Alignment Contig 4645

                          .    :    .    :    .    :    .    :    .    :    .    :

JMFF045B10+ AACACTTCACTATACAACAACCTCTCTCTCTCTCCTCCTCCTTCCATGG-CTTCCCCCAA
JMFF025H01+ ACTTCACTATACAACAACCTCTCTCTCTCTCCTCCTCCTTCCATGG-CTTCCCCCAA
JMSF023A06+ ACTTCACTATACAACAACCTCTCTCTCTCTCCTCCTCCTTCCATGG-CTTCCCCCAA
JMFF049F20+ ACTTCACTATACAACAACCTCTCTCTCTCTCCTCCTCCTTCCATGG-CTTCCCCCAA
JMFF041D17+ TTCACTATACAACAACCTCTCTCTCTCTCCTCCTCCTTCCATGGGCTTCCCCCAA
JMFN005A03+ AACAACCTCTCTCTCTCTCCTCCTCCTTCCATGGGCTTCCCCCAA
JMSF046E16+ ACTATACAACAACCTCTCTCTCTCTCCTCCTCCTTCCATGG-CTTCCCCCAA
JMSF046F10+ ACTATACAACAACCTCTCTCTCTCTCCTCCTCCTTCCATGG-CTTCCCCCAA
____________________________________________________________
consensus AACACTTCACTATACAACAACCTCTCTCTCTCTCCTCCTCCTTCCATGG-CTTCCCCCAA

. : . : . : . : . : . :
JMFF045B10+ CCAAATCTTCATCTTCTTCCTCCTCACTCTCTTATCCTCCCTGCAAATTCTTCAAGCAAG
JMFF025H01+ CCAAATCTTCATCTTCTTCCTCCTCACTCTCTTATCCTCCCTGCAAATTCTTCAAGCAAG
JMSF023A06+ CCAAATCTTCATCTTCTTCCTCCTCACTCTCTTATCCTCCCTGCAAATTCTTCAAGCAAG
JMFF049F20+ CCAAATCTTCATCTTCTTCCTCCTCACTCTCTTATCCTCCCTGCAAATTCTTCAAGCAAG
JMFF041D17+ CCAAATCTTCATCTTCTTCCTCCTCACTCTCTTATCCTCCCTGCAAATTCTTCAAGCAAG
JMFN005A03+ CCAAATCTTCATCTTCTTCCTCCTCACTCTCTTATCCTCCCTGCAAATTCTTCAAGCAAG
JMSF046E16+ CCAAATCTTCATCTTCTTCCTCCTCACTCTCTTATCCTCCCTGCAAATTCTTCAAGCAAG
JMFN004H19+ AAGCAAG
JMSF046F10+ CCAAATCTTCATCTTCTTCCTCCTCACTCTCTTATCCTCCCTGCAAATTCTTCAAGCAAG
JMSF046M13+ GCAAG
____________________________________________________________
consensus CCAAATCTTCATCTTCTTCCTCCTCACTCTCTTATCCTCCCTGCAAATTCTTCAAGCAAG

. : . : . : . : . : . :
JMFF045B10+ AGACAGCCAATTCTTCAACAAAATCCCTAGCAACAACAACAACAATAGCAGCAGCAAAGA
JMFF025H01+ AGACAGCCAATTCTTCAACAAAATCCCTAGCAACAACAACAACAATAGCAGCAGCAAAGA
JMSF023A06+ AGACAGCCAATTCTTCAACAAAATCCCTAGCAACAACAACAACAATAGCAGCAGCAAAGA
JMFF049F20+ AGACAGCCAATTCTTCAACAAAATCCCTAGCAACAACAACAACAATAGCAGCAGCAAAGA
JMFF041D17+ AGACAGCCAATTCTTCAACAAAATCCCTAGCAACAACAACAACAATAGCAGCAGCAAAGA
JMFN005A03+ AGACAGCCAATTCTTCAACAAAATCCCTAGCAACAACAACAACAATAGCAGCAGCAAAGA
JMSF046E16+ AGACAGCCAATTCTTCAACAAAATCCCTAGCAACAACAACAACAATAGCAGCAGCAAAGA
JMFN004H19+ AGACAGCCAATTCTTCAACAAAATCCCTAGCAACAACAACAACAATAGCAGCAGCAAAGA
JMSF046F10+ AGACAGCCAATTCTTCAACAAAATCCCTAGCAACAACAACAACAATAGCAGCAGCAAAGA
JMSF046M13+ AGACAGCCAATTCTTCAACAAAATCCCTAGCAACAACAACAACAATAGCAGCAGCAAAGA
JMFN007D06+ CTTCAACAAAATCCCTAGCAACAACAACAACAATAGCAGCAGCAAAGA
____________________________________________________________
consensus AGACAGCCAATTCTTCAACAAAATCCCTAGCAACAACAACAACAATAGCAGCAGCAAAGA

. : . : . : . : . : . :
JMFF045B10+ GCAATCTGCAACTGTGGTTCCTCTGCAGAAAGAACCAAATTTCATCCCGGAGAATGAAAC
JMFF025H01+ GCAATCTGCAACTGTGGTTCCTCTGCAGAAAGAACCAAATTTCATCCCGGAGAATGAAAC
JMSF023A06+ GCAATCTGCAACTGTGGTTCCTCTGCAGAAAGAACCAAATTTCATCCCGGAGAATGAAAC
JMFF049F20+ GCAATCTGCAACTGTGGTTCCTCTGCAGAAAGAACCAAATTTCATCCCGGAGAATGAAAC
JMFF041D17+ GCAATCTGCAACTGTGGTTCCTCTGCAGAAAGAACCAAATTTCATCCCGGAGAATGAAAC
JMFN005A03+ GCAATCTGCAACTGTGGTTCCTCTGCAGAAAGAACCAAATTTCATCCCGGAGAATGAAAC
JMSF046E16+ GCAATCTGCAACTGTGGTTCCTCTGCAGAAAGAACCAAATTTCATCCCGGAGAATGAAAC
JMFN004H19+ GCAATCTGCAACTGTGGTTCCTCTGCAGAAAGAACCAAATTTCATCCCGGAGAATGAAAC
JMSF046F10+ GCAATCTGCAACTGTGGTTCCTCTGCAGAAAGAACCAAATTTCATCCCGGAGAATGAAAC
JMSF046M13+ GCAATCTGCAACTGTGGTTCCTCTGCAGAAAGAACCAAATTTCATCCCGGAGAATGAAAC
JMFN007D06+ GCAATCTGCAACTGTGGTTCCTCTGCAGAAAGAACCAAATTTCATCCCGGAGAATGAAAC
____________________________________________________________
consensus GCAATCTGCAACTGTGGTTCCTCTGCAGAAAGAACCAAATTTCATCCCGGAGAATGAAAC

. : . : . : . : . : . :
JMFF045B10+ CAGCGGCTATGGCCTCTACGGCCATGAATCCGGCCAGCTTCCTCCGTCCGCCACCGCCGT
JMFF025H01+ CAGCGGCTATGGCCTCTACGGCCATGAATCCGGCCAGCTTCCTCCGTCCGCCACCGCCGT
JMSF023A06+ CAGCGGCTATGGCCTCTACGGCCATGAATCCGGCCAGCTTCCTCCGTCCGCCACCGCCGT
JMFF049F20+ CAGCGGCTATGGCCTCTACGGCCATGAATCCGGCCAGCTTCCTCCGTCCGCCACCGCCGT
JMFF041D17+ CAGCGGCTATGGCCTCTACGGCCATGAATCCGGCCAGCTTCCTCCGTCCGCCACCGCCGT
JMFN005A03+ CAGCGGCTATGGCCTCTACGGCCATGAATCCGGCCAGCTTCCTCCGTCCGCCACCGCCGT
JMSF046E16+ CAGCGGCTATGGCCTCTACGGCCATGAATCCGGCCAGCTTCCTCCGTCCGCCACCGCCGT
JMFN004H19+ CAGCGGCTATGGCCTCTACGGCCATGAATCCGGCCAGCTTCCTCCGTCCGCCACCGCCGT
JMSF046F10+ CAGCGGCTATGGCCTCTACGGCCATGAATCCGGCCAGCTTCCTCCGTCCGCCACCGCCGT
JMSF046M13+ CAGCGGCTATGGCCTCTACGGCCATGAATCCGGCCAGCTTCCTCCGTCCGCCACCGCCGT
JMFN007D06+ CAGCGGCTATGGCCTCTACGGCCATGAATCCGGCCAGCTTCCTCCGTCCGCCACCGCCGT
____________________________________________________________
consensus CAGCGGCTATGGCCTCTACGGCCATGAATCCGGCCAGCTTCCTCCGTCCGCCACCGCCGT

. : . : . : . : . : . :
JMFF045B10+ CAACAACCATGCAGAGGCGGAGGAAGTTCCTTACAAGAAATACCTTCCCAAGAACTATAA
JMFF025H01+ CAACAACCATGCAGAGGCGGAGGAAGTTCCTTACAAGAAATACCTTCCCAAGAACTATAA
JMSF023A06+ CAACAACCATGCAGAGGCGGAGGAAGTTCCTTACAAGAAATACCTTCCCAAGAACTATAA
JMFF049F20+ CAACAACCATGCAGAGGCGGAGGAAGTTCCTTACAAGAAATACCTTCCCAAGAACTATAA
JMFF041D17+ CAACAACCATGCAGAGGCGGAGGAAGTTCCTTACAAGAAATACCTTCCCAAGAACTATAA
JMFN005A03+ CAACAACCATGCAGAGGCGGAGGAAGTTCCTTACAAGAAATACCTTCCCAAGAACTATAA
JMSF046E16+ CAACAACCATGCAGAGGCGGAGGAAGTTCCTTACAAGAAATACCTTCCCAAGAACTATAA
JMFN004H19+ CAACAACCATGCAGAGGCGGAGGAAGTTCCTTACAAGAAATACCTTCCCAAGAACTATAA
JMSF046F10+ CAACAACCATGCAGAGGCGGAGGAAGTTCCTTACAAGAAATACCTTCCCAAGAACTATAA
JMSF046M13+ CAACAACCATGCAGAGGCGGAGGAAGTTCCTTACAAGAAATACCTTCCCAAGAACTATAA
JMFN007D06+ CAACAACCATGCAGAGGCGGAGGAAGTTCCTTACAAGAAATACCTTCCCAAGAACTATAA
____________________________________________________________
consensus CAACAACCATGCAGAGGCGGAGGAAGTTCCTTACAAGAAATACCTTCCCAAGAACTATAA

. : . : . : . : . : . :
JMFF045B10+ CCCCGTTGCCTATGTAACTGTCCCGGAGGACAACAATAATGATGACGCTAAGTTCATGGC
JMFF025H01+ CCCCGTTGCCTATGTAACTGTCCCGGAGGACAACAATAATGATGACGCTAAGTTCATGGC
JMSF023A06+ CCCCGTTGCCTATGTAACTGTCCCGGAGGACAACAATAATGATGACGCTAAGTTCATGGC
JMFF049F20+ CCCCGTTGCCTATGTAACTGTCCCGGAGGACAACAATAATGATGACGCTAAGTTCATGGC
JMFF041D17+ CCCCGTTGCCTATGTAACTGTCCCGGAGGACAACAATAATGATGACGCTAAGTTCATGGC
JMFN005A03+ CCCCGTTGCCTATGTAACTGTCCCGGAGGACAACAATAATGATGACGCTAAGTTCATGGC
JMSF046E16+ CCCCGTTGCCTATGTAACTGTCCCGGAGGATAACAATAATGATGACGCTAAGTTCATGGC
JMFN004H19+ CCCCGTTGCCTATGTAACTGTCCCGGAGGACAACAATAATGATGACGCTAAGTTCATGGC
JMSF046F10+ CCCCGTTGCCTATGTAACTGTCCCGGAGGATAACAATAATGATGACGCTAAGTTCATGGC
JMSF046M13+ CCCCGTTGCCTATGTAACTGTCCCGGAGGACAACAATAATGATGACGCTAAGTTCATGGC
JMFN007D06+ CCCCGTTGCCTATGTAACTGTCCCGGAGGACAACAATAATGATGACGCTAGGTTCATGGC
____________________________________________________________
consensus CCCCGTTGCCTATGTAACTGTCCCGGAGGACAACAATAATGATGACGCTAAGTTCATGGC

. : . : . : . : . : . :
JMFF045B10+ CGCCGCCGCCGACAACGACAACCGCGGGTTCTACAACGGCGGCAAGGAGTTCGCCGGCGC
JMFF025H01+ CGCCGCCGCCGACAACGACAACCGCCGGTTCTACAACGGCGGCAAGGAGTTCGCCGGCGC
JMSF023A06+ CGCCGCCGCCGACAACGACAACCGCCGGTTCTACAACGGCGGCAAGGAGTTCGCCGGCGC
JMFF049F20+ CGCCGCCGCCGACAACGACAACCGCCGGTTCTACAACGGCGGCAAGGAGTTCGCCGGCGC
JMFF041D17+ CGCCGCCGCCGACAACGACAACCGCCGGTTCTACAACGGCGGCAAGGAGTTCGCCGGCGC
JMFN005A03+ CGCCGCCGCCGACAACGACAACCGCCGGTTCTACAACGGCGGCAAGGAGTTCGCCGGCGC
JMSF046E16+ CGCCGCCGCCGACAACGACAACCGCCGGTTCTACAACGGCGGCAAGGAGTTCGCCGGCGC
JMFN004H19+ CGCCGCCGCCGACAACGACAACCGCCGGTTCTACAACGGCGGCAAGGAGTTCGCCGGCGC
JMSF046F10+ CGCCGCCGCCGACAACGACAACCGCCGGTTCTACAACGGCGGCAAGGAGTTCGCCGGCGC
JMSF046M13+ CGCCGCCGCCGACAACGACAACCGCCGGTTCTACAACGGCGGCAAGGAGTTCGCCGGCGC
JMFN007D06+ CGCCGCCGCCGACAACGACAACCGCCGGTTCTACAACGGCGGCAAGGAGTTCGCCGGCGC
____________________________________________________________
consensus CGCCGCCGCCGACAACGACAACCGCCGGTTCTACAACGGCGGCAAGGAGTTCGCCGGCGC

. : . : . : . : . : . :
JMFF045B10+ CGGCGGAGGCGGAGGTGAGTACTACAACGGCGGCGGGGAATCGAGAATGCCCGAGGACAC
JMFF025H01+ CGG
JMSF023A06+ CGGCGGAGG
JMFF049F20+ CGGCGGAGGCGGAGGTGAGTACTACAACGGCGGCGGGGAATCGAGAATGCCCGAGGACAC
JMFF041D17+ CGGCGGAGGCGGAGGTGAGTACTACAACGGCGGCGGGGAATCGAGAATGCCCGAGGACAC
JMFN005A03+ CGGCGGAGGCGGAGGTGAGTACTACAACGGCGGCGGGGAATCGAGAATGCCCGAGGACAC
JMSF046E16+ CGGCGGAGGCGGAGGTGAGTACTACAACGGCGGCGGGGAATCGAGAATGCCCGAGGACAC
JMFN004H19+ CGGCGGAGGCGAAGGTGAGTACTACAACGGCGGCGGGGAATCGAGAATGCCCGAGGACAC
JMSF046F10+ CGGCGGAGGCGGAGGTGAGTACTACAACGGCGGCGGGGAATCGAGAATGCCCGAGGACAC
JMSF046M13+ CGGCGGAGGCGGAGGTGAGTACTACAACGGCGGCGGGGAATCGAGAATGCCCGAGGACAC
JMFN007D06+ CGGCGGAGGCGGAGGTGAGTACTACAACGGCGGCGGGGAATCGAGAATGCCCGAGGACAC
____________________________________________________________
consensus CGGCGGAGGCGGAGGTGAGTACTACAACGGCGGCGGGGAATCGAGAATGCCCGAGGACAC

. : . : . : . : . : . :
JMFF045B10+ CAGGTTCATGGACGACAAGGAGTTCACCACCTCCGCCGCCGAATACCGCCGGGGTTTTTA
JMFF049F20+ CAGGTTCATGGACGACAAGGAGTTCACCACCTCCGCCGCCGATAACCGCCGGGGTTTTTA
JMFF041D17+ CAGGTTCATGGACGACAAGGAGTTCACCACCTCCGCCGCCGATAACCGCCGGGGTTTTTA
JMFN005A03+ CAGGTTCATGGACGACAAGGAGTTCACCACCTCCGCCGCCGATAACCGCCGGNGTTTTTA
JMSF046E16+ CAGGTTCATGGACGACAAGGAGTTCACCACCTCCGCCGCCGATAACCGCCGGGGTTTTTA
JMFN004H19+ CAGGTTCATGGACGACAAGGAGTTCACCACCTCCGCCGCCGATAACCGCCGGGGTTTTTA
JMSF046F10+ CAGGTTCATGGACGACAAGGAGTTCACCACCTCCGCCGCCGATAACCGCCGGGGTTTTTA
JMSF046M13+ CAGGTTCATGGACGACAAGGAGTTCACCACCTCCGCCGCCGATAACCGCCGGGGTTTTTA
JMFN007D06+ CAGGTTCATGGACGACAAGGAGTTCACCACCTCCGCCGCCGATAACCGCCGGGGTTTTTA
____________________________________________________________
consensus CAGGTTCATGGACGACAAGGAGTTCACCACCTCCGCCGCCGATAACCGCCGGGGTTTTTA

. : . : . : . : . : . :
JMFF045B10+ CA
JMFF049F20+ CAACGGCGCCGGAGAAATCAGAATGCCCGAC
JMFF041D17+ CAACGGCGCCGGAGAATCAAGAATGCCCGACGACACAAGATTCATGGCCGCCGATACCCG
JMFN005A03+ CAACGGCGCCGGAGAATCAAGAATGCCCGACGAC
JMSF046E16+ CAACGGCGCCGGAGAATCAAGAATGCCCGACGACACAAGATTCATGGCCGCCGATACCCG
JMFN004H19+ CAACGGCGCCGGAGAATCAAGAATGCCCGACGACACAAGATTCATGGCCGCCGATACCCG
JMSF046F10+ CAACGGCGCCGGAGAATCAAGAATGCCCGACGACACAAGATTCATGGCCGCCGATACCCG
JMSF046M13+ CAACGGCGCCGGAGAATCAAGAATGCCCGACGACACAAGATTCATGGCCGCCGATACCCG
JMFN007D06+ CAACGGCGCCGGAGAATCAAGAATGCCCGACGACACAAGATTCATGGCCGCCGATACCCG
____________________________________________________________
consensus CAACGGCGCCGGAGAATCAAGAATGCCCGACGACACAAGATTCATGGCCGCCGATACCCG

. : . : . : . : . : . :
JMFF041D17+ CC
JMSF046E16+ CCAGTACTACTATCACAACGGCGGCGGCAGATCAAGAGAATCAACCATCCCCGACGACAC
JMFN004H19+ CCAGTACTACTATCACAACGGCGGCGGCAGATCNAGAGA
JMSF046F10+ CCAGTACTACTATCACAACGGCGGCGGCAGATCAAGAGAATCAACCATCCCCGACGACAC
JMSF046M13+ CCAGTACTACTATCACAACGGCGGCGGCAGATCAAGAGAATCAACCATCCCCGACGACAC
JMFN007D06+ CCAGTACTACTATCACAACGGCGGCGGCAGATCAAGAGAATCAACCATCCCCGACGACAC
____________________________________________________________
consensus CCAGTACTACTATCACAACGGCGGCGGCAGATCAAGAGAATCAACCATCCCCGACGACAC

. : . : . : . : . : . :
JMSF046E16+ AAGATTCACGGAAAACGAGTTCACCACCGACAACCGCCGTTACAACGGCGGCGCC
JMSF046F10+ AAGATTCA
JMSF046M13+ AAGATTCACGGAAAACGAGTTCACCACCGACAACCGCCGTTACAACGGCGGCGCCGGCAA
JMFN007D06+ AAGATTCACGGAAAACGAGTTCACCACCGA
____________________________________________________________
consensus AAGATTCACGGAAAACGAGTTCACCACCGACAACCGCCGTTACAACGGCGGCGCCGGCAA

. : . : . : . : . : . :
JMSF046M13+ CAACTACTACAACAACAACCACCAAGAATCAAACTTTCCCGAAGATAAATTCACGCAGAG
____________________________________________________________
consensus CAACTACTACAACAACAACCACCAAGAATCAAACTTTCCCGAAGATAAATTCACGCAGAG

. : . : . : . : . : . :
JMSF046M13+ T
____________________________________________________________
consensus T