Alignment Contig 4703

                          .    :    .    :    .    :    .    :    .    :    .    :

JMFN009E14- AAGATCAAAGTATCAAAGGAACAAGCTCTTCAAAGTTGTGGGTACAAAGTATCAGACTTA
JMFS111E10+ AAGATCAAAGTATCAAAGGAACAAGCTCTTCAAAGTTGGGGGTACAAAGTATCAGACTTA
rJMFF016H16+ GTGGGTACAAAGTATCAGACTTA
JMFS093H06- GGGTACAAAGTATCAGACTTA
rJMSF042G12+ AAGTATCAGACTTA
rJMSF021O07+ AAGTATCAGACTTA
rJMFF029M16+ CTTA
____________________________________________________________
consensus AAGATCAAAGTATCAAAGGAACAAGCTCTTCAAAGTTGTGGGTACAAAGTATCAGACTTA

. : . : . : . : . : . :
JMFN009E14- TATCATACCGAG-TAGCTGTAGATACAACTTACAAAGGGGAATTAAAGGATATTATATCA
JMFS111E10+ TATCATACCGAG-TAGCTGTAGATACAACTTACAAAGGGGAATTAAAGGATATTATATCA
rJMFF016H16+ TATCATACCGAG-TAGCTGTAGATACAACTTACAAAGGGGAATTAAAGGATATTATATCA
JMFS093H06- TATCATACCGAG-TAGCTGTAGATACAACTTACAAAGGGGAATTAAAGGATATTATATCA
rJMSF042G12+ TATCATACCGAGCTAGCTGTAGATACAACTTACAAAGGGGAATTAAAGGATATTATATCA
rJMFF050C16+ ACAACTTACAAAGGGGAATTAAAGGATATTATATCA
rJMSF021O07+ TATCATACCGAG-TAGCTGTAGATACAACTTACAAAGGGGAATTAAAGGATATTATATCA
rJMFF029M16+ TATCATACCGAG-TAGCTGTAGATACAACTTACAAAGGGGAATTAAAGGATATTATATCA
rJMFF003C17+ TACCGAG-TAGCTGTAGATACAACTTACAAAGGGGAATTAAAGGATATTATATCA
____________________________________________________________
consensus TATCATACCGAG-TAGCTGTAGATACAACTTACAAAGGGGAATTAAAGGATATTATATCA

. : . : . : . : . : . :
JMFN009E14- ATACAAATATAATAAATTTATGAGTAAAAAGAATAAAGATAGTACAAACTACAAATTAAA
JMFS111E10+ ATACAAATATAATAAATTTATGAGTAAAAAGAATAAAGATAGTACAAACTACAAATTAAA
rJMFF016H16+ ATACAAATATAATAAATTTATGAGTAAAAAGAATAAAGATAGTACAAACTACAAATTAAA
JMFS093H06- ATACAAATATAATAAATTTATGAGTAAAAAGAATAAAGATAGTACAAACTACAAATTAAA
rJMSF042G12+ ATACAAATATAATAAATTTATGAGTAAAAAGAATAAAGATAGTACAAACTACAAATTAAA
rJMFF050C16+ ATACAAATATAATAAATTTATGAGTAAAAAGAATAAAGATAGTACAAACTACAAATTAAA
rJMSF021O07+ ATACAAATATAATAAATTTATGAGTAAAAAGAATAAAGATAGTACAAACTACAAATTAAA
rJMFF029M16+ ATACAAATATAATAAATTTATGAGTAAAAAGAATAAAGATAGTACAAACTACAAATTAAA
rJMFF003C17+ ATACAAATATAATAAATTTATGAGTAAAAAGAATAAAGATAGTACAAACTACAAATTAAA
____________________________________________________________
consensus ATACAAATATAATAAATTTATGAGTAAAAAGAATAAAGATAGTACAAACTACAAATTAAA

. : . : . : . : . : . :
JMFN009E14- GATCAAGCCTTTAAAGCTTAACCTCGTGATAGTGCATTGCCTTACCTTGGATTGAGAGCG
JMFS111E10+ GATCAAGCCTTTAAAGCTTAACCTCGTGATAGTGCATTGCCTTACCTTGGATTGAAAGCG
rJMFF016H16+ GATCAAGCCTTTAAAGCTTAACCTCGTGATAGTGCATTGCCTTACCTTGGATTGAGAGCG
JMFS093H06- GATCAAGCCTTTAAAGCTTAACCTCGTGATAGTGCATTGCCTTACCTTGGATTGAGAGCG
rJMSF042G12+ GATCAAGCCTTTAAAGCTTAACCTCGTGATAGTGCATTGCCTTACCTTGGATTGAGAGCG
rJMFF050C16+ GATCAAGCCTTTAAAGCTTAACCTCGTGATAGTGCATTGCCTTACCTTGGATTGAGAGCG
rJMSF021O07+ GATCAAGCCTTTAAAGCTTAACCTCGTGATAGTGCATTGCCTTACCTTGGATTGAGAGCG
rJMFF029M16+ GATCAAGCCTTTAAAGCTTAACCTCGTGATAGTGCATTGCCTTACCTTGGATTGAGAGCG
rJMFF003C17+ GATCAAGCCTTTAAAGCTTAACCTCGTGATAGTGCATTGCCTTACCTTGGATTGAGAGCG
____________________________________________________________
consensus GATCAAGCCTTTAAAGCTTAACCTCGTGATAGTGCATTGCCTTACCTTGGATTGAGAGCG

. : . : . : . : . : . :
JMFN009E14- GGTGGGTGGCGGGCAGTGTTTGTTTCAAGACTCAACGTCCCTTCGGGTTCATGATCTGAG
JMFS111E10+ GGTGGGTGGCGGGCAGTGTTTGTTTCAAGACTCAACGTCCCTTCGGGTTCATGATCTGAG
rJMFF016H16+ GGTGGGTGGCGGGCAGTGTTTGTTTCAAGACTCAACGTCCCTTCGGGTTCATGATCTGAG
JMFS093H06- GGTGGGTGGCGGGCAGTGTTTGTTTCAAGACTCAACGTCCCTTCGGGTTCATGATCTGAG
rJMSF042G12+ GGTGGGTGGCGGGCAGTGTTTGTTTCAAGACTCAACGTCCCTTCGGGTTCATGATCTGAG
rJMFF050C16+ GGTGGGTGGCGGGCAGTGTTTGTTTCAAGACTCAACGTCCCTTCGGGTTCATGATCTGAG
rJMSF021O07+ GGTGGGTGGCGGGCAGTGTTTGTTTCAAGACTCAACGTCCCTTCGGGTTCATGATCTGAG
rJMFF029M16+ GGTGGGTGGCGGGCAGTGTTTGTTTCAAGACTCAACGTCCCTTCGGGTTCATGATCTGAG
rJMFF003C17+ GGTGGGTGGCGGGCAGTGTTTGTTTCAAGACTCAACGTCCCTTCGGGTTCATGATCTGAG
____________________________________________________________
consensus GGTGGGTGGCGGGCAGTGTTTGTTTCAAGACTCAACGTCCCTTCGGGTTCATGATCTGAG

. : . : . : . : . : . :
JMFN009E14- AGAAGACGGCGCTGGGTGTCAACCCGTCTGAGTCTTCACTGGCGAGACTCCGGCCACCAA
JMFS111E10+ AAAAGACGGCGCTGGGTGTCAACCCGTCTGAGTCTTCACTGGCGAGACTCCGGCCACCAA
rJMFF016H16+ AGAAGACGGCGCTGGGTGTCAACCCGTCTGAGTCTTCACTGGCGAGACTCCGGCCACCAA
JMFS093H06- AGAAGACGGCGCTGGGTGTCAACCCGTCTGAGTCTTCACTGGCGAGACTCCGGCCACCAA
rJMSF042G12+ AGAAGACGGCGCTGGGTGTCAACCCGTCTGAGTCTTCACTGGCGAGACTCCGGCCACCAA
rJMFF050C16+ AGAAGACGGCGCTGGGTGTCAACCCGTCTGAGTCTTCACTGGCGAGACTCCGGCCACCAA
rJMSF021O07+ AGAAGACGGCGCTGGGTGTCAACCCGTCTGAGTCTTCACTGGCGAGACTCCGGCCACCAA
rJMFF029M16+ AGAAGACGGCGCTGGGTGTCAACCCGTCTGAGTCTTCACTGGCGAGACTCCGGCCACCAA
rJMFF003C17+ AGAAGACGGCGCTGGGTGTCAACCCGTCTGAGTCTTCACTGGCGAGACTCCGGCCACCAA
JMFS049A04- TGGGTGTCAACCCGTCTGAGTCTTCACTGGCGAGACTCCGGCCACCAA
____________________________________________________________
consensus AGAAGACGGCGCTGGGTGTCAACCCGTCTGAGTCTTCACTGGCGAGACTCCGGCCACCAA

. : . : . : . : . : . :
JMFN009E14- TGCTCATCGATATCCCGCTGCTTTGTGTATCAGTCATGCTTGCATCAAAACCAGGGGATG
JMFS111E10+ TGCTCATCGATATCCCGCTGCTTTGTGTATCAGTCATGCTTGCATCAAAACCAGGGGATG
rJMFF016H16+ TGCTCATCGATATCCCGCTGCTTTGTGTATCAGTCATGCTTGCATCAAAACCAGGGGATG
JMFS093H06- TGCTCATCGATATCCCGCTGCTTTGTGTATCAGTCATGCTTGCATCAAAACCAGGGGATG
rJMSF042G12+ TGCTCATCGATATCCCGCTGCTTTGTGTATCAGTCATGCTTGCATCAAAACCAGGGGATG
JMFS048E02- GTGTATCAGTCATGCTTGCATCAAAACCAGGGGATG
rJMFF050C16+ TGCTCATCGATATCCCGCTGCTTTGTGTATCAGTCATGCTTGCATCAAAACCAGGGGATG
rJMSF021O07+ TGCTCATCGATATCCCGCTGCTTTGTGTATCAGTCATGCTTGCATCAAAACCAGGGGATG
rJMFF029M16+ TGCTCATCGATATCCCGCTGCTTTGTGTATCAGTCATGCTTGCATCAAAACCAGGGGATG
rJMFF003C17+ TGCTCATCGATATCCCGCTGCTTTGTGTATCAGTCATGCTTGCATCAAAACCAGGGGATG
JMFS049A04- TGCTCATCGATATCCCGCTGCTTTGTGTATCAGTCATGCTTGCATCAAAACCAGGGGATG
____________________________________________________________
consensus TGCTCATCGATATCCCGCTGCTTTGTGTATCAGTCATGCTTGCATCAAAACCAGGGGATG

. : . : . : . : . : . :
JMFN009E14- CCTCGGGGTCCTTCTTGTCTTTACAAG
JMFS111E10+ CCTCGGGGTCCTTCTTGTCTTTACAAGTCACATCAAAGCCCTCTTCGATGTCTATTCCTC
rJMFF016H16+ CCTCGGGGTCCTTCTTGTCTTTACAAGTCACATCAAAGCCCTCTTCGATGTCTATTCCTC
JMFS093H06- CCTCGGGGTCCTTCTTGTCTTTACAAGTCACATCAAAGCCCTCTTCGATGTCTATTCCTC
rJMSF042G12+ CCTCGGGGTCCTTCTTGTCTTTACAAGTCACATCAAAGCCCTCTTCGATGTCTATTCCTC
JMFS048E02- CCTCGGGGACCTTTTTGTCTTAACAAGTCACATCATAGCCCTCTTAGATGTATATTCCTC
rJMFF050C16+ CCTCGGGGTCCTTCTTGTCTTTACAAGTCACATCAAAGCCCTCTTCGATGTCTATTCCTC
rJMSF021O07+ CCTCGGGGTCCTTCTTGTCTTTACAAGTCACATCAAAGCCCTCTTCGATGTCTATTCCTC
rJMFF029M16+ CCTCGGGGTCCTTCTTGTCTTTACAAGTCACATCAAAGCCCTCTTCGATGTCTATTCCTC
rJMFF003C17+ CCTCGGGGTCCTTCTTGTCTTTACAAGTCACATCAAAGCCCTCTTCGATGTCTATTCCTC
JMFS049A04- CCTCGGGGTCCTTCTTGTCTTTACAAGTCACATCAAAGCCCTCTTCGATGTCTATTCCTC
____________________________________________________________
consensus CCTCGGGGTCCTTCTTGTCTTTACAAGTCACATCAAAGCCCTCTTCGATGTCTATTCCTC

. : . : . : . : . : . :
JMFS111E10+ CGAGCCCCCCTTTGCCGCTTTCCTCTGCGCTCTCTTGAAGTTGTAGAGCGAAT
rJMFF016H16+ CGAGCCCCCCTTTGCCGCTTTCCTCTGCGCTCTCTTGAAGTTGTAGAGCGAATTCGAGGT
JMFS093H06- CGAGCCCCCCTTTGCCGCTTTCCTCTGCGCTCTCTTGAAGTTGT
rJMSF042G12+ CGAGCCCCCCTTTGCCGCTTTCCTCTGCGCTCTCTTGAAGTTGTAGAGCGAATTCGAGGT
JMFS048E02- TGAGCCCCCCTTTGTCGTTTTCCTTTGCGCTCACTTGAAGTTGTAGAGCGAATTAGAGGT
rJMFF050C16+ CGAGCCCCCCTTTGCCGCTTTCCTCTGCGCTCTCTTGAAGTTGTAGAGCGAATTCGAGGT
rJMSF021O07+ CGAGCCCCCCTTTGCCGCTTTCCTCTGCGCTCTCTTGAAGTTGTAGAGCGAATTCGAGGT
rJMFF029M16+ CGAGCCCCCCTTTGCCGCTTTCCTCTGCGCTCTCTTGAAGTTGTAGAGCGAATTCGAGGT
rJMFF003C17+ CGAGCCCCCCTTTGCCGCTTTCCTCTGCGCTCTCTTGAAGTTGTAGAGCGAATTCGAGGT
JMFS049A04- CGAGCCCCCCTTTGCCGCTTTCCTCTGCGCTCTCTTGAAGTTGTAGAGCGAATTCGAGGT
____________________________________________________________
consensus CGAGCCCCCCTTTGCCGCTTTCCTCTGCGCTCTCTTGAAGTTGTAGAGCGAATTCGAGGT

. : . : . : . : . : . :
rJMFF016H16+ TCCAAAGAACATCGCCCATCGAGGGCCTATCCGTTCCAACATCAGCTACACACTTCACTG
rJMSF042G12+ TCCAAAGAACATCGCCCATCGAGGGCCTATCCGTTCCAACATCAGCTACACACTTCACTG
JMFS048E02- TCCAAAGAACATCGCCCATGAAGGGCCTATCGGTCCCAACATTAGCTACACAATTCACTG
rJMFF050C16+ TCCAAAGAACATCGCCCATCGAGGGCCTATCCGTTCCAACATCAGCTACACACTTCACTG
rJMSF021O07+ TCCAAAGAACATCGCCCATCGAGGGCCTATCCGTTCCAACATCAGCTACACACTTCACTG
rJMFF029M16+ TCCAAAGAACATCGCCCATCGAGGGCCTATCCGTTCCAACATCAGCTACACACTTCACTG
rJMFF003C17+ TCCAAAGAACATCGCCCATCGAGGGCCTATCCGTTCCAACATCAGCTACACACTTCACTG
JMFS049A04- TCCAAAGAACATCGCCCATCGAGGGCCTATCCGTTCCAACATCAGCTACACACTTCACTG
____________________________________________________________
consensus TCCAAAGAACATCGCCCATCGAGGGCCTATCCGTTCCAACATCAGCTACACACTTCACTG

. : . : . : . : . : . :
rJMFF016H16+ CTGTCTCCGCGAATTTCTTGAAGCATTCGGG-TGCAATCTTGCCCTTCAAATAAGGGTCT
rJMSF042G12+ CTGTCTCCGCGAATTTCTTGAAGCATTCGGG-TGCAATCTTGCCCTTCAAATAAGGGTCT
JMFS048E02- TTGTATCCGCGAAAGTCTTGAAGCACAGGGG-GGCAATCTTGCCCTACAAATAAGGGTGT
rJMFF050C16+ CTGTCTCCGCGAATTTCTTGAAGCATTCGGG-TGCAATCTTGCCCCTTCAATAAGGGTCT
rJMSF021O07+ CTGTCTCCGCGAATTTCTTGAAGCATTCGGG-TGCAATCTTGCCCTTCAAATAAGGGTCT
rJMFF029M16+ CTGTCTCCGCGAATTTCTTGAAGCATTCGGGGTGCAATCTTGCCCTTCAAATAAGGGTCT
rJMFF003C17+ CTGTCTCCGCGAATTTCTTGAAGCATTCGGG-TGCAATCTTGCACTTCAAATAAGGGTCT
JMFS049A04- CTGTCTCCGCGAATTTCTTGAAGCATTCGGG-TGCAATCTTGCCCTTCAAATAAGGGTCT
____________________________________________________________
consensus CTGTCTCCGCGAATTTCTTGAAGCATTCGGG-TGCAATCTTGCCCTTCAAATAAGGGTCT

. : . : . : . : . : . :
rJMFF016H16+ GTGATTTGATCAAGAATGCCCTTCTTATGGCAATGGAAAGCCCATTCTGCTAAGCTCACT
rJMSF042G12+ GTGATTTGATCAAGAATGCCCTTCTTATGGCAATGGAAAGCCCATTCTGCTAAGCTCACT
JMFS048E02- GTGAAGTGATCAAGAATGCCCGTATTATGGCAATGGAAAGCCCAGGAAGNGAAGGTCACT
rJMFF050C16+ GTGATTTGATCNAGAATGCCCTTCTTAT
rJMSF021O07+ GTGATTTGATCAAGAATGCCCTTCTTATGGCAATGGAAAGCCCATTCTGCTAAGCTCACT
rJMFF029M16+ GTGATTTGATCAAGAATGCCCTTCTTATGGCAATGGAAAGC
rJMFF003C17+ GTGATTTGATCAAGAATGCCCTTCTTATGGCAATGGAAAGCCCATTCTGCTAAGCTCACT
JMFS049A04- GTGATTTGATCAAGAATGCCCTTCTTATGGCAATGGAAAGCCCATTCTGCTAAGCTCACT
____________________________________________________________
consensus GTGATTTGATCAAGAATGCCCTTCTTATGGCAATGGAAAGCCCATTCTGCTAAGCTCACT

. : . : . : . : . : . :
rJMFF016H16+ TGCTCCTTGGGGGAGGGTTGGGTTCAATGCANGGCGGGCACACAAAATCTCGAAAAGTAC
rJMSF042G12+ TGCTCCTTGGGG-AGGGTTGGGTTCAATGCAGGGCGGGCACACAAAATCTCGAAAAGTAC
JMFS048E02- GGCTCCTNGGGG-AGGGTTGGGTNCAATGCAGGGAGGGCACACAAAATCTAGAAAAGATC
rJMSF021O07+ TGCTCCTTGGGG-AGGGTTGGGTTCAATGCAGGGCGGGCACACAAAATCTCGAAAAGTAC
rJMFF003C17+ TGCTCCTTGGGG
JMFS049A04- TGCTCCTTGGGG-AGGGTTGGGTTCAATGCAGGGCGGGCACACAAAATCTCGAAAAGTAC
____________________________________________________________
consensus TGCTCCTTGGGG-AGGGTTGGGTTCAATGCAGGGCGGGCACACAAAATCTCGAAAAGTAC

. : . : . : . : . : . :
rJMFF016H16+ CACACCAAATGAATAGACATCTGACTTTT-CAGTGAGTTGCTGTCTTCTGAA
rJMSF042G12+ CACACCAAATGAATAGACATCTGACTTTTTCAGTGAGTTGCTGTCTTCTGAA
JMFS048E02- CACACCAAATGAATAGACA
rJMSF021O07+ CACACCAAATGAATAGACATCTGAC
JMFS049A04- CACACCAAATGAATAGACATCTGACTTTT-CAGTGAGTTGCTGTCTTCTGAAGTACTCGG
____________________________________________________________
consensus CACACCAAATGAATAGACATCTGACTTTT-CAGTGAGTTGCTGTCTTCTGAAGTACTCGG

. : . : . : . : . : . :
JMFS049A04- GATCCAGATACCCAAAACTACCCTTAACTACAGTACTTACATGGGTGTGATCCAAAGTGG
____________________________________________________________
consensus GATCCAGATACCCAAAACTACCCTTAACTACAGTACTTACATGGGTGTGATCCAAAGTGG

. : . : . : . : . : . :
JMFS049A04- GACCTGTCTTCGACAACCCGAAATCAGACAC
____________________________________________________________
consensus GACCTGTCTTCGACAACCCGAAATCAGACAC