Alignment Contig 4387

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF045N15+ TGAAGGTGCACAGAAAATTTTGACTGAACTG-TATGTCTATGAGCAATATAAATACATTC
rJMSF001M06+ G-TATGTCTATGAGCAATATAAATACATTC
rJMSF037J14+ CACAGAAAATTTTGACTGAACTGGTATGTCTATGAGCAATATAAATACATTC
rJMSF007G06+ GTATGTCTATGAGCAATATAAATACATTC
rJMSF004K05+ TGAGCAATATAAATACATTC
rJMSF029C19+ ATTC
rJMSF032K05+ TTC
____________________________________________________________
consensus TGAAGGTGCACAGAAAATTTTGACTGAACTGGTATGTCTATGAGCAATATAAATACATTC

. : . : . : . : . : . :
rJMSF045N15+ GATTTAGTACACTCAGCTAAAATCTCTGAATTGCTAATCAAAACAATCCTTTCAGCAGTC
rJMSF001M06+ GATTTAGTACACTCNGCTAAAATCTCNGAATTGCTAATCAAACAAGTCCTTTCAGCAGTC
rJMSF037J14+ GATTTAGTACACTCAGCTAAAATCTCTGAATTGCTAATCAAAACAATCCTTTCAGCAGTC
rJMSF007G06+ GATTTAGTACACTCAGCTAAAATCTCTGAATTGCTAATCAAAACAATCCTTTCAGCAGTC
rJMSF004K05+ GATTTAGTACACTCAGCTAAAATCTCTGAATTGCTAATCAAAACAATCCTTTCAGCAGTC
rJMSF029C19+ GATTTAGTACACTCAGCTAAAATCTCTGAATTGCTAATCAAAACAATCCTTTCAGCAGTC
rJMSF032K05+ GATTTAGTACACTCAGCTAAAATCTCTGAATTGCTAATCAAAACAATCCTTTCAGCAGTC
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consensus GATTTAGTACACTCAGCTAAAATCTCTGAATTGCTAATCAAAACAATCCTTTCAGCAGTC

. : . : . : . : . : . :
rJMSF045N15+ TCTACGTGGATGGTAAGTGAAAAGAGAAAGAACATTGAGACCACCGCATAATCTCAAGCT
rJMSF001M06+ TCTACGTGGATGGTAAGTGAAAAGAGAAAGAACATTGAGACCACCGCATAATCTCAAGCT
rJMSF037J14+ TCTACGTGGATGGTAAGTGAAAAGAGAAAGAACATTGAGACCACCGCATAATCTCAAGCT
rJMSF007G06+ TCTACGTGGATGGTAAGTGAAAAGAGAAAGAACATTGAGACCACCGCATAATCTCAAGCT
rJMSF004K05+ TCTACGTGGATGGTAAGTGAAAAGAGAAAGAACATTGAGACCACCGCATAATCTCAAGCT
rJMSF029C19+ TCTACGTGGATGGTAAGTGAAAAGAGAAAGAACATTGAGACCACCGCATAATCTCAAGCT
rJMSF032K05+ TCTACGTGGATGGTAAGTGAAAAGAGAAAGAACATTGAGACCACCGCATAATCTCAAGCT
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consensus TCTACGTGGATGGTAAGTGAAAAGAGAAAGAACATTGAGACCACCGCATAATCTCAAGCT

. : . : . : . : . : . :
rJMSF045N15+ CGATTCCTTCGAATGTGAAACTACAAAGCATGTGTTGCAAAAGTCATCCTCTACTAGAAG
rJMSF001M06+ CGATTCCTTCGAATGTGAAACTACAAAGCATGTGTTGCAAAAGTCATCCTCTACTAGAAG
rJMSF037J14+ CGATTCCTTCGAATGTGAAACTACAAAGCATGTGTTGCAAAAGTCATCCTCTACTAGAAG
rJMSF007G06+ CGATTCCTTCGAATGTGAAACTACAAAGCATGTGTTGCAAAAGTCATCCTCTACTAGAAG
rJMSF004K05+ CGATTCCTTCGAATGTGAAACTACAAAGCATGTGTTGCAAAAGTCATCCTCTACTAGAAG
rJMSF029C19+ CGATTCCTTCGAATGTGAAACTACAAAGCATGTGTTGCAAAAGTCATCCTCTACTAGAAG
rJMSF032K05+ CGATTCCTTCGAATGTGAAACTACAAAGCATGTGTTGCAAAAGTCATCCTCTACTAGAAG
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consensus CGATTCCTTCGAATGTGAAACTACAAAGCATGTGTTGCAAAAGTCATCCTCTACTAGAAG

. : . : . : . : . : . :
rJMSF045N15+ TTCGTAATGTTCTCTAGTGCCATGGATTCTTCTTTCTTGTTCCGCTTCTCTTTGAGTTGC
rJMSF001M06+ TTCGTAATGTTCTCTAGTGCCATGGATTCTTCTTTCTTGTTCCGCTTCTCTTTGAGTTGC
rJMSF037J14+ TTCGTAATGTTCTCTAGTGCCATGGATTCTTCTTTCTTGTTCCGCTTCTCTTTGAGTTGC
rJMSF007G06+ TTCGTAATGTTCTCTAGTGCCATGGATTCTTCTTTCTTGTTCCGCTTCTCTTTGAGTTGC
rJMSF004K05+ TTCGTAATGTTCTCTAGTGCCATGGATTCTTCTTTCTTGTTCCGCTTCTCTTTGAGTTGC
rJMSF029C19+ TTCGTAATGTTCTCTAGTGCCATGGATTCTTCTTTCTTGTTCCGCTTCTCTTTGAGTTGC
rJMSF032K05+ TTCGTAATGTTCTCTAGTGCCATGGATTCTTCTTTCTTGTTCCGCTTCTCTTTGAGTTGC
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consensus TTCGTAATGTTCTCTAGTGCCATGGATTCTTCTTTCTTGTTCCGCTTCTCTTTGAGTTGC

. : . : . : . : . : . :
rJMSF045N15+ TAGACTTCACCGACTTAGATTTCTTTGTTTTCCCACGGATCCTGTTCTTTGGGGGCTTTA
rJMSF001M06+ TAGACTTCACCGACTTANATTTCTTTGTTTTCCCACGGATCCTGTTCTTTGGGGGCTTTA
rJMSF037J14+ TAGACTTCACCGACTTAGATTTCTTTGTTTTCCCACGGATCCTGTTCTTTGGGGGCTTTA
rJMSF007G06+ TAGACTTCACCGACTTAGATTTCTTTGTTTTCCCACGGATCCTGTTCTTTGGGGGCTTTA
rJMSF004K05+ TAGACTTCACCGACTTAGATTTCTTTGTTTTCCCACGGATCCTGTTCTTTGGGGGCTTTA
rJMSF029C19+ TAGACTTCACCGACTTAGATTTCTTTGTTTTCCCACGGATCCTGTTCTTTGGGGGCTTTA
rJMSF032K05+ TAGACTTCACCGACTTAGATTTCTTTGTTTTCCCACGGATCCTGTTCTTTGGGGGCTTTA
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consensus TAGACTTCACCGACTTAGATTTCTTTGTTTTCCCACGGATCCTGTTCTTTGGGGGCTTTA

. : . : . : . : . : . :
rJMSF045N15+ GTTTGTATATCCGGACCATCCAATGGTGTGTGGTGAATACCTCCTCAAAGTGAGTGAGCT
rJMSF001M06+ GTTTGTATATCCGGACCATCCANTGGTGTGTGGTGAATACCTCCTCAAAGTGAGTGAGCT
rJMSF037J14+ GTTTGTATATCCGGACCATCCAATGGTGTGTGGTGAATACCTCCTCAAAGTGAGTGAGCT
rJMSF007G06+ GTTTGTATATCCGGACCATCCAATGGTGTGTGGTGAATACCTCCTCAAAGTGAGTGAGCT
rJMSF004K05+ GTTTGTATATCCGGACCATCCAATGGTGTGTGGTGAATACCTCCTCAAAGTGAGTGAGCT
rJMSF029C19+ GTTTGTATATCCGGACCATCCAATGGTGTGTGGTGAATACCTCCTCAAAGTGAGTGAGCT
rJMSF032K05+ GTTTGTATATCCGGACCATCCAATGGTGTGTGGTGAATACCTCCTCAAAGTGAGTGAGCT
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consensus GTTTGTATATCCGGACCATCCAATGGTGTGTGGTGAATACCTCCTCAAAGTGAGTGAGCT

. : . : . : . : . : . :
rJMSF045N15+ TAAAAACTTTCTTTCCAATTTCAGTCCGCCTAACTCTATCAAAACCCTTGCCGCCATCTG
rJMSF001M06+ TAAAAACTTTCTTTCCAATTTCAGTCCGCCTAACTCTATCAAAACCCTTGCCGCCATCTG
rJMSF037J14+ TAAAAACTTTCTTTCCAATTTCAGTCCGCCTAACTCTATCAAAACCCTTGCCGCCATCTG
rJMSF007G06+ TAAAAACTTTCTTTCCAATTTCAGTCCGCCTAACTCTATCAAAACCCTTGCCGCCATCTG
rJMSF004K05+ TAAAAACTTTCTTTCCAATTTCAGTCCGCCTAACTCTATCAAAACCCTTGCCGCCATCTG
rJMSF029C19+ TAAAAACTTTCTTTCCAATTTCAGTCCGCCTAACTCTATCAAAACCCTTGCCGCCATCTG
rJMSF032K05+ TAAAAACTTTCTTTCCAATTTCAGTCCGCCTAACTCTATCAAAACCCTTGCCGCCATCTG
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consensus TAAAAACTTTCTTTCCAATTTCAGTCCGCCTAACTCTATCAAAACCCTTGCCGCCATCTG

. : . : . : . : . : . :
rJMSF045N15+ TCTCCACAAATCTGTAATATGACAGCTTGTACATGAGAGAGTTTAGCATAGTTGGAGTGG
rJMSF001M06+ TCTCCACAAATCTGTAATATGACAGCTTGTACATGAGAGAGTTTAGCATAGTTGGAGTGG
rJMSF037J14+ TCTCCACAAATCTGTAATATGACAGCTTGTACATGAGAGAGTTTAGCATAGTTGGAGTGG
rJMSF007G06+ TCTCCACAAATCTGTAATATGACAGCTTGTACATGAGAGAGTTTAGCATAGTTGGAGTGG
rJMSF004K05+ TCTCCACAAATCTGTAATATGACAGCTTGTACATGAGAGAG
rJMSF029C19+ TCTCCACAAATCTGTAATATGACAGCTTGTACATGAGAGAGTTTAGCATAGTTGGAGTGG
rJMSF032K05+ TCTCCACAAATCTGTAATATGACAGCTTGTACATGAGAGAGTTTAGCATAGTTGGAGTGG
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consensus TCTCCACAAATCTGTAATATGACAGCTTGTACATGAGAGAGTTTAGCATAGTTGGAGTGG

. : . : . : . : . : . :
rJMSF045N15+ CTTGAGAATCAATGCGGTACTGACCATCCCTCAGATAATCAGGTTCCTTGATGTGAGGAA
rJMSF001M06+ CTTGAGAATCAATGCGGTACTGACCATCCCTCAGATAATCAGGTTCCTTGATGTGAGGAA
rJMSF037J14+ CTTGAGAATCAATGCGGTACTGACCATCCCTCAGATAATCAGGTTCCTTGATGTGAGGAA
rJMSF007G06+ CTTGAGAATCAATGCGGTACTGACCATCCCTCAGATAATCAGGTTCCTTGATGTGAGGAA
rJMSF029C19+ CTTGAGAATCAATGCGGTACTGACCATCCCTCAGATAATCAGGTTCCTTGATGTGAGGAA
rJMSF032K05+ CTTGAGAATCAATGCGGTACTGACCATCCCTCAGATAATCAGGTTCCTTGATGTGAGGAA
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consensus CTTGAGAATCAATGCGGTACTGACCATCCCTCAGATAATCAGGTTCCTTGATGTGAGGAA

. : . : . : . : . : . :
rJMSF045N15+ ATACCCCTCCTCCAATTCGAACCATCCATAGGAACTTGTTGATATCATCACTGGGGTACC
rJMSF001M06+ ATACCCCTCCTCCAATTCGAACCATCCATAGGAACTTGTTGATATCATCACTGGGGTACC
rJMSF037J14+ ATACCCCTCCTCCAATTCGAACCATCCATAGGAACTTGTTGATATCATCACTGGGGTACC
rJMSF007G06+ ATACCCCTCCTCCAATTCGAACCATCCATAGGAACTTGTTGATATCATCACTGGGGTACC
rJMSF029C19+ ATACCCCTCCTCCAATTCGAACCATCCATAGGAACTTGTTGATATCATCACTGGGGTACC
rJMSF032K05+ ATACCCCTCCTCCAATTCGAACCATCCATAGGAACTTGTTGATATCATCACTGGGGTACC
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consensus ATACCCCTCCTCCAATTCGAACCATCCATAGGAACTTGTTGATATCATCACTGGGGTACC

. : . : . : . : . : . :
rJMSF045N15+ CAACAAGGCCTCCAAATACANCAAGAACATATTTGACATCCAAAGACTGGAA
rJMSF001M06+ CAACAAGGCCTCCAAATAC
rJMSF037J14+ CAACAAGGCCTCCNAATACAACAAGAACATATTTGACATCCAAAGACTGGAA
rJMSF007G06+ CAACAAGGCCTCCAAATACAACAAGAATATATTTGACATCCAAAGACTGGAATATATCCC
rJMSF029C19+ CAACAAGGCCTCCAAATACAACAAGAACATATTTGACATCCAAAGACTGGAATATATCCC
rJMSF032K05+ CAACAAGGCCTCCAAATACAACAAGAACATATTTGACATCCAAAGAC
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consensus CAACAAGGCCTCCAAATACAACAAGAACATATTTGACATCCAAAGACTGGAATATATCCC

. : . : . : . : . : . :
rJMSF007G06+ ATGCTGCCTTTTCAGGTGATGACATGGCTGTTCCCACAGTAGCAATGTGTGTGT
rJMSF029C19+ ATGCTGCCTTTTCAGGTGATGACATGGCTGTTCCCACAGTAGCAATGTGTGTGTTGTTCC
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consensus ATGCTGCCTTTTCAGGTGATGACATGGCTGTTCCCACAGTAGCAATGTGTGTGTTGTTCC

. : . : . : . : . : . :
rJMSF029C19+ AGGTGTTATTGTCAACAATAACAGTGCGATTTGCCATGGCAGTGGTTTGAT
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consensus AGGTGTTATTGTCAACAATAACAGTGCGATTTGCCATGGCAGTGGTTTGAT