Alignment Contig 4156

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF049I19+ TTTGCATAAACTGGCTCTGATAAAATTAACTTTTTTTCCCCAAATAAAATACCAGTACCA
rJMFF015P18+ TTTTTTTCCCCAAATAAAATACCAGTACCA
rJMSF043C02+ TACCA
rJMSF043F12+ TACCA
rJMSF002O14+ CCA
rJMSF037D15+ ACCA
rJMSF023L02+ TACCA
____________________________________________________________
consensus TTTGCATAAACTGGCTCTGATAAAATTAACTTTTTTTCCCCAAATAAAATACCAGTACCA

. : . : . : . : . : . :
rJMFF049I19+ AAGCACAAATAAACCACCATCAGAAAAAAAAAAAC-AGTTCCAG-TCTTAAACAAACTAC
rJMFF015P18+ AAGCACAAATAATTCACCATCAGAAAAAAAAAAAATAGTTCCAG-TCTTAATCAAACTAC
rJMSF043C02+ AAGCACAAATAATTCACCATCAGAAAAAAAAAAAATAGTTCCNGNTCTTAATCAAACTAC
rJMSF043F12+ AAGCACAAATAATTCACCATCAGAAAAAAAAAAAATAGTTCCNGTTCTTAATCAAACTAC
rJMSF002O14+ AAGCACAAATAATTCACCATCAGAAAAAAAAAAAATAGTTCCNGTTCTTAATCAAACTAC
rJMSF037D15+ AAGCACAAATAATTCACCATCAGAAAAAAAAAAAATAGTTCCNGNTCTTAATCAAACTAC
rJMSF023L02+ AAGCACAAATAATTCACCATCAGAAAAAAAAAAAATAGTTCCNGNTCTTAATCAAACTAC
____________________________________________________________
consensus AAGCACAAATAATTCACCATCAGAAAAAAAAAAAATAGTTCCAGTTCTTAATCAAACTAC

. : . : . : . : . : . :
rJMFF049I19+ CCTG-ACAATTAACAGCCGGGAGCAAAGAAGACAAGGTGCACATCTATAGTGTCCACACA
rJMFF015P18+ CCTG-ACAATTAACAGCTGGGAGCAATGAAAACAAGGGGCNCNTCTATAGNGTCCNCACA
rJMSF043C02+ CCNG-ACAATTAACAGCTGGGAGCAATGAANACAAGGGGCACATCTATAGNGNCCACACA
rJMSF043F12+ CCNG-ACAATTAACAGCTGGGAGCAANGAANACAAGGGGCACATCTATAGNGTCCACACA
rJMSF002O14+ CCNGGACAATTAACAGCNGGGAGCAANGAANACAAGGGGCACATCTATAGNGTCCACACA
rJMSF037D15+ CCNG-ACAATTAACAGCNGGGAGCAATGAANACAAGGGGCACATCTATAGNGNCCACACA
rJMSF023L02+ CCNG-ACAATTAACAGCNGGGAGCAANGAANACAAGGGGCACATCTATNGNGNCCACACA
____________________________________________________________
consensus CCTG-ACAATTAACAGCTGGGAGCAATGAAAACAAGGGGCACATCTATAGTGTCCACACA

. : . : . : . : . : . :
rJMFF049I19+ AAGCC
rJMFF015P18+ AAGCCTGGNGCATCTTTCCTGNGCCCAGCCAATGTCCGGNACAAGTACNTTTTCTCTACC
rJMSF043C02+ AAGCCGGGGGCATCTTTCCNGNGCCCAGCCAANGTCCGGTACAAGTACATTTTCTCTACC
rJMSF043F12+ AAGCCNGGGGCATCTTTCCNGGGCCCAGCCAANGTCCGGTACAAGTACATTTTCNCTACC
rJMSF002O14+ AAGCCNGGGGCATCTTTCCNGGGCCCAGCCAANGNCCGGTACAAGTACATTTTCTCTACC
rJMSF037D15+ AAGCCGGGGGCATCTTTCCNGGGCCCAGCCAANGTCCGGTACAAGTACATTTTCTCTACC
rJMSF023L02+ AAGCCGGGGGCATCTTTCCNGGGCCCAGCCAANGTCCGGTACAAGTACATTTTCTCTACC
____________________________________________________________
consensus AAGCCGGGGGCATCTTTCCTGGGCCCAGCCAATGTCCGGTACAAGTACATTTTCTCTACC

. : . : . : . : . : . :
rJMFF015P18+ TTCTGCCCATCATCATGGCTAGTCTCTGCCTGCTCNCTCNCATTGATGATTTCCACATTC
rJMSF043C02+ TTCNGCCCATCATCANGGCTAGTCTCTGCCNGCTCACTCTCATTGATGATTTCCACATTC
rJMSF043F12+ TTCNGCCCATCATCANGGCTAGTCTCTGCCNGCTCACTCTCATTGATGATTTCCACATTC
rJMSF002O14+ TTCNGCCCATCATCANGGCTAGTCNCTGCCNGCTCACTCNCATTGATGATTTCCACATTC
rJMSF037D15+ TTCNGCCCATCATCANGGCTAGTCNCTGCCNGCTCACTCNCATTGANGATTTCCACATTC
rJMSF023L02+ TTCNGCCCATCATCANGGCTAGTCTCTGCCNGCTCACTCTCATTGATGATTTCCACATTC
____________________________________________________________
consensus TTCTGCCCATCATCATGGCTAGTCTCTGCCTGCTCACTCTCATTGATGATTTCCACATTC

. : . : . : . : . : . :
rJMFF015P18+ AGTCTTGGCATCTTCTTGGCCAAAATCTTGCATGCNCCGAGGGTCNCTTCNCAGGACNAC
rJMSF043C02+ AGTCTTGGCATCTTCTTGGCCANAATCTTGCANGCNCCGAGGGTCACTTCNCAGGACGAC
rJMSF043F12+ AGTCTNGGCATCTTCTTGGCCANAATCTTGCANGCNCCGAGGGTCACTTCNCAGGACGAC
rJMSF002O14+ AGTCTNGGCATCTTCTTGGCCANAATCTTGCANGCNCCGAGGGTCACTTCNCAGGACGAC
rJMSF037D15+ AGTCTTGGCATCTTCTTGGCCANAATCTTGCANGCNCCGAGGGTCACTTCNCAGGACGAC
rJMSF023L02+ AGTCTNGGCATCTTCTTGGCCANAATCTTGCANGCNCCGAGGGTCACTTCNCAGGACGAC
____________________________________________________________
consensus AGTCTTGGCATCTTCTTGGCCAAAATCTTGCATGCNCCGAGGGTCACTTCNCAGGACGAC

. : . : . : . : . : . :
rJMFF015P18+ ATCCAAAGGGATCNCATTGTTTCATACTTCCCCNCGTCCNCTAAAAGNGCTGCATTACCA
rJMSF043C02+ ATCCAAAGGGATCGCATTGTTTCATACTTCCCCNCGTCCGCTANAAGNGCTGCATTACCA
rJMSF043F12+ ATCCAAAGGGATCGCATTGTTTCANACTTCCCCNCGTCCGCTANAAGNGCTGCATTACCA
rJMSF002O14+ ATCCAAAGGGATCGCATTGTTTCANACTTCCCCNCGTCCGCTANAAGNGCTGCATTACCA
rJMSF037D15+ ATCCAAAGGGATCGCATTGTTTCANACTTCCCCNCGTCCGCTANAAGNGCTGCATTACCA
rJMSF023L02+ ATCCAAAGGGATCGCATTGTTTCANACTTCCCCNCGTCCGCTANAAGNGCTGCATTACCA
____________________________________________________________
consensus ATCCAAAGGGATCGCATTGTTTCATACTTCCCCNCGTCCGCTAAAAGNGCTGCATTACCA

. : . : . : . : . : . :
rJMFF015P18+ AACGGGCTATCTCTGATCNCAAGCTTCTTTAGTTTCTTGCATCCATTTAAAACATAAAGC
rJMSF043C02+ AACGGGCTATCTCTGATCNCAAGCTTCTTTAGTTTCTTGCATCCATTTANAACATAAAGC
rJMSF043F12+ AACGGGCTATCTCTGATCNCAAGCTTCTTTAGTTTCTTGCATCCATTTANAACATAAAGC
rJMSF002O14+ AACGGGCTATCTCTGATCNCAAGCTTCTTTAGTTTCTTGCATCCATTTAAAANATAAAGC
rJMSF037D15+ AACGGGCTATCTCTGATCNCAAGCTTCTTTAGTTTCTTGCATCCATTTAAAANATAAAGC
rJMSF023L02+ AACGGGCTATCTCTGATCNCAAGCTTCTTTAGTTTCTTGCATCCATTTAAAANATAAAGC
____________________________________________________________
consensus AACGGGCTATCTCTGATCNCAAGCTTCTTTAGTTTCTTGCATCCATTTAAAACATAAAGC

. : . : . : . : . : . :
rJMFF015P18+ ATTCCCTTGTCNCTCTTACCANCAAAGGCTATGGAAAGCATTTCAAGCTGCTCTGCATAC
rJMSF043C02+ ATTCCCTTGTCACTCTTACCAGCAAAGGCTATGGANAGCATTTCAAGCTGCTCTGCATAC
rJMSF043F12+ ATTCCCTTGTCNCTCTTACCAGCAAAGGCTATGGANAGCATTTCAAGCTGCTCTGCATAC
rJMSF002O14+ ATTCCCTTGNCACTCTTACCAGCAAAGGCTATGGANAGCATTTCAAGCTGCTCTGCATAC
rJMSF037D15+ ATTCCCTTGTCNCTCTTACCAGCAAAGGCTATGGANAGCATTTCAAGCTGCTCTGCATAC
rJMSF023L02+ ATTCCCTTGTCNCTCTTACCAGCAAAGGCTATGGANAGCATTTCAAGCTGCTCTGCATAC
____________________________________________________________
consensus ATTCCCTTGTCACTCTTACCAGCAAAGGCTATGGAAAGCATTTCAAGCTGCTCTGCATAC

. : . : . : . : . : . :
rJMFF015P18+ ATACCAATGTATAGGAAAACCTGATCAGTTAAAAGGCCA
rJMSF043C02+ ATACCAANGTATAGGAAAACCTGATCAGTTANAAGGCCANANACGGANAACCTCTTAAGC
rJMSF043F12+ ATACCAATGTATAGGAAAACCTGATCAGTTAAAAGGCCANANACGGATAACCNCTTAAGC
rJMSF002O14+ ATACCAATGTATAGGAAAACCTGATCAGTTAAAAGGCCANAAACGGATAACCNCTTAAGC
rJMSF037D15+ ATACCAANGTATAGGAAAACCTGATCANTTANAAGGCCAAANACGGANAACCNCTTAAGC
rJMSF023L02+ ATACCAANGTATAGGAAAACCNGATCAGTTANAAGGCCANANACGGANAACCNCTTAAGC
____________________________________________________________
consensus ATACCAATGTATAGGAAAACCTGATCAGTTAAAAGGCCAAAAACGGATAACCTCTTAAGC

. : . : . : . : . : . :
rJMSF043C02+ CCTTTGCATGATTGAACAATTGCCCCAAAACCCTCATCCAATGGCTGCATTGTCACTGCA
rJMSF043F12+ CCTTTGCATGATTGAACAATTGCCCCAAAACCCTCATCCAATGGCTGCATTGTCACTGCA
rJMSF002O14+ CCTTTGCATGATTGAACAATTGCCCCAAAACCCTCATCCAATGGCTGCATTGTCACTGCA
rJMSF037D15+ CCTTTGCATGATTGAANAATTGCCCCAAAACCCNCATCCAATGGCTGCATTGTCACTGCA
rJMSF023L02+ CCTTTGCATGATTGAACAATTGCCCCAAAACCCTCATCCAATGGCTGCATTGTCACTGCA
____________________________________________________________
consensus CCTTTGCATGATTGAACAATTGCCCCAAAACCCTCATCCAATGGCTGCATTGTCACTGCA

. : . : . : . : . : . :
rJMSF043C02+ TCTGGCACAGTTGGGTTAAGGGTGCACAACCTAAAGCGAATGAAATTAGGGCAATTCTTG
rJMSF043F12+ TCTGGCA
rJMSF002O14+ TCTGGCACAGTTGGGTTAAGGGTGCACAACCTAAAGCGAATGAAATTAGGGCAAT
rJMSF037D15+ TCTGGCACAGTTGGGTTAAGGGTGCACAACCTAAAGCGAATGAAATTAGGGCAAT
rJMSF023L02+ TCTGGCACAGTTGGGTTAAGGGTGCACAACCTAAAGCGAATGAAATTAGGGCAAT
____________________________________________________________
consensus TCTGGCACAGTTGGGTTAAGGGTGCACAACCTAAAGCGAATGAAATTAGGGCAATTCTTG

. : . : . : . : . : . :
rJMSF043C02+ GCAACAGCTATCAGTGCTGCATTANTCATCTGCTGGCANA
____________________________________________________________
consensus GCAACAGCTATCAGTGCTGCATTANTCATCTGCTGGCANA