Alignment Contig 4335

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF038I10+ CCCATTACATTAGAAACAGATTACTATAACTAAGTATTGGGCAATGGAAAATATCATTAC
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consensus CCCATTACATTAGAAACAGATTACTATAACTAAGTATTGGGCAATGGAAAATATCATTAC

. : . : . : . : . : . :
rJMSF038I10+ ACATGGCTGCCACAACTATTCAGGCTGCTATGAATGTCTCAATTGCAAAGAAAAGAAAGG
rJMSF034M05+ GGCTGCCACAACTATTCAGGCTGCTATGAATGTCTCAATTGCAAAGAAAAGAAAGG
rJMSF032I19+ TGCTATGAATGTCTCAATTGCAAAGAAAAGAAAGG
rJMSF047D06+ GGCTGCCACAACTATTCAGGCTGCTATGAATGTCTCAATTGCAAAGAAAAGAAAGG
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consensus ACATGGCTGCCACAACTATTCAGGCTGCTATGAATGTCTCAATTGCAAAGAAAAGAAAGG

. : . : . : . : . : . :
rJMSF038I10+ TGAAAAACAGACGAAACCTTACAACCTAACAAACCGAACCTGTATATACCAACCAAAAAA
rJMSF034M05+ TGAAAAACAGACGAAACCTTACAACCTAACAAACCGAACCTGTATATACCAACCAAAAAA
rJMSF032I19+ TGAAAAACAGACGAAACCTTACAACCTAACAAACCGAACCTGTATATACCAACCAAAAAA
rJMSF047D06+ TGAAAAACAGACGAAACCTTACAACCTAACAAACCGAACCTGTATATACCAACCAAAAAA
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consensus TGAAAAACAGACGAAACCTTACAACCTAACAAACCGAACCTGTATATACCAACCAAAAAA

. : . : . : . : . : . :
rJMSF038I10+ AGAAAAGCTGAACCACTTATAAGAAAAACATTCTTGGAAGCACTATCTAGAACAAGTAAC
rJMSF034M05+ AGAAAAGCTGAACCACTTATAAGAAAAACATTCTTGGAAGCACTATCTAGAACAAGTAAC
rJMSF032I19+ AGAAAAGCTGAACCACTTATAAGAAAAACATTCTTGGAAGCACTATCTAGAACAAGTAAC
rJMSF047D06+ AGAAAAGCTGAACCACTTATAAGAAAAACATTCTTGGAAGCACTATCTAGAACAAGTAAC
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consensus AGAAAAGCTGAACCACTTATAAGAAAAACATTCTTGGAAGCACTATCTAGAACAAGTAAC

. : . : . : . : . : . :
rJMSF038I10+ AAGTGTGGTTCCTTACATCTAGACAAAGAACAAAGTTCTACAAGTTGTGAACAAGACTCT
rJMSF034M05+ AAGTGTGGTTCCTTACATCTAGACNAAGAACAAAGTTCTACAAGTTGTGAACAAGACTCT
rJMSF032I19+ AAGTGTGGTTCCTTACATCTAGACAAAGAACAAAGTTCTACAAGTTGTGAACAAGACTCT
rJMSF047D06+ AAGTGTGGTTCCTTACATCTAGACAAAGAACAAAGTTCTACAAGTTGTGAACAAGACTCT
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consensus AAGTGTGGTTCCTTACATCTAGACAAAGAACAAAGTTCTACAAGTTGTGAACAAGACTCT

. : . : . : . : . : . :
rJMSF038I10+ GTTTCTGTTTAATCACACCATTTGCGTGTGACTTGCCAAGAGACTCGGTATTCAAGCTAG
rJMSF034M05+ GTTTCTGTTTAATCACACCATTTGCGTGTGACTTGCCAAGAGACTCGGTATTCAAGCTAG
rJMSF032I19+ GTTTCTGTTTAATCACACCATTTGCGTGTGACTTGCCAAGAGACTCGGTATTCAAGCTAG
rJMSF047D06+ GTTTCTGTTTAATCACACCATTTGCGTGTGACTTGCCAAGAGACTCGGTATTCAAGCTAG
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consensus GTTTCTGTTTAATCACACCATTTGCGTGTGACTTGCCAAGAGACTCGGTATTCAAGCTAG

. : . : . : . : . : . :
rJMSF038I10+ GAGCTTCTGTGTAGTATGAAACTTTACTTGGTTAACAAGTTCTGTGTAGAAGGAATTATC
rJMSF034M05+ GAGCTTCTGTGTAGTATGAAACTTTACTTGGTTAACAAGTTCTGTGTAGAAGGAATTATC
rJMSF032I19+ GAGCTTCTGTGTAGTATGAAACTTTACTTGGTTAACAAGTTCTGTGTAGAAGGAATTATC
rJMSF047D06+ GAGCTTCTGTGTAGTATGAAACTTTACTTGGTTAACAAGTTCTGTGTAGAAGGAATTATC
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consensus GAGCTTCTGTGTAGTATGAAACTTTACTTGGTTAACAAGTTCTGTGTAGAAGGAATTATC

. : . : . : . : . : . :
rJMSF038I10+ AATTGTCCCTCAATCTCAAGGGACCTTTTTTTTTCATTTTTTTTGTGAATTTGACAGACT
rJMSF034M05+ ANTTGTCCCTCAATCTCAAGGGACCTTTTTTTTTCATTTTTTTTGTGAATTTGACAGACT
rJMSF032I19+ AATTGTCCCTCAATCTCAAGGGACCTTTTTTTTTCATTTTTTTTGTGAATTTGACAGACT
rJMSF047D06+ AATTGTCCCTCAATCTCAAGGGACCTTTTTTTTTCATTTTTTTTGTGAATTTGACAGACT
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consensus AATTGTCCCTCAATCTCAAGGGACCTTTTTTTTTCATTTTTTTTGTGAATTTGACAGACT

. : . : . : . : . : . :
rJMSF038I10+ GAGTCATCTCCGGTCATCCCCTTGAAGATTTGGTGTGCACAATTTGCCATTTGATGTTCA
rJMSF034M05+ GAGTCATCTCCGGTCATCCCCTTGAAGATTTGGTGTGCACAATTTGCCATTTGATGTTCA
rJMSF032I19+ GAGTCATCTCCGGTCATCCCCTTGAAGATTTGGNGTGCACAATTTGCCATTTGATGTTCA
rJMSF047D06+ GAGTCATCTCCGGTCATCCCCTTGAAGATTTGGTGTGCACAATTTGCCATTTGATGTTCA
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consensus GAGTCATCTCCGGTCATCCCCTTGAAGATTTGGTGTGCACAATTTGCCATTTGATGTTCA

. : . : . : . : . : . :
rJMSF038I10+ ATAGCCAGGCCAAACATGATTCTGTATACCTTGTATCCAACAACAAAAAGTTAAAAGGGA
rJMSF034M05+ ATAGCCAGGCCAAACATGATTCTGTATACCTTGTATCCAACAACAAAAAGTTAAAAGGGA
rJMSF032I19+ ATAGCCAGGCCAAACATGATTCTGTATACCTTGTATCCAACAACAAAAAGTTAAAAGGGA
rJMSF047D06+ ATAGCCAGGCCAAACATGATTCTGTATACCTTGTATCCAACAACAAAAAGTTAAAAGGGA
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consensus ATAGCCAGGCCAAACATGATTCTGTATACCTTGTATCCAACAACAAAAAGTTAAAAGGGA

. : . : . : . : . : . :
rJMSF038I10+ GCTTCAAGTGATTCATCCCACATATCAGGACTTCCATTGGAGGCATCTTCAGCATCTTCC
rJMSF034M05+ GCTTCAAGTGATTCATCCCACATATCAGGACTTCCATTGGAGGCATCTTCAGCATCTTCC
rJMSF032I19+ GCTTCAAGTGATTCATCCCACATATCAGGACTTTCATTGGAGGCATCTTCAGCATCTTCC
rJMSF047D06+ GCTTCAAGTGATTCATCCCACATATCAGGACTTCCATTGGAGGCATCTTCAGCATCTTCC
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consensus GCTTCAAGTGATTCATCCCACATATCAGGACTTCCATTGGAGGCATCTTCAGCATCTTCC

. : . : . : . : . : . :
rJMSF038I10+ TCCATTGAAAGCCTAATATATTCTCTGTGTGCAAACCGATCCCACTCGGTCATATTTGGG
rJMSF034M05+ TCCATTGAAAGCCTAATATATTCTCTGTGTG
rJMSF032I19+ TCCATTGAAAGCCTAATATATTCTCTGTGTGCAAACCGATCCCACTCGGTCATATTTGGG
rJMSF047D06+ TCCATTGAAAGCCTAATATATTCTCTGTGTGCAAACCGATCCCACTCGGTCATATTTGGG
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consensus TCCATTGAAAGCCTAATATATTCTCTGTGTGCAAACCGATCCCACTCGGTCATATTTGGG

. : . : . : . : . : . :
rJMSF038I10+ TTCTCTCGCTCCTGACGAATCAGGAAAGGATCACGAGTTTCAAATGCCATGAATTTGTTG
rJMSF032I19+ TTCTCTCGCTCCTGACGAATCAGGAAAGGATCACGAGTTTCAAATGCCATGAATTTGTTG
rJMSF047D06+ TTCTCTCGCTCCTGACGAATCAGGAAAGGATCACGAGTTTCAAATGCCATGAATTTGTTG
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consensus TTCTCTCGCTCCTGACGAATCAGGAAAGGATCACGAGTTTCAAATGCCATGAATTTGTTG

. : . : . : . : . : . :
rJMSF038I10+ AGGTTAAAAAGAATGTTGAAAACACTGCCTGAAAGTTTGCTGCCCTTCAAGTCATGTAAC
rJMSF032I19+ AGGTTAAAAAGAATGTTGAAAACACTG
rJMSF047D06+ AGGTTAAAAAGAATGTTGAAAACACTGCCTGAAAGTTTGCTGCCCTTCA
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consensus AGGTTAAAAAGAATGTTGAAAACACTGCCTGAAAGTTTGCTGCCCTTCAAGTCATGTAAC

. : . : . : . : . : . :
rJMSF038I10+ GTAATAAAGCTGGCATTCTCTGGATTAATCATGTCAATCATTTGGCAC
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consensus GTAATAAAGCTGGCATTCTCTGGATTAATCATGTCAATCATTTGGCAC