Alignment Contig 5118

                          .    :    .    :    .    :    .    :    .    :    .    :

JMSF027C19+ GGACTAGGGTTTTAGGATTAGGCTCCACATAAAATCCCCAGTCTCTGCCGCTTTGGCTAG
JMFF003B02+ GACTAGGGTTTTAGGATTAGGCTCCACATAAAATCCCCAGTCTCTGCCGCTTTGGCTAG
JMFF001I19+ AGGGTTTTAGGATTAGGCTCCACATAAAATCCCCAGTCTCTGCCGCTTTGGCTAG
JMFF047D08+ GACTAGGGTTTTAGGATTAGGCTCCACATAAAATCCCCAGTCTCTGCCGCTTTGGCTAG
JMFF025E03+ GACTAGGGTTTTAGGATTAGGCTCCACATAAAATCCCCAGTCTCTGCCGCTTTGGCTAG
JMSF039H17+ AGGGTTTTAGGATTAGGCTCCACATAAAATCCCCAGTCTCTGCCGCTTTGGCTAG
JMFF051M03+ ATAAAATCCCCAGTCTCTGCCGCTTTGGCTAG
JMFF035I16+ GACTAGGGTTTTAGGATTAGGCTCCACATAAAATCCCCAGTCTCTGCCGCTTTGGCTAG
JMFF047P11+ GACTAGGGTTTTAGGATTAGGCTCCACATAAAATCCCCAGTCTCTGCCGCTTTGGCTAG
JMSF046C11+ AG
____________________________________________________________
consensus GGACTAGGGTTTTAGGATTAGGCTCCACATAAAATCCCCAGTCTCTGCCGCTTTGGCTAG

. : . : . : . : . : . :
JMSF027C19+ GGTTTCCAGTGTTCCTCTCTGCCATTTCTCGTTTTTATTCCCCATGGATTCTTGTAACTA
JMFF003B02+ GGTTTCCAGTGTTCCTCTCTGCCATTTCTCGTTTTTATTCCCCATGGATTCTTGTAACTA
JMFF001I19+ GGTTTCCAGTGTTCCTCTCTGCCATTTCTCGTTTTTATTCCCCATGGATTCTTGTAACTA
JMFF047D08+ GGTTTCCAGTGTTCCTCTCTGCCATTTCTCGTTTTTATTCCCCATGGATTCTTGTAACTA
JMFF025E03+ GGTTTCCAGTGTTCCTCTCTGCCATTTCTCGTTTTTATTCCCCATGGATTCTTGTAACTA
JMSF039H17+ GGTTTCCAGTGTTCCTCTCTGCCATTTCTCGTTTTTATTCCCCATGGATTCTTGTAACTA
JMFF051M03+ GGTTTCCAGTGTTCCTCTCTGCCATTTCTCGTTTTTATTCCCCATGGATTCTTGTAACTA
JMFF035I16+ GGTTTCCAGTGTTCCTCTCTGCCATTTCTCGTTTTTATTCCCCATGGATTCTTGTAACTA
JMFF047P11+ GGTTTCCAGTGTTCCTCTCTGCCATTTCTCGTTTTTATTCCCCATGGATTCTTGTAACTA
JMSF046C11+ GGTTTCCAGTGTTCCTCTCTGCCATTTCTCGTTTTTATTCCCCATGGATTCTTGTAACTA
JMFS168E01+ CCATTTCTCGTTTTTATTCCCCATGGATTCTTGTAACTA
____________________________________________________________
consensus GGTTTCCAGTGTTCCTCTCTGCCATTTCTCGTTTTTATTCCCCATGGATTCTTGTAACTA

. : . : . : . : . : . :
JMSF027C19+ GCCTTTCCTTGATTCTCGAGAATCTCCGGTAAAGCTTCGAGCGGTGATACATATTTCAGT
JMFF003B02+ GCCTTTCCTTGATTCTCGAGAATCTCCGGTAAAGCTTCGAGCGGTGATACATATTTCAGT
JMFF001I19+ GCCTTTCCTTGATTCTCGAGAATCTCCGGTAAAGCTTCGAGCGGTGATACATATTTCAGT
JMFF047D08+ GCCTTTCCTTGATTCTCGAGAATCTCCGGTAAAGCTTCGAGCGGTGATACATATTTCAGT
JMFF025E03+ GCCTTTCCTTGATTCTCGAGAATCTCCGGTAAAGCTTCGAGCGGTGATACATATTTCAGT
JMSF039H17+ GCCTTTCCTTGATTCTCGAGAATCTCCGGTAAAGCTTCGAGCGGTGATACATATTTCAGT
JMFF051M03+ GCCTTTCCTTGATTCTCGAGAATCTCCGGTAAAGCTTCGAGCGGTGATACATATTTCAGT
JMFF035I16+ GCCTTTCCTTGATTCTCGAGAATCTCCGGTAAAGCTTCGAGCGGTGATACATATTTCAGT
JMFF047P11+ GCCTTTCCTTGATTCTCGAGAATCTCCGGTAAAGCTTCGAGCGGTGATACATATTTCAGT
JMSF046C11+ GCCTTTCCTTGATTCTCGAGAATCTCCGGTAAAGCTTCGAGCGGTGATACATATTTCAGT
JMFS168E01+ GCCTTTCCTTGATTCTCGAGAATCTCCGGTAAAGCTTCGAGCGGTGATACATATTTCAGT
JMSF047H17+ AATCTCCGGTAAAGCTTCGAGCGGTGATACATATTTCAGT
____________________________________________________________
consensus GCCTTTCCTTGATTCTCGAGAATCTCCGGTAAAGCTTCGAGCGGTGATACATATTTCAGT

. : . : . : . : . : . :
JMSF027C19+ TCTGAAAAGGATTCAGAAATGGCGACGATGAACCCTTTTGACCTTCTGGGTGACGATGAC
JMFF003B02+ TCTGAAAAGGATTCAGAAATGGCGACGATGAACCCTTTTGACCTTCTGGGTGACGATGAC
JMFF001I19+ TCTGAAAAGGATTCAGAAATGGCGACGATGAACCCTTTTGACCTTCTGGGTGACGATGAC
JMFF047D08+ TCTGAAAAGGATTCAGAAATGGCGACGATGAACCCTTTTGACCTTCTGGGTGACGATGAC
JMFF025E03+ TCTGAAAAGGATTCAGAAATGGCGACGATGAACCCTTTTGACCTTCTGGGTGACGATGAC
JMSF039H17+ TCTGAAAAGGATTCAGAAATGGCGACGATGAACCCTTTTGACCTTCTGGGTGACGATGAC
JMFF051M03+ TCTGAAAAGGATTCAGAAATGGCGACGATGAACCCTTTTGACCTTCTGGGTGACGATGAC
JMFF035I16+ TCTGAAAAGGATTCAGAAATGGCGACGATGAACCCTTTTGACCTTCTGGGTGACGATGAC
JMFF047P11+ TCTGAAAAGGATTCAGAAATGGCGACGATGAACCCTTTTGACCTTCTGGGTGACGATGAC
JMSF046C11+ TCTGAAAAGGATTCAGAAATGGCGACGATGAACCCTTTTGACCTTCTGGGTGACGATGAC
JMFS168E01+ TCTGAAAAGGATTCAGAAATGGCGACGATGAACCCTTTTGACCTTCTGGGTGACGATGAC
JMSF047H17+ TCTGAAAAGGATTCAGAAATGGCGACGATGAACCCTTTTGACCTTCTGGGTGACGATGAC
____________________________________________________________
consensus TCTGAAAAGGATTCAGAAATGGCGACGATGAACCCTTTTGACCTTCTGGGTGACGATGAC

. : . : . : . : . : . :
JMSF027C19+ AACGAGGATCCATTGCAGCTCCTTGCTGCTCAGCAGCAGAAGCTGCCTACTCCAGCCTCT
JMFF003B02+ AACGAGGATCCATTGCAGCTCCTTGCTGCTCAGCAGCAGAAGCTGCCTACTCCAGCCTCG
JMFF001I19+ AACGAGGATCCATTGCAGCTCCTTGCTGCTCAGCAGCAGAAGCTGCCTACTCCAGCCTCG
JMFF047D08+ AACGAGGATCCATTGCAGCTCCTTGCTGCTCAGCAGCAGAAGCTGCCTACTCCAGCCTCG
JMFF025E03+ AACGAGGATCCATTGCAGCTCCTTGCTGCTCAGCAGCAGAAGCTGCCTACTCCAGCCTCG
JMSF039H17+ AACGAGGATCCATTGCAGCTCCTTGCTGCTCAGCAGCAGAAGCTGCCTACTCCAGCCTCG
JMFF051M03+ AACGAGGATCCATTGCAGCTCCTTGCTGCTCAGCAGCAGAAGCTGCCTACTCCAGCCTCG
JMFF035I16+ AACGAGGATCCATTGCAGCTCCTTGCTGCTCAGCAGCAGAAGCTGCCTACTCCAGCCTCG
JMFF047P11+ AACGAGGATCCATTGCAGCTCCTTGCTGCTCAGCAGCAGAAGCTGCCTACTCCAGCCTCG
JMSF046C11+ AACGAGGATCCATTGCAGCTCCTTGCTGCTCAGCAGCAGAAGCTGCCTACTCCAGCCTCG
JMFS168E01+ AACGAGGATCCATTGCAGCTCCTTGCTGCTCAGCAGCAGAAGCTGCCTACTCCAGCCTCG
JMSF047H17+ AACGAGGATCCATTGCAGCTCCTTGCTGCTCAGCAGCAGAAGCTGCCTACTCCAGCCTCG
____________________________________________________________
consensus AACGAGGATCCATTGCAGCTCCTTGCTGCTCAGCAGCAGAAGCTGCCTACTCCAGCCTCG

. : . : . : . : . : . :
JMSF027C19+ GCTCCCAAGAAGACTCCTGGTCAGGCTCCGGCGAAGCCTAACGCCGCCGCCGCCGCCGCC
JMFF003B02+ GCTCCCAAGAAGACTCCTGGTCAGGCTCCGGCGAAGCCTAACGCCGCCGCCGCCGCCGCC
JMFF001I19+ GCTCCCAAGAAGACTCCTGGTCAGGCTCCGGCGAAGCCTAACGCCGCCGCCGCCGCCGCC
JMFF047D08+ GCTCCCAAGAAGACTCCTGGTCAGGCTCCGGCGAAGCCTAACGCCGCCGCCGCCGCCGCC
JMFF025E03+ GCTCCCAAGAAGACTCCTGGTCAGGCTCCGGCGAAGCCTAACGCCGCCGCCGCCGCCGCC
JMSF039H17+ GCTCCCAAGAAGACTCCTGGTCAGGCTCCGGCGAAGCCTAACGCCGCCGCCGCCGCCGCC
JMFF051M03+ GCTCCCAAGAAGACTCCTGGTCAGGCTCCGGCGAAGCCTAACGCCGCCGCCGCCGCCGCC
JMFF035I16+ GCTCCCAAGAAGACTCCTGGTCAGGCTCCGGCGAAGCCTAACGCCGCCGCCGCCGCCGCC
JMFF047P11+ GCTCCCAAGAAGACTCCTGGTCAGGCTCCGGCGAAGCCTAACGCCGCCGCCGCCGCCGCC
JMSF046C11+ GCTCCCAAGAAGACTCCTGGTCAGGCTCCGGCGAAGCCTAACGCCGCCGCCGCCGCCGCC
JMFS168E01+ GCTCCCAAGAAGACTCCTGGTCAGGCTCCGGCGAAGCCTAACGCCGCCGCCGCCGCCGCC
JMSF047H17+ GCTCCCAAGAAGACTCCTGGTCAGGCTCCGGCGAAGCCTAACGCCGCCGCCGCCGCCGCC
____________________________________________________________
consensus GCTCCCAAGAAGACTCCTGGTCAGGCTCCGGCGAAGCCTAACGCCGCCGCCGCCGCCGCC

. : . : . : . : . : . :
JMSF027C19+ ACTGCCAAGTTGCCTTCCAAGCCTCTTCCTCCTTCCCAAGCTGTGAGGGAAGCCAAAACT
JMFF003B02+ ACTGCCAAGTTGCCTTCCAAGCCTCTTCCTCCTTCCCAAGCTGTGAGGGAAGCCAAAACT
JMFF001I19+ ACTGCCAAGTTGCCTTCCAAGCCTCTTCCTCCTTCCCAAGCTGTGAGGGAAGCCAAAACT
JMFF047D08+ ACTGCCAAGTTGCCTTCCAAGCCTCTTCCTCCTTCCCAAGCTGTGAGGGAAGCCAAAACT
JMFF025E03+ ACTGCCAAGTTGCCTTCCAAGCCTCTTCCTCCTTCCCAAGCTGTGAGGGAAGCCAAAACT
JMSF039H17+ ACTGCCAAGTTGCCTTCCAAGCCTCTTCCTCCTTCCCAAGCTGTGAGGGAAGCCAAAACT
JMFF051M03+ ACTGCCAAGTTGCCTTCCAAGCCTCTTCCTCCTTCCCAAGCTGTGAGGGAAGCCAAAACT
JMFF035I16+ ACTGCCAAGTTGCCTTCCAAGCCTCTTCCTCCTTCCCAAGCTGTGAGGGAAGCCAAAACT
JMFF047P11+ ACTGCCAAGTTGCCTTCCAAGCCTCTTCCTCCTTCCCAAGCTGTGAGGGAAGCCAAAACT
JMSF046C11+ ACTGCCAAGTTGCCTTCCAAGCCTCTTCCTCCTTCCCAAGCTGTGAGGGAAGCCAAAACT
JMFS168E01+ ACTGCCAAGTTGCCTTCCAAGCCTCTTCCTCCTTCCCAAGCTGTGAGGGAAGCCAAAACT
JMSF047H17+ ACTGCCAAGTTGCCTTCCAAGCCTCTTCCTCCTTCCCAAGCTGTGAGGGAAGCCAAAACT
____________________________________________________________
consensus ACTGCCAAGTTGCCTTCCAAGCCTCTTCCTCCTTCCCAAGCTGTGAGGGAAGCCAAAACT

. : . : . : . : . : . :
JMSF027C19+ GAACCTCAGCGGGGAGCTGGACGTGGTCAACGTGGAGGTGGACGTGGTGGTCGGGGACGT
JMFF003B02+ GAACCTCAGCGGGGAGCTGGACGTGGTCAACGTGGAGGTGGACGTGGTGGTCGGGGACGT
JMFF001I19+ GAACCTCAGCGGGGAGCTGGACGTGGTCAACGTGGAGGTGGACGTGGTGGTCGGGGACGT
JMFF047D08+ GAACCTCAGCGGGGAGCTGGACGTGGTCAACGTGGAGGTGGACGTGGTGGTCGGGGACGT
JMFF025E03+ GAACCTCAGCGGGGAGCTGGACGTGGTCAACGTGGAGGTGGACGTGGTGGTCGGGGACGT
JMSF039H17+ GAACCTCAGCGGGGAGCTGGACGTGGTCAACGTGGAGGTGGACGTGGTGGTCGGGGACGT
JMFF051M03+ GAACCTCAGCGGGGAGCTGGACGTGGTCAACGTGGAGGTGGACGTGGTGGTCGGGGACGT
JMFF035I16+ GAACCTCAGCGGGGAGCTGGACGTGGTCAACGTGGAGGTGGACGTGGTGGTCGGGGACGT
JMFF047P11+ GAACCTCAGCGGGGAGCTGGACGTGGTCAACGTGGAGGTGGACGTGGTGGTCGGGGACGT
JMSF046C11+ GAACCTCAGCGGGGAGCTGGACGTGGTCAACGTGGAGGTGGACGTGGTGGTCGGGGACGT
JMFS168E01+ GAACCTCAGCGGGGAGCTGGACGTGGTCAACGTGGAGGTGGACGTGGTGGTCGGGGACGT
JMSF047H17+ GAACCTCAGCGGGGAGCTGGACGTGGTCAACGTGGAGGTGGACGTGGTGGTCGGGGACGT
____________________________________________________________
consensus GAACCTCAGCGGGGAGCTGGACGTGGTCAACGTGGAGGTGGACGTGGTGGTCGGGGACGT

. : . : . : . : . : . :
JMSF027C19+ GGGTTCAATCAAGATTCTACTAACAATGAGAATAATTATGGCAACAACAATGGTTTTGCT
JMFF003B02+ GGGTTCAATCAAGATTCTACT
JMFF001I19+ GGGTTCAATCAAGATTCTACTAACAATGAGAATAATTATGGCAACAACAATGGTTTTGCT
JMFF047D08+ GGGTTCAATCAAGATTCTACTAACAATGAGAATAATTATGGCAACAACAATGGTTTTGCT
JMFF025E03+ GGGTTCAATCAAGATTCTACTAACAATGAGAATAATTATGGCAACA
JMSF039H17+ GGGTTCAATCAAGATTCTACTAACAATGAGAATAATTATGGCAACAACAATGGTTTTGCT
JMFF051M03+ GGGTTCAATCAAGATTCTACTAACAATGAGAATAATTATGGCAACAACAATGGTTTTGCT
JMFF035I16+ GGGTTCAATCAAGATTCTACTAACAATGAGAATAATTATGGCAACAACAATGGTTTTGCT
JMFF047P11+ GGGTTCAATCAAGATTCTACTAACAATGAGAATAATTATGGCAACAACAATGGTTTTGCT
JMSF046C11+ GGGTTCAATCAAGATTCTACTAACAATGAGAATAATTATGGCAACAACAATGGTTTTGCT
JMFS168E01+ GGGTTCAATCAAGATTCTACTAACAATGAGAATAATTATGGCAACAACAATGGTTTTGCT
JMSF047H17+ GGGTTCAATCAAGATTCTACTAACAATGAGAATAATTATGGCAACAACAATGGTTTTGCT
____________________________________________________________
consensus GGGTTCAATCAAGATTCTACTAACAATGAGAATAATTATGGCAACAACAATGGTTTTGCT

. : . : . : . : . : . :
JMSF027C19+ GGTGGTTATAGACCATCAGAAGATGGAGAAGGTGGAAAGCCATTTGAAAGGAGAGGAGGC
JMFF001I19+ GGTGGTTATAGACCATCAGAA
JMFF047D08+ GGTGGTTATAGACCATCAGAAGATGGAGAAGGTGGAAAGCCATTTGAAAGG
JMSF039H17+ GGTGGTTATAGACCATCAGAA
JMFF051M03+ GGTGGTTATAGACCATCAGAAGATGGAGAAGGTGGAAAGCCATTTG
JMFF035I16+ GGTGGTTATAGACCATCAGA
JMFF047P11+ GGTGGTTATAGACCATCAGAAGATGGAGAAGGTGGAAAGCCATTTGAAAGG
JMSF046C11+ GGTGGTTATAGACCATCAGAAGATGGAGAAGGTGGAAAGCCATTTGAAAGGAGAGGAGGC
JMFS168E01+ GGTGGTTATAGACCATCAGAAGATGGAGAAGGTGGAAAGCCATTTGAAAGGAGAGGAGGC
JMSF047H17+ GGTGGTTATAGACCATCAGAAGATGGAGAAGGTGGAAAGCCATTTGAAAGGAGAGGAGGC
____________________________________________________________
consensus GGTGGTTATAGACCATCAGAAGATGGAGAAGGTGGAAAGCCATTTGAAAGGAGAGGAGGC

. : . : . : . : . : . :
JMSF027C19+ TATGGTGGAGGTTATAGACAATCCGAAGATGGAGAAGGTGGAAAGCCATTTGAAAGGAGA
JMSF046C11+ TATGGTGGAGGTTATAGACAATCCGAAGATGGAGAAGGTGGAAAGCCATTTGAAAGGAGA
JMFS168E01+ TATGGTGGAGGTTATAGACAATCCGAAGATGGAGAAGGTGGAAAGCCATTTGAAAGGA
JMSF047H17+ TATGGTGGAGGTTATAGACAATCCGAAGATGGAGAAGGTGGAAAGCCATTTGAAAGGAGA
____________________________________________________________
consensus TATGGTGGAGGTTATAGACAATCCGAAGATGGAGAAGGTGGAAAGCCATTTGAAAGGAGA

. : . : . : . : . : . :
JMSF027C19+ GGAGGCTATGGTGGANGTTATAGACAATCTGAAGATG
JMSF046C11+ GGAGGCTATGGTGGAGGTTATAGACAATCTGAAGATGGAGAAGGTGGAAAGCCATTTGAA
JMSF047H17+ GGAGGCTATGGTGGAGGTTATAGACAATCTGAAGATGGAGAANGTGGAAAGCCATTTGAA
____________________________________________________________
consensus GGAGGCTATGGTGGAGGTTATAGACAATCTGAAGATGGAGAAGGTGGAAAGCCATTTGAA

. : . : . : . : . : . :
JMSF046C11+ AGGAGAGGAGGCTATGGTGGAGGTTATAGACAATCTGAAGATGGAGAANGTGGAAAGACC
JMSF047H17+ AGGAGAGGAGGCTATGGTGGAGGTTATAGACAATCTGAAGATGGAGAANGTGGAAAGACC
____________________________________________________________
consensus AGGAGAGGAGGCTATGGTGGAGGTTATAGACAATCTGAAGATGGAGAANGTGGAAAGACC

. : . : . : . : . : . :
JMSF046C11+ TTTGAAAGGAGAGGAGGCTATGGTGGA
JMSF047H17+ TTTGAAAGGAGANGANGCTATGGTGGATCTAGGGGTGGCTTCCGTGGCGATCGCCGTGGT
____________________________________________________________
consensus TTTGAAAGGAGAGGAGGCTATGGTGGATCTAGGGGTGGCTTCCGTGGCGATCGCCGTGGT

. : . : . : . : . : . :
JMSF047H17+ GG
____________________________________________________________
consensus GG