Alignment Contig 5063

                          .    :    .    :    .    :    .    :    .    :    .    :

JMSF020H12+ GGTCCGTTCTTTAACTAAATCCAACCAACACCCAAACGGATTGTTTTTCCCTCCGGCGCC
JMSF009B20+ GGTCCGTTCTTTAACTAAATCCAACCAACACCCAAACGGATTGTTTTTCCCTCCGGCGCC
JMSF017P14+ GGTCCGTTCTTTAACTAAATCCAACCAACACCCAAACGGATTGTTTTTCCCTCCGGCGCC
JMSF038N17+ ACTAAATCCAACCAACACCCAAACGGATTGTTTTTCCCTCCGGCGCC
____________________________________________________________
consensus GGTCCGTTCTTTAACTAAATCCAACCAACACCCAAACGGATTGTTTTTCCCTCCGGCGCC

. : . : . : . : . : . :
JMSF020H12+ AGGAGGCCTTTTCATATCCATGGCCGCCATTCATACCTCCTTCTCCTCCCTTCACTCCCA
JMSF009B20+ AGGAGGCCTTTTCATATCCATGGCCGCCATTCATACCTCCTTCTCCTCCCTTCACTCCCA
JMSF017P14+ AGGAGGCCTTTTCATATCCATGGCCGCCATTCATACCTCCTTCTCCTCCCTTCACTCCCA
JMSF038N17+ AGGAGGCCTTTTCATATCCATGGCCGCCATTCATACCTCCTTCTCCTCCCTTCACTCCCA
____________________________________________________________
consensus AGGAGGCCTTTTCATATCCATGGCCGCCATTCATACCTCCTTCTCCTCCCTTCACTCCCA

. : . : . : . : . : . :
JMSF020H12+ GTGCCACTCTCTCTGTACCATTGCTTCCCAGTTTCCCCCTCACCAATTCTCTCTCAAGCG
JMSF009B20+ GTGCCACTCTCTCTGTACCATTGCTTCCCAGTTTCCCCCTCACCAATTCTCTCTCAAGCG
JMSF017P14+ GTGCCACTCTCTCTGTACCATTGCTTCCCAGTTTCCCCCTCACCAATTCTCTCTCAAGCG
JMSF038N17+ GTGCCACTCTCTCTGTACCATTGCTTCCCAGTTTCCCCCTCACCAATTCTCTCTCAAGCG
____________________________________________________________
consensus GTGCCACTCTCTCTGTACCATTGCTTCCCAGTTTCCCCCTCACCAATTCTCTCTCAAGCG

. : . : . : . : . : . :
JMSF020H12+ AACCTCTCGAAACTACCAAAGTTTGAAACTTTCCCGGTTCCTTTGCCGATCAAGTAGCGA
JMSF009B20+ AACCTCTCGAAACTACCAAAGTTTGAAACTTTCCCGGTTCCTTTGCCGATCAAGTAGCGA
JMSF017P14+ AACCTCTCGAAACTACCAAAGTTTGAAACTTTCCCGGTTCCTTTGCCGATCAAGTAGCGA
JMSF038N17+ AACCTCTCGAAACTACCAAAGTTTGAAACTTTCCCGGTTCCTTTGCCGATCAAGTAGCGA
____________________________________________________________
consensus AACCTCTCGAAACTACCAAAGTTTGAAACTTTCCCGGTTCCTTTGCCGATCAAGTAGCGA

. : . : . : . : . : . :
JMSF020H12+ TGGCAACGAGGATTATTTTTTGGATGCTCCCGTTTCTGTTGGTGATGGGTTTTCTTTCAG
JMSF009B20+ TGGCAACGAGGATTATTTTTTGGATGC
JMSF017P14+ TGGCAACGAGGATTATTTTTTGGATGCTCCCGTTTCTGTTGGTGATGGGTTTTCTTTCAG
JMSF038N17+ TGGCAACGAGGATTATTTTTTGGATGCTCCCGTTTCTGTTGGTGATGGGTTTTCTTTCAG
____________________________________________________________
consensus TGGCAACGAGGATTATTTTTTGGATGCTCCCGTTTCTGTTGGTGATGGGTTTTCTTTCAG

. : . : . : . : . : . :
JMSF020H12+ TGGAGGAAAGTATTCAGACGAGCCCAGTCCCGCAGATGAATGGTTCAAGCAGGGGAGAAT
JMSF017P14+ TGGAGG
JMSF038N17+ TGGAGGAAAGTATTCAGACGAGCCCAGTCCCGCAGATGAATGGTTCAAGCAGGGGAGAAT
____________________________________________________________
consensus TGGAGGAAAGTATTCAGACGAGCCCAGTCCCGCAGATGAATGGTTCAAGCAGGGGAGAAT

. : . : . : . : . : . :
JMSF020H12+ TGTAAAAGCTCATCTAGTCAATGGAAGTGGTGAGAAGGCAAAAGACCCGATTTTTGGTCT
JMSF038N17+ TGTAAAAGCTCATCTAGTCAATGGAAGTGGTGAGAAGGCAAAAGACCCGATTTTTGGTCT
____________________________________________________________
consensus TGTAAAAGCTCATCTAGTCAATGGAAGTGGTGAGAAGGCAAAAGACCCGATTTTTGGTCT

. : . : . : . : . : . :
JMSF020H12+ TACAATGGGAGCTGGTTCACAGTCATCATCTGATCTTTTCAGATGGTTTTGCGTTGAAAC
JMSF038N17+ TACAATGGGAGCTGGTTCACAGTCATCATCTGATCTTTTCAG
____________________________________________________________
consensus TACAATGGGAGCTGGTTCACAGTCATCATCTGATCTTTTCAGATGGTTTTGCGTTGAAAC

. : . : . : . : . : . :
JMSF020H12+ TGGAACTGCTTACGATTCTTGCATTGTATTAATCCATGGGTTTCCCTCGCAGGCATATTC
____________________________________________________________
consensus TGGAACTGCTTACGATTCTTGCATTGTATTAATCCATGGGTTTCCCTCGCAGGCATATTC

. : . : . : . : . : . :
JMSF020H12+ TTATCGCAAAGTTCTCCCCATACTTTCAAAGAGCCACCATGTCATTGCATTTGATTGGCT
____________________________________________________________
consensus TTATCGCAAAGTTCTCCCCATACTTTCAAAGAGCCACCATGTCATTGCATTTGATTGGCT

. : . : . : . : . : . :
JMSF020H12+ AGGATTTGGATTTTCAGATAAGCCCCAGCCAAAATATGGATTTGACTACACATTGGATGA
____________________________________________________________
consensus AGGATTTGGATTTTCAGATAAGCCCCAGCCAAAATATGGATTTGACTACACATTGGATGA

. : . : . : . : . : . :
JMSF020H12+ ATATGTATCATCCTTGGAATCTGTAATTAACACACTGACTAA
____________________________________________________________
consensus ATATGTATCATCCTTGGAATCTGTAATTAACACACTGACTAA