Alignment Contig 4173

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF051D15+ CCTTATGGCGGATCACCCTGGAGAGTTTTTTTTTTTTTTTTGGTGAGACATGTGAACACA
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consensus CCTTATGGCGGATCACCCTGGAGAGTTTTTTTTTTTTTTTTGGTGAGACATGTGAACACA

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rJMFF051D15+ GTTAATGATGTCTCCATGTAGGCTCTGTTACGTTTACATTGCTATAACTTATTCATTTTA
rJMSF022M10+ ATGATGTCTCCATGTAGGCTCTGTTACGTTTACATTGCTATAACTTATTCATTTTA
rJMFF025I19+ ATGATGTCTCCATGTAGGCTCTGTTACGTTTACATTGCTATAACTTATTCATTTTA
rJMSF004L01+ TATAACTTATTCATTTTA
rJMSF037J20+ ACTTATTCATTTTA
rJMSF041N24+ ACTTATTCATTTTA
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consensus GTTAATGATGTCTCCATGTAGGCTCTGTTACGTTTACATTGCTATAACTTATTCATTTTA

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rJMFF051D15+ CTATAACAAGTACAGGTTTTAACAGAAGTAATAATATAATACAGTAAAATAGGTTTTATT
rJMSF022M10+ CTATAACAAGTACAGGTTTTAACAGAAGTAATAATATAATACAGTAAAATAGGTTTTATT
rJMFF025I19+ CTATAACAAGTACAGGTTTTAACAGAAGTAATAATATAATACAGTAAAATAGGTTTTATT
rJMSF004L01+ CTATAACAAGTACAGGTTTTAACAGAAGTAATAATATAATACAGTANAATAGGTTTTATT
rJMSF037J20+ CTATAACAAGTACAGGTTTTAACAGAAGTAATAATATAATACAGTAAAATAGGTTTTATT
rJMSF041N24+ CTATAACAAGTACAGGTTTTAACAGAAGTAATAATATAATACAGTAAAATAGGTTTTATT
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consensus CTATAACAAGTACAGGTTTTAACAGAAGTAATAATATAATACAGTAAAATAGGTTTTATT

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rJMFF051D15+ TGATGATGATGATGATGATGACAAGCTGCAGGAATATGATGAGGGATGAACAATTTTTCT
rJMSF022M10+ TGATGATGATGATGATGATGACAAGCTGCAGGAATATGATGAGGGATGAACAATTTTTCT
rJMFF025I19+ TGATGATGATGATGATGATGACAAGCTGCAGGAATATGATGAGGGATGAACAATTTTTCT
rJMSF004L01+ TGATGATGATGATGATGATGACAAGCTGCAGGAATATGATGAGGGATGAACAATTTTTCT
rJMSF037J20+ TGATGATGATGATGATGATGACAAGCTGCAGGAATATGATGAGGGATGAACAATTTTTCT
rJMSF041N24+ TGATGATGATGATGATGATGACAAGCTGCAGGAATATGATGAGGGATGAACAATTTTTCT
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consensus TGATGATGATGATGATGATGACAAGCTGCAGGAATATGATGAGGGATGAACAATTTTTCT

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rJMFF051D15+ GCATCTTATTTGCTGAAGTTCTAGAACCATGGATGTCAACCACTTCAATTTTCCAGTATA
rJMSF022M10+ GCATCTTATTTGCTGAAGTTCTAGAACCATGGATGTCAACCACTTCAATTTTCCAGTATA
rJMFF025I19+ GCATCTTATTTGCTGAAGTTCTAGAACCATGGATGTCAACCACTTCAATTTTCCAGTATA
rJMSF004L01+ GCATCTTATTTGCTGAAGTTCTAGAACCATGGATGTCAACCACTTCAATTTTCCAGTATA
rJMSF037J20+ GCATCTTATTTGCTGAAGTTCTAGAACCATGGATGTCAACCACTTCAATTTTCCAGTATA
rJMSF041N24+ GCATCTTATTTGCTGAAGTTCTAGAACCATGGATGTCAACCACTTCAATTTTCCAGTATA
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consensus GCATCTTATTTGCTGAAGTTCTAGAACCATGGATGTCAACCACTTCAATTTTCCAGTATA

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rJMFF051D15+ ATGGTGATGAGCTATTATTATTCTTAAATGGAAGACCAAGCATTTGCATCAATCCAATTG
rJMSF022M10+ ATGGTGATGAGCTATTATTATTCTTAAATGGAAGACCAAGCATTTGCATCAATCCAATTG
rJMFF025I19+ ATGGTGATGAGCTATTATTATTCTTAAATGGAAGACCAAGCATTTGCATCAATCCAATTG
rJMSF004L01+ ATGGTGATGAGCTATTATTATTCTTAAATGGAAGACCAAGCATTTGCATCAATCCAATTG
rJMSF037J20+ ATGGTGATGAGCTATTATTATTCTTAAATGGAAGACCAAGCATTTGCATCAATCCAATTG
rJMSF041N24+ ATGGTGATGAGCTATTATTATTCTTAAATGGAAGACCAAGCATTTGCATCAATCCAATTG
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consensus ATGGTGATGAGCTATTATTATTCTTAAATGGAAGACCAAGCATTTGCATCAATCCAATTG

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rJMFF051D15+ AAGGCTATGGGACTCAAGAAAGCATCAGGTATGCCAAAGGAGTTCACCAATGCAAGCGCG
rJMSF022M10+ AAGGCTATGGGACTCAAGAAAGCATCAGGTATGCCAAAGGAGTTCACCAATGCAAGCGCG
rJMFF025I19+ AAGGCTATGGGACTCAAGAAAGCATCAGGTATGCCAAAGGAGTTCACCAATGCAAGCGCG
rJMSF004L01+ AAGGCTATGGGACTCAAGAAAGCATCAGGTATGCCAAAGGAGTTCACCAATGCAAGCGCG
rJMSF037J20+ AAGGCTATGGGACTCAAGAAAGCATCAGGTATGCCAAAGGAGTTCACCAATGCAAGCGCG
rJMSF041N24+ AAGGCTATGGGACTCAAGAAAGCATCAGGTATGCCAAAGGAGTTCACCAATGCAAGCGCG
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consensus AAGGCTATGGGACTCAAGAAAGCATCAGGTATGCCAAAGGAGTTCACCAATGCAAGCGCG

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rJMFF051D15+ TGTGGTCGAAGTTCACTGCAAAGCTTTGCGACTTCTTTCCTAATTGTGGCAGCATTATCT
rJMSF022M10+ TGTGGTCGAAGTTCACTGCAAAGCTTTGCGACTTCTTTCCTAATTGTGGCAGCATTATCT
rJMFF025I19+ TGTGGTCGAAGTTCACTGCAAAGCTTTGCGACTTCTTTCCTAATTGTGGCAGCATTATCT
rJMSF004L01+ TGTGGTCGAAGTTCACTGCAAAGCTTTGCGACTTCTTTCCTAATTGTGGCAGCATTATCT
rJMSF037J20+ TGTGGTCGAAGTTCACTGCAAAGCTTTACGACTTCTTTCCTAATTGTGGCAGCATTATCT
rJMSF041N24+ TGTGGTCGAAGTTCACTGCAAAGCTTTGCGACTTCTTTCCTAATTGTGGCAGCATTATCT
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consensus TGTGGTCGAAGTTCACTGCAAAGCTTTGCGACTTCTTTCCTAATTGTGGCAGCATTATCT

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rJMFF051D15+ GTCGACAAGTATCCATACCGTAGGAATGCAGCATCTTCGTCCAATGTGAATAGAGCGTAC
rJMSF022M10+ GTCGACAAGTATCCATACCGTAGGAATGCAGCATCTTCGTCCAATGTGAATAGAGCGTAC
rJMFF025I19+ GTCGACAAGTATCCATACCGTAGGAATGCAGCATCTTCGTCCAATGTGAATAGAGCGTAC
rJMSF004L01+ GTCGACAAGTATCCATACCGTAGGAATGCAGCATCTTCGTCCAATGTGAATAGAGCGTAC
rJMSF037J20+ GTCGACAAGTATCCATACCGTAGGAATGCAGCATCTTCGTCCAATGTGAATAGAGCGTAC
rJMSF041N24+ GTCGACAAGTATCCATACCGTAGGAATGCAGCATCTTCGTCCAATGTGAATAGAGCGTAC
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consensus GTCGACAAGTATCCATACCGTAGGAATGCAGCATCTTCGTCCAATGTGAATAGAGCGTAC

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rJMFF051D15+ ATTGATCTTA
rJMSF022M10+ ATTGATCTTACGAGACCAAGTGCATTCTTAATGGGAATGGAGTTTACAGAAGCCTCAGCC
rJMFF025I19+ ATTGATCTTACGAGACCAAGTGCATTCTTAATGGGAATGGAGTTTACAGAAGCCTCAGCC
rJMSF004L01+ ATTGATCTTACGAGACCAAGTGCATTCTTAAT
rJMSF037J20+ ATTGATCTTACGAGACCAAGTGCATTCTTAATGGGAATGGAGTTTACAGAAGCCTCAGCC
rJMSF041N24+ ATTGATCTTACGAGACCAAGTGCATTCTTAATGGGAATGGAGTTTACAGAAGCCTCAGCC
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consensus ATTGATCTTACGAGACCAAGTGCATTCTTAATGGGAATGGAGTTTACAGAAGCCTCAGCC

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rJMSF022M10+ TCTACAAAAGTTTGGAAAATTGCTCGGTCTGCAAAGGCTCTGCCCAAGTCTTCAGCGAGT
rJMFF025I19+ TCTACAAAAGTTTGGAAAATTGCTCGGTCTGCAAAGGCTCTGCCCAAGTCTTCAGCGAGT
rJMSF037J20+ TCTACAAAAGTTTGGAAAATTGCTCGGTCTGCAAAGGCTCTGCCCAAGTCTTCAGCGAGT
rJMSF041N24+ TCTACAAAAGTTTGGAAAATTGCTCGGTCTGCAAAGGCTCTGCCCAAGTCTTCAGCGAGT
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consensus TCTACAAAAGTTTGGAAAATTGCTCGGTCTGCAAAGGCTCTGCCCAAGTCTTCAGCGAGT

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rJMSF022M10+ TGGTAACTCA
rJMFF025I19+ TGGTAACTCATTGCAAAGGCATATTCTTTACTTTCTCCCTGTGATTGCCTGACTGAAACT
rJMSF037J20+ TGGTAACTCATTGCAAAGGCATATTCTTTACTTTCTCCCTGTGATTGCCTGACTGAAACT
rJMSF041N24+ TGGTAACTCATTGCAAAGGCATATTCTTTACTTTCTCCCTGTGATTGCCTGACTGAAACT
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consensus TGGTAACTCATTGCAAAGGCATATTCTTTACTTTCTCCCTGTGATTGCCTGACTGAAACT

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rJMFF025I19+ TC
rJMSF037J20+ TCAGCAGCAAAGCGATTCAAAAGGTCTCTCTCCCGCAGGCAGAGTATGTCAGTCTGGAAA
rJMSF041N24+ TCAGCAGCAAAGCGATTCAAAAGGTCTCTCTCCCGCAGGCAGAGTATGTCAGTCTGGAAA
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consensus TCAGCAGCAAAGCGATTCAAAAGGTCTCTCTCCCGCAGGCAGAGTATGTCAGTCTGGAAA

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rJMSF037J20+ CGGATACTCCTTAGGGCATCACTTGAAAGCTGAGAAGGTATAACAGGAGAAGATTCATTC
rJMSF041N24+ CGGATACTCC
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consensus CGGATACTCCTTAGGGCATCACTTGAAAGCTGAGAAGGTATAACAGGAGAAGATTCATTC

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rJMSF037J20+ ATGTGTTCC
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consensus ATGTGTTCC