Alignment Contig 4358

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF041L11+ TGTTGTTTCTTTTTACAAGAATTGTTGCTAAAAATTGATTGTTTTAACTTTATATTCAGA
rJMSF052J02+ AAAAATTGATNGTTTTANCTTTATATTCANA
____________________________________________________________
consensus TGTTGTTTCTTTTTACAAGAATTGTTGCTAAAAATTGATTGTTTTAACTTTATATTCAGA

. : . : . : . : . : . :
rJMSF041L11+ AACGACATTGGAGTAAAACAAAGCTTTGGNGGGTAGGTTTTAAATCGGGTACATTTGAAA
rJMSF052J02+ ANCGACATNGGAGTAAAACAAAGCTTNGGGGGGTAGGTTTTAAATCGGGTACATTTGAAA
____________________________________________________________
consensus AACGACATTGGAGTAAAACAAAGCTTTGGGGGGTAGGTTTTAAATCGGGTACATTTGAAA

. : . : . : . : . : . :
rJMSF041L11+ ATGCTACACGAGTTTCCTATGACCACTACCAC-----CGATGCTTATCCNGGCTTCTTGT
rJMSF052J02+ ANGCTACACGAGTTNCCNATGACCNCTACCACCTAANCNANGCTTANCCGGGCTTCTNGN
____________________________________________________________
consensus ATGCTACACGAGTTTCCTATGACCACTACCACCTAANCGATGCTTATCCGGGCTTCTTGT

. : . : . : . : . : . :
rJMSF041L11+ CCTCGNGTCTTTTGATGTAACGTATTAACTCCCTATGAACGTTGAACCGTTCATTGCAAC
rJMSF052J02+ CCNCGGGNCTTTNGANGTAACGNATNANCTCCCTATGAACGTTGAACCGTTCATNGCAAC
____________________________________________________________
consensus CCTCGGGTCTTTTGATGTAACGTATTAACTCCCTATGAACGTTGAACCGTTCATTGCAAC

. : . : . : . : . : . :
rJMSF041L11+ ATCCTGCTAACACACTAATTCTGAATAATAATATTCTTGATGTTTGTTTTTATTGGCAGT
rJMSF052J02+ ATCCNGCTAACACNCNAATTCNNAANAANAANATNCTNGANGTTNGTTTTNATNGGCAGT
____________________________________________________________
consensus ATCCTGCTAACACACTAATTCTGAATAATAATATTCTTGATGTTTGTTTTTATTGGCAGT

. : . : . : . : . : . :
rJMSF041L11+ TCCGNGTCAAAACTCACAACGACCTAGGGATGATGCGTTGAGGCCTGGGTTGAATCGACT
rJMSF052J02+ NCCGGGTCAAAACTCACAACGACCTAGGGATGATGCGTTGAGGCCNGGGTNGAANCNACT
rJMSF051J11+ CGTTGAGGCCTGGGTTGAATCGACT
rJMSF051N03+ CGTTGAGGCCTGGGTTGAATCGACT
rJMSF025M16+ CGTTGAGGCCTGGGTTGAATCGACT
____________________________________________________________
consensus TCCGGGTCAAAACTCACAACGACCTAGGGATGATGCGTTGAGGCCTGGGTTGAATCGACT

. : . : . : . : . : . :
rJMSF041L11+ CTCCCCTCTGCTGTCAAATTCGAGCCCAANAATAATCATAAAGGTGCTGCTGCTTCAATT
rJMSF052J02+ CNCCCCTCNGCNGTCAAATTCNAGCCCAAAAATAATCATAAAGG
rJMSF051J11+ CTCCCCTCTGCTGTCAAATTCGAGCCCAAGAATAATCATAAAGGTGCTGCTGCTTCAATT
rJMSF051N03+ CTCCCCTCTGCTGTCAAATTCGAGCCCAAGAATAATCATAAAGGTGCTGCTGCTTCAATT
rJMSF025M16+ CTCCCCTCTGCTGTCAAATTCGAGCCCAAGAATAATCATAAAGGTGCTGCTGCTTCAATT
____________________________________________________________
consensus CTCCCCTCTGCTGTCAAATTCGAGCCCAAGAATAATCATAAAGGTGCTGCTGCTTCAATT

. : . : . : . : . : . :
rJMSF041L11+ GNGCTTTGGCTGTTGTTGCCATGCCTCCTTANAACCATGATTACNGATCTTAATCTGTTC
rJMSF051J11+ GTGCTTTGGCTGTTGTTGCCATGCCTCCTTAGAACCATGATTACTGATCTTAATCTGTTC
rJMSF051N03+ GTGCTTTGGCTGTTGTTGCCATGCCTCCTTAGAACCATGATTACTGATCTTAATCTGTTC
rJMSF025M16+ GTGCTTTGGCTGTTGTTGCCATGCCTCCTTAGAACCATGATTACTGATCTTAATCTGTTC
____________________________________________________________
consensus GTGCTTTGGCTGTTGTTGCCATGCCTCCTTAGAACCATGATTACTGATCTTAATCTGTTC

. : . : . : . : . : . :
rJMSF041L11+ ACGAGTTGTATGATACNGTCCTGCCAGGATCCTGTGGGGTCGTTGAGAGCCCGAATGGAG
rJMSF051J11+ ACGAGTTGTATGATACTGTCCTGCCAGGATCCTGTGGGGTCGTTGAGAGCCCGAATGGAG
rJMSF051N03+ ACGAGTTGTATGATACTGTCCTGCCAGGATCCTGTGGGGTCGTTGAGAGCCCGAATGGAG
rJMSF025M16+ ACGAGTTGTATGATACTGTCCTGCCAGGATCCTGTGGGGTCGTTGAGAGCCCGAATGGAG
____________________________________________________________
consensus ACGAGTTGTATGATACTGTCCTGCCAGGATCCTGTGGGGTCGTTGAGAGCCCGAATGGAG

. : . : . : . : . : . :
rJMSF041L11+ TTCAAACAGACAAGAAGCGTGCCTCCTTCGTGTAAAAGCACTGTTAACCATAGGGGGAGA
rJMSF051J11+ TTCAAACAGACAAGAAGCGTGCCTCCTTCGTGTAAAAGCACTGTTAACCATAGGGGGAGA
rJMSF051N03+ TTCAAACAGACAAGAAGCGTGCCTCCTTCGTGTAAAAGCACTGTTAACCATAGGGGGAGA
rJMSF025M16+ TTCAAACAGACAAGAAGCGTGCCTCCTTCGTGTAAAAGCACTGTTAACCATAGGGGGAGA
____________________________________________________________
consensus TTCAAACAGACAAGAAGCGTGCCTCCTTCGTGTAAAAGCACTGTTAACCATAGGGGGAGA

. : . : . : . : . : . :
rJMSF041L11+ AATCCCAAAACTGATGTAAGAGAGGCAACAGCAATGCTAGAC
rJMSF051J11+ AATCCCAAAACTGATGTAAGAGAGGCAACAGCAATGCTAGACAAGGCAAGAGCCACATTT
rJMSF051N03+ AATCCCAAAACTGATGTAAGAGAGGCAACAGCAATGCTAGACAAGGCAAGAGCCACATTT
rJMSF025M16+ AATCCCAAAACTGATGTAAGAGAGGCAACAGCAATGCTAGACAAGGCAAGAGCCACATTT
____________________________________________________________
consensus AATCCCAAAACTGATGTAAGAGAGGCAACAGCAATGCTAGACAAGGCAAGAGCCACATTT

. : . : . : . : . : . :
rJMSF051J11+ TGTTTGATCAGTGATGTCGTTTGTCGAGCTTTGGCTACACAGAATGGGACACCAGAAATA
rJMSF051N03+ TGTTTGATCAGTGATGTCGTTTGTCGAGCTTTGGCTACACAGAATGGGACACCAGAAATA
rJMSF025M16+ TGTTTGATCAGTGATGTCGTTTGTCGAGCTTTGGCTACACAGAATGGGACACCAGAAATA
____________________________________________________________
consensus TGTTTGATCAGTGATGTCGTTTGTCGAGCTTTGGCTACACAGAATGGGACACCAGAAATA

. : . : . : . : . : . :
rJMSF051J11+ TTGTCTTGCAGCAGTAGGATGTCTGCAACAGCTATAGCAGCTGCACTCGCACGTTCAGCT
rJMSF051N03+ TTGTCTTGCAGCAGTAGGATGTCTGCAACAGCTATAGCAGCTGCACTCGCACGTTCAGCT
rJMSF025M16+ TTGTCTTGCAGCAGTAGGATGTCTGCAACAGCTATAGCAGCTGCACTCGCACGTTCAGCT
____________________________________________________________
consensus TTGTCTTGCAGCAGTAGGATGTCTGCAACAGCTATAGCAGCTGCACTCGCACGTTCAGCT

. : . : . : . : . : . :
rJMSF051J11+ AGTACTATGCCTACAGTAGCAGCAGCAAGTGCAGGGGCATCATTGATGCCATCACCAACC
rJMSF051N03+ AGTACTATGCCTACAGTAGCAGCAGCAAGTGCAGGGGCATCATTGATGCCATCACCAACC
rJMSF025M16+ AGTACTATGCCTACAGTAGCAGCAGCAAGTGCAGGGGCATCATTGATGCCATCACCAACC
____________________________________________________________
consensus AGTACTATGCCTACAGTAGCAGCAGCAAGTGCAGGGGCATCATTGATGCCATCACCAACC

. : . : . : . : . : . :
rJMSF051J11+ ATTATAAGCCCCCCTTTATCCCTTGAAATGCTTGTCACATGATA
rJMSF051N03+ ATTATAAGCCCCCCTTNATCCCTTGAAATGCTTGTCACATGATACAGCTTGTCTTC
rJMSF025M16+ ATTATAAGCCCCCCTTTATCCCTTGAAATGCTTGTCACATGATACAGCTTGTCTTCAGGC
____________________________________________________________
consensus ATTATAAGCCCCCCTTTATCCCTTGAAATGCTTGTCACATGATACAGCTTGTCTTCAGGC

. : . : . : . : . : . :
rJMSF025M16+ TTAAGGCTGCAGTGAACTTCTTTGATACCCACAGCTTTTGCAACTCTCAATGCACTTGCC
____________________________________________________________
consensus TTAAGGCTGCAGTGAACTTCTTTGATACCCACAGCTTTTGCAACTCTCAATGCACTTGCC

. : . : . : . : . : . :
rJMSF025M16+ TCATGGTCA
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consensus TCATGGTCA