Alignment Contig 4187

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF006F08+ TCAACTTTGTACACTCATAATTTACAGGTCAGCAACTAACAATATGCAAGCTCAAATGCT
rJMSF006D06+ GGTCAGCAACTAACAATATGCAAGCTCAAATGCT
rJMSF043O04+ CAGCAACTAACAATATGCAAGCTCAAATGCT
rJMFF042H16+ CAGCAACTAACAATATGCAAGCTCAAATGGT
rJMSF037P24+ TAACAATATGCAAGCTCAAATGCT
rJMFF043J21+ ACAATATGCAAGCTCAAATGCT
rJMFF023P03+ AATGCT
____________________________________________________________
consensus TCAACTTTGTACACTCATAATTTACAGGTCAGCAACTAACAATATGCAAGCTCAAATGCT

. : . : . : . : . : . :
rJMSF006F08+ CATTGACTTACCAGGTTACCAGTTNAAGCCACATAGCATGATATGGAACAG-TTTAATAA
rJMSF006D06+ CATTGACTTACCAG-TTACCAGTTAAAGCCACATAGCANGATNTGGAACAG-TTGANTAA
rJMSF043O04+ CATTGACTTACCAGNTTACCAGTTAAAGCCACATAGCATGATATGGAACAG-TTTAATAA
rJMFF042H16+ CCTTGACTTACCAG-TTACCAATTAAAGCCCCATAACATGATATGGAACAG-TTTAATAA
rJMSF037P24+ CATTGACTTACCAG-TTACCAGTTAAAGCCACATAGCATGATATGGAACAGNTTTAATAA
rJMFF043J21+ CATTGACTTACCAG-TTACCAGTTAAAGCCACATAGCATGATATGGAACAG-TTTAATAA
rJMFF023P03+ CATTGACTTACCAG-TTACCAGTTAAAGCCACATAGCATGATATGGAACAG-TTTAATAA
rJMFF020M19+ TTGACTTACCAG-TTACCAGTTAAAGCCACATAGCATGATATGGAACAG-TTTAATAA
rJMSF036J20+ AGTTACCAGTTAAAGCCACATAGCATGATATGGAACAG-TTTAATAA
____________________________________________________________
consensus CATTGACTTACCAG-TTACCAGTTAAAGCCACATAGCATGATATGGAACAG-TTTAATAA

. : . : . : . : . : . :
rJMSF006F08+ ACAATACAATAACACTTTACTGGGGGTCAGTGAATGCAATCGCAAAAGTAAGGTACTTGG
rJMSF006D06+ NCAATACAATAACACTTTACTGGGGGTCAGTGAATGCAATCGCAAAAGTAAGGTACTTGG
rJMSF043O04+ ACAATACAATAACACTTTACTGGGGGTCAGTGAATGCAATCGCAAAAGTAAGGTACTTGG
rJMFF042H16+ ACAATACCATAACACTTTACTGGAGGGCAGGGAATGCAATCCCAAAAATAAGGGACTTGG
rJMSF037P24+ ACAATACAATAACACTTTACTGGGGGTCAGTGAATGCAATCGCAAAAGTAAGGTACTTGG
rJMFF043J21+ ACAATACAATAACACTTTACTGGGGGTCAGTGAATGCAATCGCAAAAGTAAGGTACTTGG
rJMFF023P03+ ACAATACAATAACACTTTACTGGGGGTCAGTGAATGCAATCGCAAAAGTAAGGTACTTGG
rJMFF020M19+ ACAATACAATAACACTTTACTGGGGGTCAGTGAATGCAATCGCAAAAGTAAGGTACTTGG
rJMSF036J20+ ACAATACAATAACACTTTACTGGGGGTCAGTGAATGCAATCGCAAAAGTAAGGTACTTGG
____________________________________________________________
consensus ACAATACAATAACACTTTACTGGGGGTCAGTGAATGCAATCGCAAAAGTAAGGTACTTGG

. : . : . : . : . : . :
rJMSF006F08+ GAAGGCACAGTTATTTAAGCTTGGAAGCAGGATAATGCCTATGTTTACTTGATTCCACCC
rJMSF006D06+ GAAGGCACAGTTATTTAAGCTTGGAAGCAGGATAATGCCTATGTTTACTTGATTCCACCC
rJMSF043O04+ GAAGGCACAGTTATTTAAGCTTGGAAGCAGGATAATGCCTATGTTTACTTGATTCCACCC
rJMFF042H16+ GAAAGCCCCGTTATTTAAACTTGGAAACAGGAAAAAGCCCATGTTTACTTGATTCCCCCC
rJMSF037P24+ GAAGGNACAGTTATTTAAGCTTGGAAGCAGGATAATGCCTATGTTTACTTGATTCCACCC
rJMFF043J21+ GAAGGCACAGTTATTTAAGCTTGGAAGCAGGATAATGCCTATGTTTACTTGATTCCACCC
rJMFF023P03+ GAAGGCACAGTTATTTAAGCTTGGAAGCAGGATAATGCCTATGTTTACTTGATTCCACCC
rJMFF020M19+ GAAGGCACAGTTATTTAAGCTTGGAAGCAGGATAATGCCTATGTTTACTTGATTCCACCC
rJMSF036J20+ GAAGGCACAGTTATTTAAGCTTGGAAGCAGGATAATGCCTATGTTTACTTGATTCCACCC
____________________________________________________________
consensus GAAGGCACAGTTATTTAAGCTTGGAAGCAGGATAATGCCTATGTTTACTTGATTCCACCC

. : . : . : . : . : . :
rJMSF006F08+ TGAAATATTAACTGCATCTACCATAGAGATCAATACTGCCAATTTGGAACCGCGGATTTT
rJMSF006D06+ TGAAATATTAACTGCATCTACCATAGAGATCAATACTGCCAATTTGGAACCGCGGATTTT
rJMSF043O04+ TGAAATATTAACTGCATCTACCATAGAGATCAATACTGCCAATTTGGAACCGCGGATTTT
rJMFF042H16+ CGAAATATTAACTGCCTCTACCATAAAAAACAATACCGCCAATTTGGAACCCCGGATTTT
rJMSF037P24+ TGAAATATTAACTGCATCTACCATAGAGATCAATACTGCCAATTTGGAACCGCGGATTTT
rJMFF043J21+ TAAAATATTAACTGCATCTACCATAGAGATCAATACTGCCAATTTGGAACCGCGGATTTT
rJMFF023P03+ TGAAATATTAACTGCATCTACCATAGAGATCAATACTGCCAATTTGGAACCGCGGATTTT
rJMFF020M19+ TGAAATATTAACTGCATCTACCATAGAGATCAATACTGCCAATTTGGAACCGCGGATTTT
rJMSF036J20+ TGAAATATTAACTGCATCTACCATAGAGATCAATACTGCCAATTTGGAACCGCGGATTTT
____________________________________________________________
consensus TGAAATATTAACTGCATCTACCATAGAGATCAATACTGCCAATTTGGAACCGCGGATTTT

. : . : . : . : . : . :
rJMSF006F08+ CCTTCCCATCTTGAACTGCTAGAAATCTTATCCTGAAAGCATTTGCTAGGAAACTTTGTG
rJMSF006D06+ CCTTCCCATCTTGAACTGCTAGAAATCTTATCCTGAAAGCATTTGCTAGGAAACTTTGTG
rJMSF043O04+ CCTTCCCATCTTGAACTGCTAGAAATCTTATCCTGAAAGCATTTGCTAGGAAACTTTGTG
rJMFF042H16+ CCCACCCCTCTTGAACTGCTAAAAAACTTATCCCGAAAACATTTGCTAAGAAACTTTGTG
rJMSF037P24+ CCTTCCCATCTTGAACTGCTAGAAATCTTATCCTGAAAGCATTTGCTAGGAAACTTTGTG
rJMFF043J21+ CCTTCCCATCTTGAACTGCTAGAAATCTTATCCTGAAAGCATTTGCTAGGAAACTTTGTG
rJMFF023P03+ CCTTCCCATCTTGAACTGCTAGAAATCTTATCCTGAAAGCATTTGCTAGGAAACTTTGTG
rJMFF020M19+ CCTTCCCATCTTGAACTGCTAGAAATCTTATCCTGAAAGCATTTGCTAGGAAACTTTGTG
rJMSF036J20+ CCTTCCCATCTTGAACTGCTAGAAATCTTATCCTGAAAGCATTTGCTAGGAAACTTTGTG
____________________________________________________________
consensus CCTTCCCATCTTGAACTGCTAGAAATCTTATCCTGAAAGCATTTGCTAGGAAACTTTGTG

. : . : . : . : . : . :
rJMSF006F08+ ATTTGACAGTATATGTTTTCCGCTGGAAACGCTTATCAAATATCTGGNTAGNTTGTTTGT
rJMSF006D06+ ATTTGACAGTATATGTTTTCCGCTGNAAACNCTTATCAAATATCTGGNTAGTTT
rJMSF043O04+ ATTTGACAGTATATGTTTTCCGCTGGAAACGCTTATCAAATATCTGGTTAGTTTGTTTGT
rJMFF042H16+ ATTTGACAGTATATGTTTTCCGCTGGAAACCCTTATCAAAAATCTGGGTAATTTGTTTGT
rJMSF037P24+ ATTTGACAGTATATGTTTTCCGCTGGAAACGCTTATCAAATATCTGGTTAGTTTGTTTGT
rJMFF043J21+ ATTTGACAGTATATGTTTTCCGCTGGAAACGCTTATCAAATATCTGGTTAGTTTGTTTGT
rJMFF023P03+ ATTTGACAGTATATGTTTTCCGCTGGAAACGCTTATCAAATATCTGGTTAGTTTGTTTGT
rJMFF020M19+ ATTTGACAGTATATGTTTTCCGCTGGAAACGCTTATCAAATATCTGGTTAGTTTGTTTGT
rJMSF036J20+ ATTTGACAGTATATGTTTTCCGCTGGAAACGCTTATCAAATATCTGGTTAGTTTGTTTGT
____________________________________________________________
consensus ATTTGACAGTATATGTTTTCCGCTGGAAACGCTTATCAAATATCTGGTTAGTTTGTTTGT

. : . : . : . : . : . :
rJMSF006F08+ CTAAAACATGCCAGCTAGAGCCTCCATTTGTGC
rJMSF043O04+ CTAAAACATGCCAGCTAGAGCCTCCATTTGTGCTTCCTTCAACAACCCAGTCCTTTGGAT
rJMFF042H16+ CTAAAACATGCCAACTAAAAGCTCCATTTGGGCTTCCTTCAAAAAACCAATCCTTTGGAT
rJMSF037P24+ CTAAAACATGCCAGCTAGAGCCTCCATTTGTGCTTCCTTCAACAACCCAGTCCTTTGGAT
rJMFF043J21+ CTAAAACATGCCAGCTAGAGCCTCCATTTGTGCTTCCTTCAACAACCCAGTCCTTTGGAT
rJMFF023P03+ CTAAAACATGCCAGCTAGAGCCTCCATTTGTGCTTCCTTCAACAACCCAGTCCTTTGGAT
rJMFF020M19+ CTAAAACATGCCAGCTAGAGCCTCCATTTGTGCTTCCTTCAACAACCCAGTCCTTTGGAT
rJMSF036J20+ CTAAAACATGCCAGCTAGAGCCTCCATTTGTGCTTCCTTCAACAACCCAGTCCTTTGGAT
____________________________________________________________
consensus CTAAAACATGCCAGCTAGAGCCTCCATTTGTGCTTCCTTCAACAACCCAGTCCTTTGGAT

. : . : . : . : . : . :
rJMSF043O04+ CTCTTTCTGGAACATCATTAGCTGACATGAATTCATATGCCACAAGCTCATGCATTTGTT
rJMFF042H16+ CTCTTTCTGGAA
rJMSF037P24+ CTCTTTCTGGAACATCATTAGCTGACNTGAATTCATATGCCACAAGCTCATGC
rJMFF043J21+ CTCTTTCTGGAACATCATTAGCTGACATGAATTCATATGCCACAAGCTCATGCATTTGTT
rJMFF023P03+ CTCTTTCTGGAACATCATTAGCTGACATGAATTCATATGCCACAAGCTCATGCATTTGTT
rJMFF020M19+ CTCTTTCTGGAACATCATTAGCTGACATGAATTCATATGCCACAAGCTCATGCATTTGTT
rJMSF036J20+ CTCTTTCTGGAACATCATTAGCTGACATGAATTCATATGCCACAAGCTCATGCATTTGTT
____________________________________________________________
consensus CTCTTTCTGGAACATCATTAGCTGACATGAATTCATATGCCACAAGCTCATGCATTTGTT

. : . : . : . : . : . :
rJMSF043O04+ CACCATTAACTTGATATAAGATCCAACAACCTTTTGCCCCATTTGGTTCTTCCCACTTTG
rJMFF043J21+ CACCATTAACTTGATATAAGATCCAACAACCTTTTGCCCCATTTGGTTCTTCCCACTTTG
rJMFF023P03+ CACCATTAACTTGATATAAGATCCAACAACCTTTTGCCCCATTTGGTTCTTCCCACTTTG
rJMFF020M19+ CACCATTAACTTGATATAAGATCCAACAACCTTTTGCCCCATTTGGTTCTTCCCACTTTG
rJMSF036J20+ CACCATTAACTTGATATAAGATCCAACAACCTTTTGCCCCATTTGGTTCTTCCCACTTTG
____________________________________________________________
consensus CACCATTAACTTGATATAAGATCCAACAACCTTTTGCCCCATTTGGTTCTTCCCACTTTG

. : . : . : . : . : . :
rJMSF043O04+ ACATCCGTGTTCCATCAAATGCAGATGTTGCAATTCCNAAAGGAAGCTCCTCCC-ACTAG
rJMFF043J21+ ACATCCGTGTTCCATCAAATGCAGATGTTGCAATTCCAAAAGGA
rJMFF023P03+ ACATCCGTGTTCCATCAAATGCAGATGTTGCAATTCCAAAAGGAAGCTCCTCCCCACTAG
rJMFF020M19+ ACATCCGTGTTCCATCAAATGCAGATGTTGCAATTCCAAAAGGAAGCTCCTCCCCACTAG
rJMSF036J20+ ACATCCGTGTTCCATCAAATGCAGATGTTGCAATTCCAAAAGGAAGCTCCTCCCCACTAG
____________________________________________________________
consensus ACATCCGTGTTCCATCAAATGCAGATGTTGCAATTCCAAAAGGAAGCTCCTCCCCACTAG

. : . : . : . : . : . :
rJMSF043O04+ CTCGCACTAGGCCAGAACATAATCTGTTCAACTTCAAA
rJMFF023P03+ CTCGCACTAGGCCAGAACATAATCTGTTCAACTTCAAAAGTGGCCAAGCAAGTGAATCTT
rJMFF020M19+ CTCGCACTAGGCCAGAACATAATCTGTTCAACTTCAAAAGTGGCCAAGCAAGTGAATCTT
rJMSF036J20+ CTCGCACTAGGCCAGAACATAATCTGTTCAACTTCAAAAGTGGCCAAGCAAGTGAATCTT
____________________________________________________________
consensus CTCGCACTAGGCCAGAACATAATCTGTTCAACTTCAAAAGTGGCCAAGCAAGTGAATCTT

. : . : . : . : . : . :
rJMFF023P03+ TATCAAGTTTATTACATTGACTAACATTATAGATCACATCATCCAAAGCATGGAA
rJMFF020M19+ TATCAAGTTTATTACATTGACTAACATTATAGATCACATCATCCAAAGCATGGAA
rJMSF036J20+ TATCAAGTTTATTACATTGACTAACATTATAGATCACATCATCCAAAGCATGGAACACGA
____________________________________________________________
consensus TATCAAGTTTATTACATTGACTAACATTATAGATCACATCATCCAAAGCATGGAACACGA

. : . : . : . : . : . :
rJMSF036J20+ CAGGCAGTGCAACGGCGGTTCTCACAGGATCGGCAGCTAAGCATATGTCAATCCTACCAC
____________________________________________________________
consensus CAGGCAGTGCAACGGCGGTTCTCACAGGATCGGCAGCTAAGCATATGTCAATCCTACCAC

. : . : . : . : . : . :
rJMSF036J20+ TTATGCCCCAA
____________________________________________________________
consensus TTATGCCCCAA