Alignment Contig 5011

                          .    :    .    :    .    :    .    :    .    :    .    :

JMSF013B24+ GAGGCACGATAACCTCTCCTGCTTTCAATCTCTAGGATTCAAAACCCATTCGATTTTTTT
JMFS134C01+ TCCTGCTTTCAATCTCTAGGATTCAAAACCCATTCGATTTTTTT
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consensus GAGGCACGATAACCTCTCCTGCTTTCAATCTCTAGGATTCAAAACCCATTCGATTTTTTT

. : . : . : . : . : . :
JMSF013B24+ -CATTTTTTTTTCTGATTGTATCTGTTGGGAATTTCGTCGAACACTTTGATTGCAGAGAA
JMFS134C01+ TCATTTTTTTTTCTGATTGTATCTGTTGGGAATTTCGTCGAACACTTTGATTGCAGAGAA
JMSF053O15+ GGTGTAAACAAACAGGTCGGCTAGCATCCCCCACCCAGAGAA
JMSF012F04+ GGTGTAAACAAACAGGTCGGCTAGCATCCCCCACCCAGAGAA
JMFF011O05+ GGTGTAAACAAACAGGTCGGCTAGCATCCCCCACCCAGAGAA
JMFF029A01+ CAGAGAA
JMFF041E14+ GGTGTAAACAAACAGGTCGGCTAGCATCCCCCACCCAGAGAA
____________________________________________________________
consensus TCATTTTTTTTTCTGATTGGTGTAAACAAACAGGTCGGCTAGCATCCCCCACCCAGAGAA

. : . : . : . : . : . :
JMSF013B24+ TCCAAACCCGAATCCCGAAAATGTCATTGCGACCCGGTACCCGAACTGAGGTACGCAAGA
JMFS134C01+ TCCAAACCCGAATCCCGAAAATGTCATTGCGACCCGGTACCCGAACTGAGGTACGCAAGA
JMSF053O15+ TCCAAACCCGAATCCCGAAAATGTCATTGCGACCCGGTACCCGAACTGAGGTACGCAAGA
JMSF012F04+ TCCAAACCCGAATCCCGAAAATGTCATTGCGACCCGGTACCCGAACTGAGGTACGCAAGA
JMFF011O05+ TCCAAACCCGAATCCCGAAAATGTCATTGCGACCCGGTACCCGAACTGAGGTACGCAAGA
JMFF029A01+ TCCAAACCCGAATCCCGAAAATGTCATTGCGACCCGGTACCCGAACTGAGGTACGCAAGA
JMFF041E14+ TCCAAACCCGAATCCCGAAAATGTCATTGCGACCCGGTACCCGAACTGAGGTACGCAAGA
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consensus TCCAAACCCGAATCCCGAAAATGTCATTGCGACCCGGTACCCGAACTGAGGTACGCAAGA

. : . : . : . : . : . :
JMSF013B24+ AGTCGTACAAGATCGGAGTGGATGCCGA
JMFS134C01+ AGTCGTACAAGATCGGAGTGGATGCCGACGAGGCGCGGCGGCGGAGGGAGGACAACCTGG
JMSF053O15+ AGTCGTACAAGATCGGAGTGGATGCCGACGAGGCGCGGCGGCGGAGGGAGGACAACCTGG
JMSF012F04+ AGTCGTACAAGATCGGAGTGGATGCCGACGAGGCGCGGCGGCGGAGGGAGGACAACCTGG
JMFF011O05+ AGTCGTACAAGATCGGAGTGGATGCCGACGAGGCGCGGCGGCGGAGGGAGGACAACCTGG
JMFF029A01+ AGTCGTACAAGATCGGAGTGGATGCCGACGAGGCGCGGCGGCGGAGGGAGGACAACCTGG
JMFF041E14+ AGTCGTACAAGATCGGAGTGGATGCCGACGAGGCGCGGCGGCGGAGGGAGGACAACCTGG
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consensus AGTCGTACAAGATCGGAGTGGATGCCGACGAGGCGCGGCGGCGGAGGGAGGACAACCTGG

. : . : . : . : . : . :
JMFS134C01+ TGGAGATCAGGAAGATCAAGCGCGAGGATAACCTTCTTAAGAAGCGCCGCGAGGTTCTTC
JMSF053O15+ TGGAGATCAGGAAGAGCAAGCGCGAGGATAACCTTCTTAAGAAGCGCCGCGAGGTTCTTC
JMSF012F04+ TGGAGATCANGAAGAGCAAGCGCGAGGATAACCTTCTTAAGAAGCGCCGCGAGGTTCTTC
JMFF011O05+ TGGAGATCAGGAAGAGCAAGCGCGAGGATAACCTTCTTAAGAAGCGCCGCGAGGTTCTTC
JMFF029A01+ TGGAGATCAGGAAGAGCAAGCGCGAGGATAACCTTCTTAAGAAGCGCCGCGAGGTTCTTC
JMFF041E14+ TGGAGATCAGGAAGAGCAAGCGCGAGGATAACCTTCTTAAGAAGCGCCGCGAGGTTCTTC
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consensus TGGAGATCAGGAAGAGCAAGCGCGAGGATAACCTTCTTAAGAAGCGCCGCGAGGTTCTTC

. : . : . : . : . : . :
JMFS134C01+ AGTCCCAGCATGTTCTTGATGCTTCTCAATCCCCCGCCGCTCCTGACAAACGGCTAGAAT
JMSF053O15+ AGTCCCAGCATGTTCTTGATGCTTCTCAATCCCCCGCCGCTCCTGACAAACGGCTAGAAT
JMSF012F04+ AGTCCCAGCATGTTCTTGATGCTTCT
JMFF011O05+ AGTCCCAGCATGTTCTTGATGCTTCTCAATCCCCCGCCGCTCCTGACAAACGGCTAGAAT
JMFF029A01+ AGTCCCAGCATGTTCTTGATGCTTCTCAATCCCCCGCCGCTCCTGACAAACGGCTAGAAT
JMFF041E14+ AGTCCCAGCATGTTCTTGATGCTTCTCAATCCCCCGCCGCTCCTGACAAACGGCTAGAAT
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consensus AGTCCCAGCATGTTCTTGATGCTTCTCAATCCCCCGCCGCTCCTGACAAACGGCTAGAAT

. : . : . : . : . : . :
JMFS134C01+ GCATTCCATTGATGGTCCAAGGAGTATGGTCTGAGGATCCAGCTGTACAAATTGAAGCAA
JMSF053O15+ GCATTCCATTGATGGTCCAAGGAGTATGGTCTGAGGATCCAGCTGTACAAATTGAAGCAA
JMFF011O05+ GCATTCCATTGATGGTCCAAGGAGTATGGTCTGAGGATCCAGCTGTACAAATTGAAGCAA
JMFF029A01+ GCATTCCATTGATGGTCCAAGGAGTATGGTCTGAGGATCCAGCTGTACAAATTGAAGCAA
JMFF041E14+ GCATTCCATTGATGGTCCAAGGAGTATGGTCTGAGGATCCAGCTGTACAAATTGAAGCAA
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consensus GCATTCCATTGATGGTCCAAGGAGTATGGTCTGAGGATCCAGCTGTACAAATTGAAGCAA

. : . : . : . : . : . :
JMFS134C01+ CCACACAATTCAGAAAACTGTTATCCATTGAGCGCAGCCCTCCAATAGATGAAGTGATTA
JMSF053O15+ CCACACAATTCAGAAAACTGTTATCCATTGAGCGCAGCCCTCCAATAGATGAAGTGATTA
JMFF011O05+ CCACACAATTCAGAAAACTGTTATCCATTGAGCGCAGCCCTCCAATAGATGAAGTGATTA
JMFF029A01+ CCACACAATTCAGAAAACTGTTATCCATTGAGCGCAGCCCTCCAATAGATGAAGTGATTA
JMFF041E14+ CCACACAATTCAGAAAACTGTTATCCATTGAGCGCAGCCCTCCAATAGATGAAGTGATTA
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consensus CCACACAATTCAGAAAACTGTTATCCATTGAGCGCAGCCCTCCAATAGATGAAGTGATTA

. : . : . : . : . : . :
JMFS134C01+ AAGCTGGAGTTGTCCCACGCTTTGTACAGTTTCTTGAAAGAAATGACTTACCCCAATTGC
JMSF053O15+ AAGCTGGAGTTGTCCCACGCTTTGTACAGTTTCTTGAAAGAAATGACTTACCCCAATTGC
JMFF011O05+ AAGCTGGAGTTGTCCCACGCTTTGTACAGTTTCTTGAAAGAAATGACTTACCCCAATTGC
JMFF029A01+ AAGCTGGAGTTGTCCCACGCTTTGTACAGTTTCTTGANAGAAATGACTTACCCCAATTGC
JMFF041E14+ AAGCTGGAGTTGTCCCACGCTTTGTACAGTTTCTTGAAAGAAATGACTTACCCCAATTGC
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consensus AAGCTGGAGTTGTCCCACGCTTTGTACAGTTTCTTGAAAGAAATGACTTACCCCAATTGC

. : . : . : . : . : . :
JMFS134C01+ AATTTGAAGCTGCTTGGGCATTAACAAATGTAGCATCTGGTACATCAGAACATACACGGG
JMSF053O15+ AATTTGAAGCTGCTTGGGCATTAACAAATGTAGCATCTGGTACATCAGAACATACACGGG
JMFF011O05+ AATTTGAAGCTGCTTGGGCATTAACAAATGTAGCATCTGGTACATCAGAACATACACGGG
JMFF029A01+ AATTTGAAGCTGCTTGGGCA
JMFF041E14+ AATTTGAAGCTGCTTGGGCATTAACAAATGTAGCATCTGGTACATCAGAACATACACGGG
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consensus AATTTGAAGCTGCTTGGGCATTAACAAATGTAGCATCTGGTACATCAGAACATACACGGG

. : . : . : . : . : . :
JMFS134C01+ TTGTCATTGAACATGGTGCTGTCCCTAAGTTTATACAACTT
JMSF053O15+ TTGTCATTGAACATGGTGCTGTCCCTAAGTTTATACAACTTCTTAGCTCACCAAGTGATG
JMFF011O05+ TTGTCATTGAACATGGTGCTGTCCCTAAGTTTATACAACTTCTTAGCTCACCAAGTGATG
JMFF041E14+ TTGTCATTGAACATGGTGCTGTCCCTAAGTTTATACAACTTCTTAGCTCACCAAGTGATG
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consensus TTGTCATTGAACATGGTGCTGTCCCTAAGTTTATACAACTTCTTAGCTCACCAAGTGATG

. : . : . : . : . : . :
JMSF053O15+ ATGTTCGTGAGCAGGCAGTCTGGGCCTTGGGAAATGTGGCTGGTGATTCTCCNACCTGTA
JMFF011O05+ ATGTTCGTGAGCAGGCAGTCTGGGCCTT
JMFF041E14+ ATGTTCGTGAGCAGGCAGTCTGGGCCTTGGGAAATGTGGCTGGTGATTCTCCAACCTGT
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consensus ATGTTCGTGAGCAGGCAGTCTGGGCCTTGGGAAATGTGGCTGGTGATTCTCCAACCTGTA

. : . : . : . : . : . :
JMSF053O15+ GGGATCTGGTTCTTGGTATGGTGCACTCTTGCCATTGCTAGCTCAAT
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consensus GGGATCTGGTTCTTGGTATGGTGCACTCTTGCCATTGCTAGCTCAAT