Alignment Contig 4304

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF032J11+ AATTTTATCCTAATAACTGTCATAAATCTATGTATTATTTATATTACACAATTGAAAGGT
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consensus AATTTTATCCTAATAACTGTCATAAATCTATGTATTATTTATATTACACAATTGAAAGGT

. : . : . : . : . : . :
rJMSF032J11+ CAAAAGCAAGTATCTCTAGACTCTAATACTATGAGTCAATCTGCTTCTCACGCAGG-AGA
rJMSF037D24+ ACTCTAATACTATGAGTCAGTCTGCTTCTCACGCGGGCAGA
rJMFF019P18+ TATCTCNAGACTCTAATACTATGAGTCAATCTGCTTCTCACGCAGG-AGA
rJMSF020B24+ ACTCTAATACTATGAGTCAATCTGCTTCTCACGCAGG-AGA
rJMSF013M08+ ACTCTAATACTATGAGTCAATCTGCTTCTCACGCAGG-AGA
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consensus CAAAAGCAAGTATCTCTAGACTCTAATACTATGAGTCAATCTGCTTCTCACGCAGG-AGA

. : . : . : . : . : . :
rJMSF032J11+ AGAAAAACTACTTTATCCATGCTATAAAACCAAAATGCATACCACCTATTTATCCTTTTT
rJMSF037D24+ AGAAAAACTACTTTATCCATGCTATAAAACCAAAATGCATACCACCTATTTATCCTTTTT
rJMFF019P18+ AGAAAAACTACTTTATCCATGCTATAAAACCAAAATGCATACCACCTATTTATCCTTTTT
rJMSF020B24+ AGAAAAACTACTTTATCCATGCTATAAAACCAAAATGCATACCACCTATTTATCCTTTTT
rJMSF013M08+ AGAAAAACTACTTTATCCATGCTATAAAACCAAAATGCATACCACCTATTTATCCTTTTT
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consensus AGAAAAACTACTTTATCCATGCTATAAAACCAAAATGCATACCACCTATTTATCCTTTTT

. : . : . : . : . : . :
rJMSF032J11+ CTAATGTCAGGAAGTGCTCCAAAAACAGCCTTCAAATGATATACTTCAATGGCTTTGTTA
rJMSF037D24+ CTAATGTCAGGAAGTGCTCCAAAAACAGCCTTCNAATGATATACTTCAATGGCTTTGTTA
rJMFF019P18+ CTAATGTCAGGAAGTGCTCCAAAAACAGCCTTCAAATGATATACTTCAATGGCTTTGTTA
rJMSF020B24+ CTAATGTCAGGAAGTGCTCCAAAAACAGCCTTCAAATGATATACTTCAATGGCTTTGTTA
rJMSF013M08+ CTAATGTCAGGAAGTGCTCCAAAAACAGCCTTCAAATGATATACTTCAATGGCTTTGTTA
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consensus CTAATGTCAGGAAGTGCTCCAAAAACAGCCTTCAAATGATATACTTCAATGGCTTTGTTA

. : . : . : . : . : . :
rJMSF032J11+ TCACTACCTGTCTATTTAGCTCAAAGCTGCTGTGTTTCAAATCTTTCAAGAGAAATGCTG
rJMSF037D24+ TCACTACCTGTCTATTTAGCTCAAAGCTGCTGTGTTTCAAATCTTTCAAGAGAAATGCTG
rJMFF019P18+ TCACTACCTGTCTATTTAGCTCAAAGCTGCTGTGTTTCAAATCTTTCAAGAGAAATGCTG
rJMSF020B24+ TCACTACCTGTCTATTTAGCTCAAAGCTGCTGTGTTTCAAATCTTTCAAGAGAAATGCTG
rJMSF013M08+ TCACTACCTGTCTATTTAGCTCAAAGCTGCTGTGTTTCAAATCTTTCAAGAGAAATGCTG
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consensus TCACTACCTGTCTATTTAGCTCAAAGCTGCTGTGTTTCAAATCTTTCAAGAGAAATGCTG

. : . : . : . : . : . :
rJMSF032J11+ TTTAGTGTTTACTTGCCTGATGCGTGGATTAGCTTATCCCTGGCTGTACCATCGGGAAGA
rJMSF037D24+ TTTAGTGTTTACTTGCCTGATGCGTGGATTAGCTTATCCCTGGCTGTACCATCGGGAAGA
rJMFF019P18+ TTTAGTGTTTACTTGCCTGATGCGTGGATTAGCTTATCCCTGGCTGTACCATCGGGAAGA
rJMSF020B24+ TTTAGTGTTTACTTGCCTGATGCGTGGATTAGCTTATCCCTGGCTGTACCATCGGGAAGA
rJMSF013M08+ TTTAGTGTT-ACTTGCCTGATGCGTGGATTAGCTTATCCCTGGCTGTACCATCGGGAAGA
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consensus TTTAGTGTTTACTTGCCTGATGCGTGGATTAGCTTATCCCTGGCTGTACCATCGGGAAGA

. : . : . : . : . : . :
rJMSF032J11+ AAGACCACTTCTGGCAAGGACTGGAACCCTGACCGAGATCCTTCTCGTTGGCCCACCAGT
rJMSF037D24+ AAGACCACTTCTGGCAAGGACTGGAACCCTGACCGAGATCCTTCTCGTTGGCCCACCAGT
rJMFF019P18+ AAGACCACTTCTGGCAAGGACTGGAACCCTGACCGAGATCCTTCTCGTTGGCCCACCAGT
rJMSF020B24+ AAGACCACTTCTGGCAAGGACTGGAACCCTGACCGAGATCCTTCTCGTTGGCCCACCAGT
rJMSF013M08+ AAGACCACTTCTGGCAAGGACTGGAACCCTGACCGAGATCCTTCTCGTTGGCCCACCAGT
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consensus AAGACCACTTCTGGCAAGGACTGGAACCCTGACCGAGATCCTTCTCGTTGGCCCACCAGT

. : . : . : . : . : . :
rJMSF032J11+ CGGAGCCAGCAACACTAGGCTTGTCAGAGAGTTCATCGTTTATGTTGTCAAAAAAGTTGA
rJMSF037D24+ CGGAGCCAGCAACACTAGGCTTGTCAGAGAGTTCATCGTTTATGTTGTCAAAAAAGTTGA
rJMFF019P18+ CGGAGCCAGCAACACTAGGCTTGTCAGAGAGTTCATCGTTTATGTTGTCAAAAAAGTTGA
rJMSF020B24+ CGGAGCCAGCAACACTAGGCTTGTCAGAGAGTTCATCGTTTATGTTGTCAAAAAAGTTGA
rJMSF013M08+ CGGAGCCAGCAACACTAGGCTTGTCAGAGAGTTCATCGTTTATGTTGTCAAAAAAGTTGA
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consensus CGGAGCCAGCAACACTAGGCTTGTCAGAGAGTTCATCGTTTATGTTGTCAAAAAAGTTGA

. : . : . : . : . : . :
rJMSF032J11+ ATTCCTCTGAAGATCCGAGAGTGATAGACTGGTTCTGATGGTGCTGCTTTCTATCCTCTC
rJMSF037D24+ ATTCCTCTGAAGATCCGAGAGTGATAGACTGGTTCTGATGGTGCTGCTTTCTATCCTCTC
rJMFF019P18+ ATTCCTCTGAAGATCCGAGAGTGATAGACTGGTTCTGATGGTGCTGCTTTCTATCCTCTC
rJMSF020B24+ ATTCCTCTGAAGATCCGAGAGTGATAGACTGGTTCTGATGGTGCTGCTTTCTATCCTCTC
rJMSF013M08+ ATTCCTCTGAAGATCCGAGAGTGATAGACTGGTTCTGATGGTGCTGCTTTCTATCCTCTC
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consensus ATTCCTCTGAAGATCCGAGAGTGATAGACTGGTTCTGATGGTGCTGCTTTCTATCCTCTC

. : . : . : . : . : . :
rJMSF032J11+ CATTTGCAGAAGCCCTTTCGAAGCTTTCTCCTGAGGACTCGACTGCAAAACAATCGTGAC
rJMSF037D24+ CATTTGCAGAAGCCCTTTCGAAGCTTTCTCCTGAGGA
rJMFF019P18+ CATTTGCAGAAGCCCTTTCGAAGCTTTCTCCTGAGGACTCGACTGCAAAACAATCGTGAC
rJMSF020B24+ CATTTGCAGAAGCCCTTTCGAAGCTTTCTCCTGAGGACTCGACTGCAAAACAATCGTGAC
rJMSF013M08+ CATTTGCAGAAGCCCTTTCGAAGCTTTCTCCTGAGGACTCGACTGCAAAACAATCGTGAC
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consensus CATTTGCAGAAGCCCTTTCGAAGCTTTCTCCTGAGGACTCGACTGCAAAACAATCGTGAC

. : . : . : . : . : . :
rJMSF032J11+ CAATTTTCATTTCAGGAGTGCATCCTTGTCCTTTGGCAGTAGATTTCCCTTTCTCAAGAG
rJMFF019P18+ CAATTTTCATTTCAGGAGTGCATCCTTGTCCTTTGGCAGTAGATTTCCCTTTCTCAAGAG
rJMSF020B24+ CAATTTTCATTTCAGGAGTGCATCCTTGTCCTTTGGCAGTAGATTTCCCTTTCTCAAGAG
rJMSF013M08+ CAATTTTCATTTCAGGAGTGCATCCTTGTCCTTTGGCAGTAGATTTCCCTTTCTCAAGAG
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consensus CAATTTTCATTTCAGGAGTGCATCCTTGTCCTTTGGCAGTAGATTTCCCTTTCTCAAGAG

. : . : . : . : . : . :
rJMSF032J11+ GCGCAGCAAATCCAGCCTTGGACAACAATCCTGGCTTCTTTTCCATGCACCTGAGAAA
rJMFF019P18+ GCGCAGCAAATCCAGCCTTGGACAACAATCCTGGCTTCTTTTCCATGCACCTGAGAAA
rJMSF020B24+ GCGCAGCAAATCCAGCCTTGGACAACAATCCTGGCTTCTTTTCCATGCACCTGAGAAAAT
rJMSF013M08+ GCGCAGCAAATCCAGCCTTGGACAACAATCCTGGCTTCTTTTCCATGCACCTGAGAAAAT
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consensus GCGCAGCAAATCCAGCCTTGGACAACAATCCTGGCTTCTTTTCCATGCACCTGAGAAAAT

. : . : . : . : . : . :
rJMSF020B24+ CTTCTGCAGTAACCTCAAATGAAACTCTGTGATTAAGTACTGTGTCATCATTCTTCCACC
rJMSF013M08+ CTTCTGCAGTAACCTCAAATGAA-CTCTGTGATTAAGTACTGTG
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consensus CTTCTGCAGTAACCTCAAATGAAACTCTGTGATTAAGTACTGTGTCATCATTCTTCCACC

. : . : . : . : . : . :
rJMSF020B24+ TATTATATGAATTT
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consensus TATTATATGAATTT