . : . : . : . :
JMSF032G07+ GGAAGCATCAGCAGAAGTTTCTCCGATTCCAATTCGCCCGATAGGGTTCCGGGTTCGGGG
JMFF039C07+ GGAAGCATCAGCAGAAGTTTCTCCGATTCCAATTCGCCCGATAGGGTTCCGGGTTCGGGG
JMFF018D07+ GGAAGCATCAGCAGAAGTTTCTCCGATTCCAATTCGCCCGATAGGGTTCCGGGTTCGGGG
____________________________________________________________
consensus GGAAGCATCAGCAGAAGTTTCTCCGATTCCAATTCGCCCGATAGGGTTCCGGGTTCGGGG

. : . : . : . : . : . :
JMSF032G07+ CCCAGTTTTGCTTCATCTTCTTCGGCAGAGCAAAGGCATTCTTTTTGGTCGGGCTTTAGG
JMFF039C07+ CCCAGTTTTGCTTCATCTTCTTCGGCAGAGCAAAGGCATTCTTTTTGGTCGGGCTTTAGG
JMFF018D07+ CCCAGTTTTGCTTCATCTTCTTCGGCAGAGCAAAGGCATTCTTTTTGGTCGGGCTTTAGG
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consensus CCCAGTTTTGCTTCATCTTCTTCGGCAGAGCAAAGGCATTCTTTTTGGTCGGGCTTTAGG

. : . : . : . : . : . :
JMSF032G07+ GTATCTGCGTTCTCAAGCTCGGGTGCTACGGCAGCTGAGCACTCGAAAGGGTCTCCAAGA
JMFF039C07+ GTATCTGCGTTCTCAAGCTCGGGTGCTACGGCAGCTGAGCACTCGAAAGGGTCTCCAAGA
JMFF018D07+ GTATCTGCGTTCTCAAGCTCGGGTGCTACGGCAGCTGAGCACTCGAAAGAGTCTCCAAGA
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consensus GTATCTGCGTTCTCAAGCTCGGGTGCTACGGCAGCTGAGCACTCGAAAGGGTCTCCAAGA

. : . : . : . : . : . :
JMSF032G07+ AAAGGGGCGTCTAGTTTGATACCAAAGCATTATGCGATTGGTTGGACTTCGGCTTTGAGA
JMFF039C07+ AAAGGGGCGTCTAGTTTGATACCAAAGCATTATGCGATTGGTTGGACTTCGGCTTTGAGA
JMFF018D07+ AAAGGGGCGTCTAGTTTGATACCAAAGCATTATGCGATTGGTTGGACTTCGGCTTTGAGA
JMFF008C10+ GCGATTGGTTGGACTTCGGCTTTGAGA
JMFF008L01+ GCGATTGGTTGGACTTCGGCTTTGAGA
____________________________________________________________
consensus AAAGGGGCGTCTAGTTTGATACCAAAGCATTATGCGATTGGTTGGACTTCGGCTTTGAGA

. : . : . : . : . : . :
JMSF032G07+ AGAGCGATGAACAGTGGCTCTGTGTGGAGAATTTTAGGTTTAAACAAAACTGGGATTCCC
JMFF039C07+ AGAGCGATGAACAGTGGCTCTGTGTGGAGAATTTTAGGNTTAAACAAAACTGGGATTCCC
JMFF018D07+ AGAGCGATGAACAGTGGCTCTGTGTGGAGAATTTTAGGTTTAAACAAAACTGGGATTCCC
JMFF008C10+ AGAGCGATGAACAGTGGCTCTGTGTGGAGAATTTTAGGTTTAAACAAAACTGGGATTCCC
JMFF008L01+ AGAGCGATGAACAGTGGCTCTGTGTGGAGAATTTTAGGTTTAAACAAAACTGGGATTCCC
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consensus AGAGCGATGAACAGTGGCTCTGTGTGGAGAATTTTAGGTTTAAACAAAACTGGGATTCCC

. : . : . : . : . : . :
JMSF032G07+ TCAGTCTCCAATACTGACATTTGGCTTCTCGGCTGCTGCTATAAAGTTGCTCAAGATGAT
JMFF039C07+ TCAGGCTCCAATACTGACNTTTGGCTTCTC
JMFF018D07+ TCAGTCTCCAATACTGACATTTGGCTTCTCGGCTGCTGCTATAAAGTTGCTCAAGATGAT
JMFF008C10+ TCAGTCTCCAATACTGACATTTGGCTTCTCGGCTGCTGCTATAAAGTTGCTCAAGATGAT
JMFF008L01+ TCAGTCTCCAATACTGACATTTGGCTTCTCGGCTGCTGCTATAAAGTTGCTCAAGATGAT
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consensus TCAGTCTCCAATACTGACATTTGGCTTCTCGGCTGCTGCTATAAAGTTGCTCAAGATGAT

. : . : . : . : . : . :
JMSF032G07+ AGTCCATCCACCGAT
JMFF018D07+ AGTCCATCCACCGAT
JMFF008C10+ AGTCCATCCACCGATCCGACTCAGAGCCAGGGATTTGCTTCGTTTGTCGAAGATTTCTCA
JMFF008L01+ AGTCCATCCACCGATCCGACTCAGAGCCAGGGATTTGCTTCGTTTGTCGAAGATTTCTCA
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consensus AGTCCATCCACCGATCCGACTCAGAGCCAGGGATTTGCTTCGTTTGTCGAAGATTTCTCA

. : . : . : . : . : . :
JMFF008C10+ TCCAGGATCTTAATCACTTACCGTAAAGGGTTTGCCCCCATAGGAGAGTCCAAATATACT
JMFF008L01+ TCCAGGATCTTAATCACTTACCGTAAAGGGTTTGCCCCCATAGGAGAGTCCAAATATACT
____________________________________________________________
consensus TCCAGGATCTTAATCACTTACCGTAAAGGGTTTGCCCCCATAGGAGAGTCCAAATATACT

. : . : . : . : . : . :
JMFF008C10+ AATGATTCAGGTTGGGGTTGCATGCTTCGAAGCAGTCAGATGCTTGTTGCTCAGGCATTG
JMFF008L01+ AATGATTCAGGTTGGGGTTGCATGCTTCGAAGCAGTCAGATGCTTGTTGCTCAGGCATTG
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consensus AATGATTCAGGTTGGGGTTGCATGCTTCGAAGCAGTCAGATGCTTGTTGCTCAGGCATTG

. : . : . : . : . : . :
JMFF008C10+ CTTTTCCATCGACTCGGAAGATCATGGAGGAAGTCTTTGGAGAAGTTGCTTGAGCAAAAT
JMFF008L01+ CTTTTCCATCGACTCGGAAGATCATGGAGGAAGTCTTTGGAGAAGTTGCTTGAGCAAAAT
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consensus CTTTTCCATCGACTCGGAAGATCATGGAGGAAGTCTTTGGAGAAGTTGCTTGAGCAAAAT

. : . : . : . : . : . :
JMFF008C10+ TATTTGGAGATATTGAACCTTTTTGGTGATTCAGAGGAATCTGCTTACTCTATCCACAAC
JMFF008L01+ TATTTGGAGATATTGAACCTTTTTGGTGATTCAGAGGAATCTGCTTACTCTATCCACAAC
____________________________________________________________
consensus TATTTGGAGATATTGAACCTTTTTGGTGATTCAGAGGAATCTGCTTACTCTATCCACAAC

. : . : . : . : . : . :
JMFF008C10+ CTTCTTCAAGCTGGAAAGGCATATGATCTTTCCCCTGGTTCGTGGGTTGGCCCATATGCA
JMFF008L01+ CTTCTTCAAGCTGGAAAGGCATATGATCTTTCCCCTGGTTCGTGGGTTGGCCCATATGCA
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consensus CTTCTTCAAGCTGGAAAGGCATATGATCTTTCCCCTGGTTCGTGGGTTGGCCCATATGCA

. : . : . : . : . : . :
JMFF008C10+ ATGTGTCGCACATGGGAAACACTGGCGTGCTGTAAGAGAGAGGACGCTGAAAATGC
JMFF008L01+ ATGTGTCGCACATGGGAAACACTGGCGTGCTGTAA
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consensus ATGTGTCGCACATGGGAAACACTGGCGTGCTGTAAGAGAGAGGACGCTGAAAATGC