Alignment Contig 4154

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF049C20+ ACCCTGGAGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACCCAATCAACTAAC
rJMFF046H11+ AACCCAATCAACTAAC
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consensus ACCCTGGAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCAATCAACTAAC

. : . : . : . : . : . :
rJMFF049C20+ ATCCATTTCCCAAACAGGGCCTTAATATGTTATGAATGTTCACTTTGCATGCTCAAGTTC
rJMFF046H11+ ATCCATTTCCCAAACAGGGCCTTAATATGTTATGAATGTTCACTTTGCATGCTCAAGTTC
rJMFF018B24+ AACAGGGCCTTAATATGTTATGAATGTTCACTTTGCATGCTCAAGTTC
rJMSF001I06+ GGGCCTTAATATGTTATGAATGTTCACTTTGCATGCTCAAGTTC
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consensus ATCCATTTCCCAAACAGGGCCTTAATATGTTATGAATGTTCACTTTGCATGCTCAAGTTC

. : . : . : . : . : . :
rJMFF049C20+ ATATGTTTGGCAAAAGACTATAGAAGTATAATGTTGATATAGTATCTAAAAATTTGCAAA
rJMFF046H11+ ATATGTTTGGCAAAAGACTATAGAAGTATAATGTTGATATAGTATCTAAAAATTTGCAAA
rJMFF018B24+ ATATGTTTGGCAAAAGACTATAGAAGTATAATGTTGATATAGTATCTAAGAATTTGCAAA
rJMSF046A05+ TATCTAAGAATTTGCAAA
rJMSF001I06+ ATATGTTTGGCAAAAGACTATAGAAGTATAATGTTGATATAGTATCTAAGAATTTGCAAA
rJMSF043A08+ TATGTTTGGCAAAAGACTATAGAAGTATAATGTTGATATAGTATCTAAGAATTTGCAAA
rJMSF039F22+ AAAGACTATAGAAGTATAATGTTGATATAGTATCTAAGAATTTGCAAA
rJMFF013K02+ AA
rJMSF021E09+ TATAGAAGTATAATGTTGATATAGTATCTAAGAATTTGCAAA
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consensus ATATGTTTGGCAAAAGACTATAGAAGTATAATGTTGATATAGTATCTAAGAATTTGCAAA

. : . : . : . : . : . :
rJMFF049C20+ TAATATTGAGTGTAAACAATACAGGG-TGTAAAGTGTTTATGCAGCTCTGTATCTATAGG
rJMFF046H11+ TAATATTGAGTGTAAACAATACAGGG-TGTAAAGTGTTTATGCAGCTC
rJMFF018B24+ TAATATTGAGTGTAAACAATACAGGG-TGTAAAGTGTTTATGCAGCTCTGTATCTATAGG
rJMSF046A05+ TAATATTGAGTGTAAACAATACAGGG-TGTAAAGTGTTTATGCAGCTCTGTATCNATAGG
rJMSF001I06+ TAATATTGAGTGTAAACAATACAGGG-TGTAAAGTGTTTATGCAGCTCTGTATCTATAGG
rJMSF043A08+ TAATATTGAGTGTAAACAATACAGGGCTGTAAAGTGTTTATGCAGCTCTGTATCTATAGG
rJMSF039F22+ TAATATTGAGTGTAAACAATACAGGG-TGTAAAGTGTTTATGCAGCTCTGTATCTATAGG
rJMFF013K02+ TAATATTGAGTGTAAACAATACAGGG-TGTAAAGTGTTTATGCAGCTCTGTATCTATAGG
rJMSF021E09+ TAATATTGAGTGTAAACAATACAGGG-TGTAAAGTGTTTATGCAGCTCTGTATCTATAGG
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consensus TAATATTGAGTGTAAACAATACAGGG-TGTAAAGTGTTTATGCAGCTCTGTATCTATAGG

. : . : . : . : . : . :
rJMFF049C20+ CGATAATAGTGTTGCTAAAGAATTGTATGCTGCAAATAGCGAATTCTTCCACTTCTATGC
rJMFF018B24+ CGATAATAGTGTTGCTAAAGAATTGTATGCTGCAGATAGCGAATTCTTCCACTTCTATGC
rJMSF046A05+ CGATAATAGTGTTGCTAAAGAATTGTATGCTGCANATAGCGAATTCTTCCACTTCTATGC
rJMSF001I06+ CGATAATAGTGTTGCTAAAGAATTGTATGCTGCAGATAGCGAATTCTTCCACTTCTATGC
rJMSF043A08+ CGATAATAGTGTTGCTAAAGAATTGTATGCTGCAGATAGCGAATTCTTCCACTTCTATGC
rJMSF039F22+ CGATAATAGTGTTGCTAAAGAATTGTATGCTGCAGATAGCGAATTCTTCCACTTCTATGC
rJMFF013K02+ CGATAATAGTGTTGCTAAAGAATTGTATGCTGCAGATAGCGAATTCTTCCACTTCTATGC
rJMSF021E09+ CGATAATAGTGTTGCTAAAGAATTGTATGCTGCAGATAGCGAATTCTTCCACTTCTATGC
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consensus CGATAATAGTGTTGCTAAAGAATTGTATGCTGCAGATAGCGAATTCTTCCACTTCTATGC

. : . : . : . : . : . :
rJMFF049C20+ TTCCTCGCAACTCCAGACCTCATCACAACGATGACCTCCTCAACGAAGGGAATGTATCGT
rJMFF018B24+ TTCCTCGCAACTCCAGACCTCATCACAACGATGACCTCCTCAACGAAGGGAATGTATCGT
rJMSF046A05+ TTCCTCGCAACTCCAGACCTCATCACAACGATGACCTCCTCAACGAAGGGAATGTATCGN
rJMSF001I06+ TTCCTCGCAACTCCAGACCTCATCACAACGATGACCTCCTCAACGAAGGGAATGTATCGT
rJMSF043A08+ TTCCTCGCAACTCCAGACCTCATCACAACGATGACCTCCTCAACGAAGGGAATGTATCGT
rJMSF039F22+ TTCCTCGCAACTCCAGACCTCATCACAACGATGACCTCCTCAACGAAGGGAATGTATCGT
rJMFF013K02+ TTCCTCGCAACTCCAGACCTCATCACAACGATGACCTCCTCAACGAAGGGAATGTATCGT
rJMSF021E09+ TTCCTCGCAACTCCAGACCTCATCGCAACGATGACCTCCTCAACGAAGGGAATGTATCGT
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consensus TTCCTCGCAACTCCAGACCTCATCACAACGATGACCTCCTCAACGAAGGGAATGTATCGT

. : . : . : . : . : . :
rJMFF049C20+ TGCTGTCACTTGCCAGTTCTGGGACGCCCGCTCCACTTGCACTAACCGCTTTGCTTTCTG
rJMFF018B24+ TGCTGTCACTTGCCAGTTCTGGGACGCCCGCTCCACTTGCACTAACCGCTTTGCTTTCTG
rJMSF046A05+ TGCTGTCACTTGCCAGTTCTGGGACGCCCGCTCCACTTGCACTAACCGCTTTGCTTTCTG
rJMSF001I06+ TGCTGTCACTTGCCAGTTCTGGGACGCCCGCTCCACTTGCACTAACCGCTTTGCTTTCTG
rJMSF043A08+ TGCTGTCACTTGCCAGTTCTGGGACGCCCGCTCCACTTGCACTAACCGCTTTGCTTTCTG
rJMSF039F22+ TGCTGTCACTTGCCAGTTCTGGGACGCCCGCTCCACTTGCACTAACCGCTTTGCTTTCTG
rJMFF013K02+ TGCTGTCACTTGCCAGTTCTGGGACGCCCGCTCCACTTGCACTAACCGCTTTGCTTTCTG
rJMSF021E09+ TGCTGTCACTTGCCAGTTCTGGGACGCCCGCTCCACTTGCACTAACCGCTTTGCTTTCTG
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consensus TGCTGTCACTTGCCAGTTCTGGGACGCCCGCTCCACTTGCACTAACCGCTTTGCTTTCTG

. : . : . : . : . : . :
rJMFF049C20+ GATCCTCCGTTACTTTGGTATCGGTATCAACTTTTGAAGTATTTGGCACACAATGTTTTT
rJMFF018B24+ GATCCTCCGTTACTTTGGTATCGGTATCAACTTTTGAAGTATTTGGCACACAATGTTTTT
rJMSF046A05+ GATCCTCCGTTACTTTGGTATCGGTATCAACTTTTGAAGTATTTGGCACACAATGTTTTT
rJMSF001I06+ GATCCTCCGTTACTTTGGTATCGGTATCAACTTTTGAAGTATTTGGCACACAATGTTTTT
rJMSF043A08+ GATCCTCCGTTACTTTGGTATCGGTATCAACTTTTGAAGTATTTGGCACACAATGTTTTT
rJMSF039F22+ GATCCTCCGTTACTTTGGTATCGGTATCAACTTTTGAAGTATTTGGCACACAATGTTTTT
rJMFF013K02+ GATCCTCCGTTACTTTGGTATCGGTATCAACTTTTGAAGTATTTGGCACACAATGTTTTT
rJMSF021E09+ GATCCTCCGTTACTTTGGTATCGGTATCAACTTTTGAAGTATTTGGCACACAATGTTTTT
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consensus GATCCTCCGTTACTTTGGTATCGGTATCAACTTTTGAAGTATTTGGCACACAATGTTTTT

. : . : . : . : . : . :
rJMFF049C20+ GCACCCACCGGTCCGTCTCCCACAGGACATGCATTATGCTCTCCCGTGCTGTGTAGCCAT
rJMFF018B24+ GCACCCACCGGTCCGTCTCCCACAGGACATGCATTATGCTCTCCCGTGCTGTGTAGCCAT
rJMSF046A05+ GCACCCACCGGTCCGTCTCCCACAGGACATGCATTATGCTCTCCCGTGCTGTGTAGCCAT
rJMSF001I06+ GCACCCACCGGTCCGTCTCCCACAGGACATGCATTATGCTCTCCCGTGCTGTGTAGCCAT
rJMSF043A08+ GCACCCACCGGTCCGTCTCCCACAGGACATGCATTATGCTCTCCCGTGCTGTGTAGCCAT
rJMSF039F22+ GCACCCACCGGTCCGTCTCCCACAGGACATGCATTATGCTCTCCCGTGCTGTGTAGCCAT
rJMFF013K02+ GCACCCACCGGTCCGTCTCCCACAGGACATGCATTATGCTCTCCCGTGCTGTGTAGCCAT
rJMSF021E09+ GCACCCACCGGTCCGTCTCCCACAGGACATGCATTATGCTCTCCCGTGCTGTGTAGCCAT
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consensus GCACCCACCGGTCCGTCTCCCACAGGACATGCATTATGCTCTCCCGTGCTGTGTAGCCAT

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rJMFF049C20+ GACTCTCGAATGGCAAAATTACGAGGCGAC
rJMFF018B24+ GACTCTCGAATGGCAAAATTACGAGGCGACAAAGTGCCCCGTGACCTTTTAGGGCATTGA
rJMSF046A05+ GACTCTCGAATGGCAAAATTACGAGGCGACAAAGTGCCCCGTGACCTTTTANGGCATTGA
rJMSF001I06+ GACTCTCGAATGGCAAAATTACGAGGCGACAAAGTGCCCCGTGACCTTTTAGGGCATTGA
rJMSF043A08+ GACTCTCGAATGGCAAAATTACGAGGCGACAAAGTGCCCCGTGACCTTTTAGGGCATTGA
rJMSF039F22+ GACTCTCGAATGGCAAAATTACGAGGCGACAAAGTGCCCCGTGACCTTTTAGGGCATTGA
rJMFF013K02+ GACTCTCGAATGGCAAAATTACGAGGCGACAAAGTGCCCCGTGACCTTTTAGGGCATTGA
rJMSF021E09+ GACTCTCGAATGGCAAAATTACGAGGCGACAAAGTGCCCCGTGACCTTTTAGGGCATTGA
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consensus GACTCTCGAATGGCAAAATTACGAGGCGACAAAGTGCCCCGTGACCTTTTAGGGCATTGA

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rJMFF018B24+ AGAAACGGTCTGACTGCATCGTCAAGGTTCCCGGATTGTTGTCCTCTTCTCCGTGGATAA
rJMSF046A05+ AGAAACGGTCTGACTGCATCGTCAAGGTTCCCGGATTGTTGTCCTCTTCTCCGTGGATAA
rJMSF001I06+ AGAAACGGTCTGACTGCATCGTCAAGGTTCCCGGATTGTTGTCCTCTTCTCCGTGGATAA
rJMSF043A08+ AGAAACGGTCTGACTGCATCGTCAAGGTTCCCGGATTGTTGTCCTCTTCTCCGTGGATAA
rJMSF039F22+ AGAAACGGTCTGACTGCATCGTCAAGGTTCCCGGATTGTTGTCCTCTTCTCCGTGGATAA
rJMFF013K02+ AGAAACGGTCTGACTGCATCGTCNAGGTTCCCGGATTGTTGTCCTCTTCTCCGTGGATAA
rJMSF021E09+ AGAAACGGTCTGACTGCATCGTCAAGGTTCCCGGATTGTTGTCCTCTTCTCCGTGGATAA
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consensus AGAAACGGTCTGACTGCATCGTCAAGGTTCCCGGATTGTTGTCCTCTTCTCCGTGGATAA

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rJMFF018B24+ GCAGGATAGGCTTCTTAATTTTATTAGCTGACATGAACGGACTCATCTCGACATAAGTAC
rJMSF001I06+ GCAGGATAGGCTTCTTAATTTTATTAGCTGACATGAACGGACTCATCTCGACATAAGTAC
rJMSF043A08+ GCAGGATAGGCTTCTTAATTTTATTAGCTGACATGAACGGACTCATCTCGACATAAGTAC
rJMSF039F22+ GCAGGATAGGCTTCTTAATTTTATTAGCTGACATGAACGGACTCATCTCGACATAAGTAC
rJMFF013K02+ GCAGGATAGGCTTCTTAATTTTATTAGCTGACATGAACGGACTCATCTCGACATAAGTAC
rJMSF021E09+ GCAGGATAGGCTTCTTAATTTTATTAGCTGACATGAACGGACTCATCTCGACATAAGTAC
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consensus GCAGGATAGGCTTCTTAATTTTATTAGCTGACATGAACGGACTCATCTCGACATAAGTAC

. : . : . : . : . : . :
rJMFF018B24+ TAGTTGCCTCCCACAGCGTTCTGTCCTCGTTCTG
rJMSF001I06+ TAGTTGCCTCCCACAGCGTTCTGTCCTCGTTCTGAAACCCNAAAGGCGTTAGTGTTCTAT
rJMSF043A08+ TAGTTGCCTCCCACAGCGTTCTGTCCTCGTTCTGAAACCCAAAAGGCGTTAGTGTTCTAT
rJMSF039F22+ TAGTTGCCTCCCACAGCGTTCTGTCCTCGTTCTGAAACCCAAAAGGCGTTAGTGTTCTAT
rJMFF013K02+ TAGTTGCCTCCCACAGCGTTCTGTCCTCGNTCTGAAACCCAAA
rJMSF021E09+ TAGTTGCCTCCCACAGCGTTCTGTCCTCGTTCTGAAACCCAAAAGGCGTTAGTGTTCTAT
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consensus TAGTTGCCTCCCACAGCGTTCTGTCCTCGTTCTGAAACCCAAAAGGCGTTAGTGTTCTAT

. : . : . : . : . : . :
rJMSF001I06+ TATAAGCCCCAGAACGTGCAATTCC
rJMSF043A08+ TATA
rJMSF039F22+ TATAAGCCCCAGAACGTGCAATTCCACAAGAGAAAAGATGCGGGGCGTGTGCGAGGAGAT
rJMSF021E09+ TATAAGCCCCAGAACGTGCAATTCCACAAGAGAAAAGATGCGGGGCGTGTGCGAGGAGAT
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consensus TATAAGCCCCAGAACGTGCAATTCCACAAGAGAAAAGATGCGGGGCGTGTGCGAGGAGAT

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rJMSF039F22+ TTGCAGTCATAAATGCTCCATAAGAATGACCACCAACAGCAA-TTTTGCTCGGGTCAGCC
rJMSF021E09+ TTGCAGTCATAAATGCTCCATAAGAATGACCACCAACAGCAANTTTTGCTCGGGTCAGCC
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consensus TTGCAGTCATAAATGCTCCATAAGAATGACCACCAACAGCAANTTTTGCTCGGGTCAGCC

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rJMSF039F22+ ACTCCACGGCGAATAACTTCTCCTAATGCAGCCTCTGCACTTGCAACAAG
rJMSF021E09+ ACTCCACGGC
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consensus ACTCCACGGCGAATAACTTCTCCTAATGCAGCCTCTGCACTTGCAACAAG