Alignment Contig 5053

                          .    :    .    :    .    :    .    :    .    :    .    :

JMSF019G23+ GAGTTGCCACTACCTTGCTATTTGCATAGCTAAACACAACTTTTTCCCTTCTCCAATGCT
JMFF026A20+ GCT
JMFF028P22+ GCT
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consensus GAGTTGCCACTACCTTGCTATTTGCATAGCTAAACACAACTTTTTCCCTTCTCCAATGCT

. : . : . : . : . : . :
JMSF019G23+ AATTTTCTTCTTTCCACACTCCTCTCTCACTGTCAAAGCTAGCTTTCTACTCTCTGTCTG
JMFF026A20+ AATTTTCTTCTTTCCACACTCCTCTCTCACTGTCAAAGCTAGCTTTCTACTCTCTGTCTG
JMSF011A08+ GCTTTCTACTCTCTGTCTG
JMFF028P22+ AATTTTCTTCTTTCCACACTCCTCTCTCACTGTCAAAGCTAGCTTTCTACTCTCTGTCTG
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consensus AATTTTCTTCTTTCCACACTCCTCTCTCACTGTCAAAGCTAGCTTTCTACTCTCTGTCTG

. : . : . : . : . : . :
JMSF019G23+ TCTCTCTCTCTAGGACTCCATTGCTTCTGGTCCGAACCTTTCTCTTCTCTGCATCAACTT
JMFF026A20+ TCTCTCTCTCTAGGACTCCATTGCTTCTGGTCCGAACCTTTCTCTTCTCTGCATCAACTT
JMSF011A08+ TCTCTCTCTCTAGGACTCCATTGCTTCTGGTCCGAACCTTTCTCTTCTCTGCATCAACTT
JMFF028P22+ TCTCTCTCTCTAGGACTCCATTGCTTCTGGTCCGAACCTTTCTCTTCTCTGCATCAACTT
____________________________________________________________
consensus TCTCTCTCTCTAGGACTCCATTGCTTCTGGTCCGAACCTTTCTCTTCTCTGCATCAACTT

. : . : . : . : . : . :
JMSF019G23+ GGTTTTCATTTGTACAAAGGTAAGCTCATTGGCACTCTATCACCTTCCATATCCACCATA
JMFF026A20+ GGTTTTCATTTGTACAAAGGTAAGCTCATTGGCACTCTATCACCTTCCATATCCACCATA
JMSF011A08+ GGTTTTCATTTGTACAAAGGTAAGCTCATTGGCACTCTATCACCTTCCATATCCACCATA
JMFF028P22+ GGTTTTCATTTGTACAAAGGTAAGCTCATTGGCACTCTATCACCTTCCATATCCACCATA
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consensus GGTTTTCATTTGTACAAAGGTAAGCTCATTGGCACTCTATCACCTTCCATATCCACCATA

. : . : . : . : . : . :
JMSF019G23+ ATTTCTCC
JMFF026A20+ ATTTCTCCAAGAAAGAGTGGGGAAGATGGTAATATTAGCATTGTTCATATTGATCTTCTG
JMSF011A08+ ATTTCTCCAAGAAAGAGTGGGGAAGATGGTAATATTAGCATTGTTCATATTGATCTTCTG
JMFF028P22+ ATTTCTCCAAGAAAGAGTGGGGAAGATGGTAATATTAGCATTGTTCATATTGATCTTCTG
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consensus ATTTCTCCAAGAAAGAGTGGGGAAGATGGTAATATTAGCATTGTTCATATTGATCTTCTG

. : . : . : . : . : . :
JMFF026A20+ CAATTCACAAGCTGTGTTGAGTTCTTTGAATGAAGAAGGAAAATCCCTTTTGATCTTCAA
JMSF011A08+ CAATTCACAAGCTGTGTTGAGTTCTTTGAATGAAGA
JMFF028P22+ CAATTCACAAGCTGTGTTGAGTTCTTTGAATGAAGAAGGAAAATCCCTTTTGATCTTCAA
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consensus CAATTCACAAGCTGTGTTGAGTTCTTTGAATGAAGAAGGAAAATCCCTTTTGATCTTCAA

. : . : . : . : . : . :
JMFF026A20+ GAAATCTATAGTAGATGACCCANAAGGGTCAATGAGTGACTGGAACCGTTCCGATGAAAC
JMFF028P22+ GAAATCTATAGTAGATGACCCAGAAGGGTCAATGAGTGACTGGAACCGTTCCGATGAAAC
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consensus GAAATCTATAGTAGATGACCCAGAAGGGTCAATGAGTGACTGGAACCGTTCCGATGAAAC

. : . : . : . : . : . :
JMFF026A20+ CCCTTGTTCTTGGAATGGTATTACATGCAAAGACCAGAGGGTTGTCTCTCTCAGCATTCC
JMFF028P22+ CCCTTGTTCTTGGAATGGTATTACATGCAAAGACCAGAGGGTTGTCTCTCTCAGCATTCC
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consensus CCCTTGTTCTTGGAATGGTATTACATGCAAAGACCAGAGGGTTGTCTCTCTCAGCATTCC

. : . : . : . : . : . :
JMFF026A20+ CAAGAAGAAACTCTCTGGATTTCTCTCTTCTTCCCTTGGCTCACTCTCTCAGCTCAGGCA
JMFF028P22+ CAAGAAGAAACTCTCTGGATTTCTCTCTTCTTCCCTTGGCTCACTCTCTCAGCTCAGGCA
____________________________________________________________
consensus CAAGAAGAAACTCTCTGGATTTCTCTCTTCTTCCCTTGGCTCACTCTCTCAGCTCAGGCA

. : . : . : . : . : . :
JMFF026A20+ TGTGAACTTGAGGAGTAATAGGCTTAATGGGAGCTTGCCCCCTGGGCTCTTCAGAG
JMFF028P22+ TGTGAACTTGAGGAGTAATAGGCTTAATGGGAGCTTGCCCCCTGGGCTCTTCAGAGCTCT
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consensus TGTGAACTTGAGGAGTAATAGGCTTAATGGGAGCTTGCCCCCTGGGCTCTTCAGAGCTCT

. : . : . : . : . : . :
JMFF028P22+ AGGGTTGGAAAGTTTGGTTCTTTATGAGAATTATTTGTCTGGGCCTTTGCCTTTTGANG
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consensus AGGGTTGGAAAGTTTGGTTCTTTATGAGAATTATTTGTCTGGGCCTTTGCCTTTTGANG