Alignment Contig 5105

                          .    :    .    :    .    :    .    :    .    :    .    :

JMSF025D18+ GGAGCAGCAACTGCAGCTGTGTGATTTCGAGCACAAAAAATACACAGCAAAAGCTGAGCA
JMFF031F05+ AGCAGCAACTGCAGCTGTGTGATTTCGAGCACAAAAAATACACAGCAAAAGCTGAGCA
____________________________________________________________
consensus GGAGCAGCAACTGCAGCTGTGTGATTTCGAGCACAAAAAATACACAGCAAAAGCTGAGCA

. : . : . : . : . : . :
JMSF025D18+ GCCAAATTTGCTGCGATTACTCTTCGGTAGCAAACACCAAGAAGAAGGCAGCAATCATGG
JMFF036P22+ AAATTTGCTGCGATTACTCTTCGGTAGCAAACACCAAGAAGAAGGCAGCAATCATGG
JMSF010N24+ AAATTTGCTGCGATTACTCTTCGGTAGCAAACACCAAGAAGAAGGCAGCAATCATGG
JMFF031F05+ GCCAAATTTGCTGCGATTACTCTTCGGTAGCAAACACCAAGAAGAAGGCAGCAATCATGG
____________________________________________________________
consensus GCCAAATTTGCTGCGATTACTCTTCGGTAGCAAACACCAAGAAGAAGGCAGCAATCATGG

. : . : . : . : . : . :
JMSF025D18+ AGGATGCATCAAACCCTTTCCAATTTCTGACCAAGAAGCCTTATCAGCCTCCTACTTGGG
JMFF036P22+ AGGATGCATCAAACCCTTTCCAATTTCTGACCAAGAAGCCTTATCAGCCTCCTACTTGGG
JMSF010N24+ AGGATGCATCAAACCCTTTCCAATTTCTGACCAAGAAGCCTTATCAGCCTCCTACTTGGG
JMFF031F05+ AGGATGCATCAAACCCTTTCCAATTTCTGACCAAGAAGCCTTATCAGCCTCCTACTTGGG
____________________________________________________________
consensus AGGATGCATCAAACCCTTTCCAATTTCTGACCAAGAAGCCTTATCAGCCTCCTACTTGGG

. : . : . : . : . : . :
JMSF025D18+ CTTCTTCTCTCAGCCCCGTCCCCTCTGACGTCTTTTCCCTCGGAAACTTTCCTACTCCAA
JMFF036P22+ CTTCTTCTCTCAGCCCCGTCCCCTCTGACGTCTTTTCCCTCGGAAACTTTCCTACTCCAA
JMSF010N24+ CTTCTTCTCTCAGCCCCGTCCCCTCTGACGTCTTTTCCCTCGGAAACTTTCCTACTCCAA
JMFF031F05+ CTTCTTCTCTCAGCCCCGTCCCCTCTGACGTCTTTTCCCTCGGAAACTTTCCTACTCCAA
____________________________________________________________
consensus CTTCTTCTCTCAGCCCCGTCCCCTCTGACGTCTTTTCCCTCGGAAACTTTCCTACTCCAA

. : . : . : . : . : . :
JMSF025D18+ TTCACATATGGAACTTGCCCAATCTGCCTACAAACACCGAGGTCTGGTTGAAGCGTGATG
JMFF036P22+ TTCACATATGGAACTTGCCCAATCTGCCTACAAACACCGAGGTCTGGTTGAAGCGTGATG
JMSF010N24+ TTCACATATGGAACTTGCCCAATCTGCCTACAAACACCGAGGTCTGGTTGAAGCGTGATG
JMFF031F05+ TTCACATATGGAACTTGCCCAATCTGCCTACAAACACCGAGGTCTGGTTGAAGCGTGATG
____________________________________________________________
consensus TTCACATATGGAACTTGCCCAATCTGCCTACAAACACCGAGGTCTGGTTGAAGCGTGATG

. : . : . : . : . : . :
JMSF025D18+ ATCTTTCAGGAATGCAGTTGAGTGGTAACAAGGTGAGGAAACTGGAATTCTTGATGGCAG
JMFF036P22+ ATCTTTCAGGAATGCAGTTGAGTGGTAACAAGGTGAGGAAACTGGAATTCTTGATGGCAG
JMSF010N24+ ATCTTTCAGGAATGCAGTTGAGTGGTAACAAGGTGAGGAAACTGGAATTCTTGATGGCAG
JMFF031F05+ ATCTTTCAGGAATGCAGTTGAGTGGTAACAAGGTGAGGAAACTGGAATTCTTGATGGCAG
____________________________________________________________
consensus ATCTTTCAGGAATGCAGTTGAGTGGTAACAAGGTGAGGAAACTGGAATTCTTGATGGCAG

. : . : . : . : . : . :
JMSF025D18+ ATGCTGTGGCACAGGGAGCAGACTGCATTATCACTTTAGGCGGCATTCAAAGTAATCATT
JMFF036P22+ ATGCTGTGGCACAGGGAGCAGACTGCATTATCACTTTAGGCGGCATTCAAAGTAATCATT
JMSF010N24+ ATGCTGTGGCACAGG
JMFF031F05+ ATGCTGTGGCACAGGGAGCAGACTGCATTATCACTTTAGGCGGCATTCAAAGTAATCATT
____________________________________________________________
consensus ATGCTGTGGCACAGGGAGCAGACTGCATTATCACTTTAGGCGGCATTCAAAGTAATCATT

. : . : . : . : . : . :
JMSF025D18+ GCCGTGCTACTGCTGTTGCTGCCAAGTATTTGAACCTTGACTGTTATCTTATACTGCGAA
JMFF036P22+ GCCGTGCTACTGCTGTTGCTGCCAAGTATTTGAACCTTGACTGTTATCTTATACTGCGAA
JMFF031F05+ GCCGTGCTACTGCTGTTGCTGCCAAGTATTTGAACCTTGACTGTTATCTTATACTGCGAA
____________________________________________________________
consensus GCCGTGCTACTGCTGTTGCTGCCAAGTATTTGAACCTTGACTGTTATCTTATACTGCGAA

. : . : . : . : . : . :
JMSF025D18+ CTTCCAAGGTCCTTGTGGATAAAGATCCAGGATTGACAGGGAATCTCCTTGTTGAGCGCT
JMFF036P22+ CTTCCAAGGTCCTTGTGGATAAAGATCCAGGATTGACAGGGAATCTCCTTGTTGAGCGCT
JMFF031F05+ CTTCCAAGGTCCTTGTGGATAAAGATCCAGGATTGACAGGGAATCTCCTTGTTGAGCGCT
____________________________________________________________
consensus CTTCCAAGGTCCTTGTGGATAAAGATCCAGGATTGACAGGGAATCTCCTTGTTGAGCGCT

. : . : . : . : . : . :
JMSF025D18+ TAGTTGGAGCTCACATTGATCTTGTTTCAAAAGAAGAATATGCAAAAGTTGGCAGTGTGG
JMFF036P22+ TAGTTGGAGCTCACATTGATCTTGTTTCAAAAGAAGAATATGCAAAAGTTGGCAGTGTGG
JMFF031F05+ TAGTTGGAGCTCACATTGATCTTGTTT
____________________________________________________________
consensus TAGTTGGAGCTCACATTGATCTTGTTTCAAAAGAAGAATATGCAAAAGTTGGCAGTGTGG

. : . : . : . : . : . :
JMSF025D18+ CTCTTGCTAACATATTGAAAGAAAAATTGTTGCACGAAGGGAGAAAGCCCTATGTCATAC
JMFF036P22+ CTCTTGCTAACATATTGAAA
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consensus CTCTTGCTAACATATTGAAAGAAAAATTGTTGCACGAAGGGAGAAAGCCCTATGTCATAC

. : . : . : . : . : . :
JMSF025D18+ CTGTTGGANGA
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consensus CTGTTGGANGA