Alignment Contig 4168

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF050M14+ ACCCTGGAGAGTTTTTTTTTTTTTTTTCGGAAGAACAGATTTTTAACATTCAAACATAAC
rJMFF033B22+ TAAC
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consensus ACCCTGGAGAGTTTTTTTTTTTTTTTTCGGAAGAACAGATTTTTAACATTCAAACATAAC

. : . : . : . : . : . :
rJMFF050M14+ CAACCAACTTATAAAAAGATACAATAGATATAACAAAGGCATATTTTGCACTGCCCTTTG
rJMFF033B22+ CAACCAACTTATAAAAAGATACAATAGATATAACAAAGGCATATTTTGCACTGCCCTTTG
rJMSF020I03+ AAAAGATACAATAGATATAACAAAGGCATATTTTGCACTGCCCTTTG
rJMSF028P15+ CAATAGATATAACAAAGGCATATTTTGCACTGCCCTTTG
rJMSF003B06+ AAAAGATACAATAGATATAACAAAGGCATATTTTGCACTGCCCTTTG
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consensus CAACCAACTTATAAAAAGATACAATAGATATAACAAAGGCATATTTTGCACTGCCCTTTG

. : . : . : . : . : . :
rJMFF050M14+ CTTGCTTGACAGATTACACATAACAATAATTATAATAATAAAAGTTCCTATATGGAAGAT
rJMFF033B22+ CTTGCTTGACAGATTACACATAACAATAATTATAATAATAAAAGTTCCTATATGGAAGAT
rJMSF020I03+ CTTGCTTGACAGATTACACATAACAATAATTATAATAATAAAAGTTCCTATATGGAAGAT
rJMSF028P15+ CTTGCTTGACAGATTACACATAACAATAATTATAATAATAAAAGTTCCTATATGGAAGAT
rJMSF003B06+ CTTGCTTGACAGATTACACATAACAATAATTATAATAATAAAAGTTCCTATATGGAAGAT
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consensus CTTGCTTGACAGATTACACATAACAATAATTATAATAATAAAAGTTCCTATATGGAAGAT

. : . : . : . : . : . :
rJMFF050M14+ CAAAAATAGAACTTATTAAAGACCTATAATAAGTTTAGCAAATCTAAGAGAGAATTATAT
rJMFF033B22+ CAAAAATAGAACTTATTAAAGACCTATAATAAGTTTAGCAAATCTAAGAGAGAATTATAT
rJMSF020I03+ CAAAAATAGAACTTATTAAAGACCTATAATAAGTTTAGCAAATCTAAGAGAGAATTATAT
rJMSF028P15+ CAAAAATAGAACTTATTAAAGACCTATAATAAGTTTAGCAAATCTAAGAGAGAATTATAT
rJMSF003B06+ CAAAAATAGAACTTATTAAAGACCTATAATAAGTTTAGCAAATCTAAGAGAGAATTATAT
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consensus CAAAAATAGAACTTATTAAAGACCTATAATAAGTTTAGCAAATCTAAGAGAGAATTATAT

. : . : . : . : . : . :
rJMFF050M14+ TCTCCATGCAATATAACCCTTTGACTTTCTATAACTATATGGGAAATGGAAATGGAAATG
rJMFF033B22+ TCTCCATGCAATATAACCCTTTGACTTTCTATAACTATATGGGAAATGGAAATGGAAATG
rJMSF020I03+ TCTCCATGCAATATAACCCTTTGACTTTCTATAACTATATGGGAAATGGAAATGGAAATG
rJMSF028P15+ TCTCCATGCAATATAACCCTTTGACTTTCTATAACTATATGGGAAATGGAAATGGAAATG
rJMSF003B06+ TCTCCATGCAATATAACCCTTTGACTTTCTATAACTATATGGGAAATGGAAATGGAAATG
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consensus TCTCCATGCAATATAACCCTTTGACTTTCTATAACTATATGGGAAATGGAAATGGAAATG

. : . : . : . : . : . :
rJMFF050M14+ GAAATGGCATAGCTGTAAGGTGTTTTTGGACCTGAAAATGGCAGACCAAATCGAGTTGCG
rJMFF033B22+ GAAATGGCATAGCTGTAAGGTGTTTTTGGACCTGAAAATGGCAGACCAAATCGAGTTGCG
rJMSF020I03+ GAAATGGCATAGCTGTAAGGTGTTTTTGGACCTGAAAATGGCAGACCAAATCGAGTTGCG
rJMSF028P15+ GAAATGGCATAGCTGTAAGGTGTTTTTGGACCTGAAAATGGCAGACCAAATCGAGTTGCG
rJMSF003B06+ GAAATGGCATAGCTGTAAGGTGTTTTTGGACCTGAAAATGGCAGACCAAATCGAGTTGCG
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consensus GAAATGGCATAGCTGTAAGGTGTTTTTGGACCTGAAAATGGCAGACCAAATCGAGTTGCG

. : . : . : . : . : . :
rJMFF050M14+ TTCTTGGTCCATAAAGCGGTGAGGCGAGGCGAGGCTGCAAACAACCTAGTACCAGCTGAG
rJMFF033B22+ TTCTTGGTTCATAGAGCGGTGAGGCGAGGCGAGGCTGCAGACAACCTAGTACCAGCTGAG
rJMSF020I03+ TTCTTGGTCCATAGAGCGGTGAGGCGAGGCGAGGCTGCAGACAACCTAGTACCAGCTGAG
rJMSF028P15+ TTCTTGGTCCATAGAGCGGTGAGGCGAGGCGAGGCTGCAGACAACCTAGTACCAGCTGAG
rJMSF003B06+ TTCTTGGTCCATAGAGCGGTGAGGCGAGGCGAGGCTGCAGACAACCTAGTACCAGCTGAG
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consensus TTCTTGGTCCATAGAGCGGTGAGGCGAGGCGAGGCTGCAGACAACCTAGTACCAGCTGAG

. : . : . : . : . : . :
rJMFF050M14+ GATGTCTTTCTTTGGCAGGGGTGGAACGCCAAGTAAGCCTTCAGAGTAATCGGAGGGTGG
rJMFF033B22+ GATGTCTTTCTTTGGCAGGGGTGGAACGCCAAGTAAGCCTTCAGAGTAATCGGAGGGTGG
rJMSF020I03+ GATGTCTTTCTTTGGCAGGGGTGGAACGCCAAGTAAGCCTTCAGAGTAATCGGAGGGTGG
rJMSF028P15+ GATGTCTTTCTTTGGCAGGGGTGGAACGCCAAGTAAGCCTTCAGAGTAATCGGAGGGTGG
rJMSF003B06+ GATGTCTTTCTTTGGCAGGGGTGGAACGCCAAGTAAGCCTTCAGAGTAATCGGAGGGTGG
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consensus GATGTCTTTCTTTGGCAGGGGTGGAACGCCAAGTAAGCCTTCAGAGTAATCGGAGGGTGG

. : . : . : . : . : . :
rJMFF050M14+ GAGGTTGAAGGGAGGGCCAAACATGAAGGGGAGTGTCTCGATGGAGCTGACGTTGAAAGG
rJMFF033B22+ GAGGTTGAAGGGAGGGCCAAACATGAAGGGGAGTGTCTCGATGGAGCTGACGTTGAAAGG
rJMSF020I03+ GAGGTTGAAGGGAGGGCCAAACATGAAGGGGAGTGTCTCGATGGAGCTGACGTTGAAAGG
rJMSF028P15+ GAGGTTGAAGGGAGGGCCAAACATGAAGGGGAGTGTCTCGATGGAGCTGACGTTGAAAGG
rJMSF003B06+ GAGGTTGAAGGGAGGGCCAAACATGAAGGGGAGTGTCTCGATGGAGCTGACGTTGAAAGG
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consensus GAGGTTGAAGGGAGGGCCAAACATGAAGGGGAGTGTCTCGATGGAGCTGACGTTGAAAGG

. : . : . : . : . : . :
rJMFF050M14+ GGAGTTCAGAGCCTTGGGCTGCTCGAACTGGTCTCCCGATGTGAACATGG
rJMFF033B22+ GGAGTTCAGAGCCTTGGGCTGCTCGAACTGGTCTCCCGATGTGAACATGGGACGAGTCGA
rJMSF020I03+ GGAGTTCAGAGCCTTGGGCTGCTCGAACTGGTCTCCCGATGTGAACATGGGACGAGTCGA
rJMSF028P15+ GGAGTTCAGAGCCTTGGGCTGCTCGAACTGGTCTCCCGATGTGAACATGGGACGAGTCGA
rJMSF003B06+ GGAGTTCAGAGCCTTGGGCTGCTCGAACTGGTCTCCCGATGTGAACATGGGACGAGTCGA
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consensus GGAGTTCAGAGCCTTGGGCTGCTCGAACTGGTCTCCCGATGTGAACATGGGACGAGTCGA

. : . : . : . : . : . :
rJMFF033B22+ GGAAATGTTGCTCTCCTGGAAGATATTCCCCGGGATGATCCCTTGGTTTTGAAGGAAACC
rJMSF020I03+ GGAAATGTTGCTCTCCTGGAAGATATTCCCCGGGATGATCCCTTGGTTTTGAAGGAAACC
rJMSF028P15+ GGAAACGTTGCTCTCCTGGAAGATATTCCCCGGGATGATCCCTTGGTTTTGAAGGAAACC
rJMSF003B06+ GGAAATGTTGCTCTCCTGGAAGATATTCCCCGGGATGATCCCTTGGTTTTGAAGGAAACC
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consensus GGAAATGTTGCTCTCCTGGAAGATATTCCCCGGGATGATCCCTTGGTTTTGAAGGAAACC

. : . : . : . : . : . :
rJMFF033B22+ GCCCTGATGACACTGAAATGTTGGTTTGTTGAAGAGGTTGTTCTTTAGCAGGTCCAGAGT
rJMSF020I03+ GCCCTGATGACACTGAA-TGTTGGTTTGTTGAAGAGGTTGTTCTTTAGCAGGTCCAGAGT
rJMSF028P15+ GCCCTGATGACACTGAA-TGTTGGTTTGTTGAAGAGGTTGTTCTTTAGCAGGTCCAGAGT
rJMSF003B06+ GCCCTGATGACACTGAA-TGTTGGTTTGTTGAAGAGGTTGTTCTTTAGCAGGTCCAGAGT
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consensus GCCCTGATGACACTGAA-TGTTGGTTTGTTGAAGAGGTTGTTCTTTAGCAGGTCCAGAGT

. : . : . : . : . : . :
rJMFF033B22+ TCCTAGGATTCGAGATTTT
rJMSF020I03+ TCCTAGGATTCGAGATTTTGTTCCCCTGGATGTTTGTGTCGTAGANCGACATGAGATCGT
rJMSF028P15+ TCCTAGGATTCGAGATTTTGTTCCCCTGGATGTTTGTGTCGTAGAACGACATGAGATCGT
rJMSF003B06+ TCCTAGGATTCGAGATTTTGTTCCCCTGGATGTTTGTGTCGTAAAACGACATGAGATCGT
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consensus TCCTAGGATTCGAGATTTTGTTCCCCTGGATGTTTGTGTCGTAGAACGACATGAGATCGT

. : . : . : . : . : . :
rJMSF020I03+ TGATCATCCTTTGCCCGTCTTCTGGAACACCGAGTCCCGAGAGATTGAAGGA
rJMSF028P15+ TGATCATCCTTTGCCCGTCTTCTGGAACACCGAGTCC
rJMSF003B06+ TGATCATCCTTTGCCCGTCTTCTGGAACACCGAGTCC
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consensus TGATCATCCTTTGCCCGTCTTCTGGAACACCGAGTCCCGAGAGATTGAAGGA