Alignment Contig 4249

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF018O08+ TATTTCTTCCTCTCATCATACACAACTTCTGTGGTTCAGTACATAACATGAGTGATCTAC
rJMSF028G21+ CTCTCATCATACACAACTTCTGTGGTTCAGTACATAACATGAGTGATCTAC
rJMSF001J21+ ATAACATGAGTGATCTAC
____________________________________________________________
consensus TATTTCTTCCTCTCATCATACACAACTTCTGTGGTTCAGTACATAACATGAGTGATCTAC

. : . : . : . : . : . :
rJMSF018O08+ ACTGGATCCTAAGATTCAATTCATCCTGCTAACGATTTCGATTGCCATCTAGAGAATCGG
rJMSF028G21+ ACTGGATCCTAAGATTCAATTCATCCTGCTAACGATTTCGATTGCCATCTAGAGAATCGG
rJMSF001J21+ ACTGGATCCTAAGATTCAATTCATCCTGCTAACGATTTCGATTGCCATCTAGAGAATCGG
____________________________________________________________
consensus ACTGGATCCTAAGATTCAATTCATCCTGCTAACGATTTCGATTGCCATCTAGAGAATCGG

. : . : . : . : . : . :
rJMSF018O08+ CTAAAACATTTGTACAAAACAAACACGGACTAGTTAGTAACTGAACCTGTCATTGAGTTT
rJMSF028G21+ CTAAAACATTTGTACAAAACAAACACGGACTAGTTAGTAACTGAACCTGTCATTGAGTTT
rJMSF001J21+ CTAAAACATTTGTACAAAACAAACACGGACTAGTTAGTAACTGAACCTGTCATTGAGTTT
____________________________________________________________
consensus CTAAAACATTTGTACAAAACAAACACGGACTAGTTAGTAACTGAACCTGTCATTGAGTTT

. : . : . : . : . : . :
rJMSF018O08+ TTGACCCGTTCATCGATTCTGAATCAGATTTTTCTGTTTGCTCAATGACGAAATGATCAA
rJMSF028G21+ TTGACCCGTTCATCGATTCTGAATCAGATTTTTCTGTTTGCTCAATGACGAAATGATCAA
rJMSF001J21+ TTGACCCGTTCATCGATTCTGAATCAGATTTTTCTGTTTGCTCAATGACGAAATGATCAA
____________________________________________________________
consensus TTGACCCGTTCATCGATTCTGAATCAGATTTTTCTGTTTGCTCAATGACGAAATGATCAA

. : . : . : . : . : . :
rJMSF018O08+ CAACCCGAACAGTGTTTATAGGATCTTGTTGGAGTGACGTCGCTCTCCATTTGCTAGGGA
rJMSF028G21+ CAACCCGAACAGTGTTTATAGGATCTTGTTGGAGTGACGTCGCTCTCCATTTGCTAGGGA
rJMSF001J21+ CAACCCGAACAGTGTTTATAGGATCTTGTTGGAGTGACGTCGCTCTCCATTTGCTAGGGA
____________________________________________________________
consensus CAACCCGAACAGTGTTTATAGGATCTTGTTGGAGTGACGTCGCTCTCCATTTGCTAGGGA

. : . : . : . : . : . :
rJMSF018O08+ ATTTCCGCACATAGCTAGGCTGCTGTGGCTCCGTTTCCCAGTTTGAGTCTAGCTTCCACT
rJMSF004F14+ ATTTCCGCACATAGCTAGGCTGCTGTGGCTCCGNTTCCCAGTTTGAGTCTNGCTTCCACT
rJMSF028G21+ ATTTCCGCACATAGCTAGGCTGCTGTGGCTCCGTTTCCCAGTTTGAGTCTAGCTTCCACT
rJMSF001J21+ ATTTCCGCACATAGCTAGGCTGCTGTGGCTCCGTTTCCCAGTTTGAGTCTAGCTTCCACT
____________________________________________________________
consensus ATTTCCGCACATAGCTAGGCTGCTGTGGCTCCGTTTCCCAGTTTGAGTCTAGCTTCCACT

. : . : . : . : . : . :
rJMSF018O08+ CTTTCGGAACCTTATCAACTGCAAGTGTGAAAACTTCAAGGTCGCCTTTGGTGTTTATGT
rJMSF004F14+ CTTTCGGAACCTTATCAACTGCNAGNGTGAAAACTTCAAGG
rJMSF028G21+ CTTTCGGAACCTTATCAACTGCAAGTGTGAAAACTTCAAGGTCGCCTTTGGTGTTTATGT
rJMSF001J21+ CTTTCGGAACCTTATCAACTGCAAGTGTGAAAACTTCAAGGTCGCCTTTGGTGTTTATGT
____________________________________________________________
consensus CTTTCGGAACCTTATCAACTGCAAGTGTGAAAACTTCAAGGTCGCCTTTGGTGTTTATGT

. : . : . : . : . : . :
rJMSF018O08+ GGAATCGTGTAAATGACTTGTAGTTGGCAATACGGAGAGAAGAAAAGGCTTCATCAAAAT
rJMSF028G21+ GGAATCGTGTAAATGACTTGTAGTTGGCAATACGGAGAGAAGAAAAGGCTTCATCAAAAT
rJMSF001J21+ GGAATCGTGTAAATGACTTGTAGTTGGCAATACGGAGAGAAGAAAAGGCTTCATCAAAAT
____________________________________________________________
consensus GGAATCGTGTAAATGACTTGTAGTTGGCAATACGGAGAGAAGAAAAGGCTTCATCAAAAT

. : . : . : . : . : . :
rJMSF018O08+ GTACGTGGAGCCAATTAATACAGATATACAGATAACTTCCGAAGACCAGAGATACCACCG
rJMSF028G21+ GTACGTGGAGCCAATTAATACAGATATACAGATAACTTCCGAAGACCAGAGATACCACCG
rJMSF001J21+ GTACGTGGAGCCAATTAATACAGATATACAGATAACTTCCGAAGACCAGAGATACCACCG
____________________________________________________________
consensus GTACGTGGAGCCAATTAATACAGATATACAGATAACTTCCGAAGACCAGAGATACCACCG

. : . : . : . : . : . :
rJMSF018O08+ GAGTTGAGAAAACCCAGAAATAAAGAAAAACGGATGTATAATATATCACAGCACCCCCTC
rJMSF028G21+ GAGTTGAGAAAACCCAGAAATAAAGAAAAACGGATGTATAATATATCACAGCACCCCCTC
rJMSF001J21+ GAGTTGAGAAAACCCAGAAATAAAGAAAAACGGATGTATAATATATCACAGCACCCCCTC
____________________________________________________________
consensus GAGTTGAGAAAACCCAGAAATAAAGAAAAACGGATGTATAATATATCACAGCACCCCCTC

. : . : . : . : . : . :
rJMSF018O08+ GGGAGAGTGAATCCATCCCATTCTTGCAGATGTTTTGCCTCGTCACTGCCATTACCTCGG
rJMSF028G21+ GGGAGAGTGAATCCATCCCATTCTTGCAGATGTTTTGCCTCGTCACTGCCATTACCTCGG
rJMSF001J21+ GGGAGAGTGAATCCATCCCATTCTTGCAGATGTTTTGCCTCGTCACTGCCATTACCTCGG
____________________________________________________________
consensus GGGAGAGTGAATCCATCCCATTCTTGCAGATGTTTTGCCTCGTCACTGCCATTACCTCGG

. : . : . : . : . : . :
rJMSF018O08+ GTACATCAAAGGCAGACATTAGATACTTGATACATGCTGGATAAAGGCCAAATGTCC-AT
rJMSF028G21+ GTACATCAAAAGCAGACATTAGATACTTGATACATGCTGGATAAAGGCCAAATGTCCCAT
rJMSF001J21+ GTACATCAAAAGCAGACATTAGATACTTGATACATGCTGGATAAAGGCCAAATGTCC-AT
____________________________________________________________
consensus GTACATCAAAAGCAGACATTAGATACTTGATACATGCTGGATAAAGGCCAAATGTCC-AT

. : . : . : . : . : . :
rJMSF018O08+ CGTTCTATACGTGCCCTAA
rJMSF028G21+ CGTTCTATACGTGCCCTAA
rJMSF001J21+ CGTTCTATACGTGCCCTAAGACCAGTGGGGTCCGGAAAATGCTCGTTCTCANCATAGCGA
____________________________________________________________
consensus CGTTCTATACGTGCCCTAAGACCAGTGGGGTCCGGAAAATGCTCGTTCTCANCATAGCGA

. : . : . : . : . : . :
rJMSF001J21+ TACCATTCGTATAAGTATGAT
____________________________________________________________
consensus TACCATTCGTATAAGTATGAT