Alignment Contig 4611

                          .    :    .    :    .    :    .    :    .    :    .    :

JMFF038J17+ ATCACATCACTTGAGTTCTTGAAATTTTGGTTACTTTTCTTGGATCACCGGCCAACCTCA
JMSF023F15+ GGATCACCGGCCAACCTCA
____________________________________________________________
consensus ATCACATCACTTGAGTTCTTGAAATTTTGGTTACTTTTCTTGGATCACCGGCCAACCTCA

. : . : . : . : . : . :
JMFF038J17+ CCCACCCACTCCCCTCTCCGAGAAAGCTCAGAAGCTGCATTTACTCCTCCAATGGCGTCT
JMSF023F15+ CCCACCCACTCCCCTCTCCGAGAAAGCTCAGAAGCTGCATTTACTCCTCCAATGGCGTCT
JMSF021E11+ ACTCCCCTCTCCGAGAAAGCTCAGAAGCTGCATTTACTCCTCCAATGGCGTCT
JMSF028N21+ ACTCCCCTCTCCGAGAAAGCTCAGAAGCTGCATTTACTCCTCCAATGGCGTCT
____________________________________________________________
consensus CCCACCCACTCCCCTCTCCGAGAAAGCTCAGAAGCTGCATTTACTCCTCCAATGGCGTCT

. : . : . : . : . : . :
JMFF038J17+ GATAACAAGTTAAAGAACAATCAAGTAGTTTCTACTATGATCAAGCAAGGCTTCATTTCT
JMSF023F15+ GATAACAAGTTAAAGAACAATCAAGTAGTTTCTACTATGATCAAGCAAGGCTTCATTTCT
JMSF021E11+ GATAACAAGTTAAAGAACAATCAAGTAGTTTCTACTATGATCAAGCAAGGCTTCATTTCT
JMSF028N21+ GATAACAAGTTAAAGAACAATCAAGTAGTTTCTACTATGATCAAGCAAGGCTTCATTTCT
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consensus GATAACAAGTTAAAGAACAATCAAGTAGTTTCTACTATGATCAAGCAAGGCTTCATTTCT

. : . : . : . : . : . :
JMFF038J17+ GACCCTTTCTTTTCTTCTCCTCCTCCTACTTCCCATCATCTTCCTGCCGCTAAACTCGCC
JMSF023F15+ GACCCTTTCTTTTCTTCTCCTCCTCCTACTTCCCATCATCTTCCTGCCGCTAAACTCGCC
JMSF021E11+ GACCCTTTCTTTTCTTCTCCTCCTCCTACTTCCCATCATCTTCCTGCCGCTAAACTCGCC
JMSF028N21+ GACCCTTTCTTTTCTTCTCCTCCTCCTACTTCCCATCATCTTCCTGCCGCTAAACTCGCC
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consensus GACCCTTTCTTTTCTTCTCCTCCTCCTACTTCCCATCATCTTCCTGCCGCTAAACTCGCC

. : . : . : . : . : . :
JMFF038J17+ GCCACCGCCGTTTCTCCGCCGCCGGCGTACACCCCTGCTTCGCCTCCGCCGGCTCCGCCC
JMSF023F15+ GCCACCGCCGTTTCTCCGCCGCCGGCGTACACCCCTGCTTCGCCTCCGCCGGCTCCGCCC
JMSF021E11+ GCCACCGCCGTTTCTCCGCCGCCGGCGTACACCCCTGCTTCGCCTCCGCCGGCTCCGCCC
JMSF028N21+ GCCACCGCCGTTTCTCCGCCGCCGGCGTACACCCCTGCTTCGCCTCCGCCGGCTCCGCCC
____________________________________________________________
consensus GCCACCGCCGTTTCTCCGCCGCCGGCGTACACCCCTGCTTCGCCTCCGCCGGCTCCGCCC

. : . : . : . : . : . :
JMFF038J17+ ACCCAGACCCTCTTCGATATGATGTCCAAGGAGCAGTCTCGCAACTTCCGGCAATCCCCC
JMSF023F15+ ACCCAGACCCTCTTCGATATGATGTCCAAGGAGCAGTCTCGCAACTTCCGGCAATCACCC
JMSF021E11+ ACCCAGACCCTCTTCGATATGATGTCCAAGGAGCAGTCTCGCAACTTCCGGCAATCCCCC
JMSF028N21+ ACCCAGACCCTCTTCGATATGATGTCCAAGGAGCAGTCTCGCAACTTCCGGCAATCCCCC
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consensus ACCCAGACCCTCTTCGATATGATGTCCAAGGAGCAGTCTCGCAACTTCCGGCAATCCCCC

. : . : . : . : . : . :
JMFF038J17+ GAGGCCCGCCACCGAGTCCAGGAGCGAATCTCCCGGGTTTTGGCCCATGCACCTTTCCAA
JMSF023F15+ GAGGCCCGCCACCGAGTCCAGGAGCGAATCTCCCGGGTTTTGGCCCATGCACCTTTCCAA
JMSF021E11+ GAGGCCCGCCACCGAGTCCAGGAGCGAATCTCCCGGGTTTTGGCCCATGCACCTTTCCAA
JMSF028N21+ GAGGCCCGCCACCGAGTCCAGGAGCGAATCTCCCGGGTTTTGGCCCATGCACCTTTCCAA
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consensus GAGGCCCGCCACCGAGTCCAGGAGCGAATCTCCCGGGTTTTGGCCCATGCACCTTTCCAA

. : . : . : . : . : . :
JMFF038J17+ AGCCCCAGCCGCGCCGATGGTAATTTTATTGATGGTTCTGGGAGTGGTGGTGATGTTAAG
JMSF023F15+ AGCCCCAGCCGCGCCGATGGTAATTTTATTGATGGTTCTGGGAGTGGTGGTGATGTTAAG
JMSF021E11+ AGCCCCAGCCGCGCCGATGGTAATTTTATTGATGGTTCTGGGAGTGGTGGTGATGTTAAG
JMSF028N21+ AGCCCCAGCCGCGCCGATGGTAATTTTATTGATGGTTCTGGGAGTGGTGGTGATGTTAAG
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consensus AGCCCCAGCCGCGCCGATGGTAATTTTATTGATGGTTCTGGGAGTGGTGGTGATGTTAAG

. : . : . : . : . : . :
JMFF038J17+ CTGACGATTGCGGCGCGTGATGGGTGGCCCAAGGTTTCTATGGACGTTCA
JMSF023F15+ CTGACGATTGCGGCGCGTGATGGGTGGCCCAAGGTTTCTATGGACGTTCATCGGAGGGTG
JMSF021E11+ CTGACGATTGCGGCGCGTGATGGGTGGCCCAAGGTTTCTATGGACGTTCATCGGAGGGTG
JMSF028N21+ CTGACGATTGCGGCGCGTGATGGGTGGCCCAAGGTTTCTATGGACGTTCATCGGAGGGTG
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consensus CTGACGATTGCGGCGCGTGATGGGTGGCCCAAGGTTTCTATGGACGTTCATCGGAGGGTG

. : . : . : . : . : . :
JMSF023F15+ CTGGCCGGCCGGAGCAGATTCTTCGCGGAGAAGCTCCGGCGGAGCGGGTCGCACTCGGTG
JMSF021E11+ CTGGCCGGCCGGAGCAGATTCTTCGCGGAGAAGCTCCGGCGGAGCGGGTCGCACTCGGTG
JMSF028N21+ CTGGCCGGCCGGAGCAGATTCTTCGCGGAGAAGCTCCGGCGGAGCGGGTCGCACTCGGTG
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consensus CTGGCCGGCCGGAGCAGATTCTTCGCGGAGAAGCTCCGGCGGAGCGGGTCGCACTCGGTG

. : . : . : . : . : . :
JMSF023F15+ GAGATCCTGGATTGCGATGACGTGGAGGTGTATGTGAAGACTGTGGTGCTTATGTATTGT
JMSF021E11+ GAGATCCTGGATTGCGATGACGTGGAGGTGTATGTGAAGACTGTGGTGCTTATGTATTGT
JMSF028N21+ GAGATCCTGGATTGCGATGACGTGGAGGTGTATGTGAAGACTGTGGTGCTTATGTATTGT
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consensus GAGATCCTGGATTGCGATGACGTGGAGGTGTATGTGAAGACTGTGGTGCTTATGTATTGT

. : . : . : . : . : . :
JMSF023F15+ GAGGACTTGAAGAAGAAATTGATTGGTGAGGGTGTTTCTAAGGT
JMSF021E11+ GAGGACTTGAA
JMSF028N21+ GAGGACTTGAA
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consensus GAGGACTTGAAGAAGAAATTGATTGGTGAGGGTGTTTCTAAGGT