Alignment Contig 4148

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rJMFF048M09+          ACCCTGGAGAGTTTTTTTTTTTTTTTTAGTAAGTAAAATGCAATTGACATAAGTTTTTCT

rJMSF049P23+                                                               TTTTTCT

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consensus             ACCCTGGAGAGTTTTTTTTTTTTTTTTAGTAAGTAAAATGCAATTGACATAAGTTTTTCT



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rJMFF048M09+          TTTGAGAACATCGATCAAAGGGGTCAGGTCGTGAGTGGGTGAAATCTCACCATGAACACA

rJMSF049P23+          TTTGAGAACATCGATCAAAGGGGTCAGGTCGTGAGTGGGTGAAATCTCACCATGAACACA

rJMSF014A03+                                                               GAACACA

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consensus             TTTGAGAACATCGATCAAAGGGGTCAGGTCGTGAGTGGGTGAAATCTCACCATGAACACA



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rJMFF048M09+          CAACAAATGGCAGATTTCCCTATTATATATAAATTGTTATTTCATCACACTGCAATTGAT

rJMSF049P23+          CAACAAATGGCAGATTTCCCTATTATATATAAATTGTTATTTCATCACACTGCAATTGAT

rJMSF014A03+          CAACAAATGGCAGATTTCCCTATTATATATAAATTGTTATTTCATCACACTGCAATTGAT

rJMSF010A05+                                                             GCAATTGAT

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consensus             CAACAAATGGCAGATTTCCCTATTATATATAAATTGTTATTTCATCACACTGCAATTGAT



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rJMFF048M09+          TGATACACCAAAACTTCCATGGCATCCCCATTTTGGTGGATTTTTGGGGAGTACTAATGA

rJMSF049P23+          TGATACACCAAAACTTCCATGGCATCCCCATTTTGGTGGATTTTTGGGGAGTACTAATGA

rJMSF014A03+          TGATACACCAAAACTTCCATGGCATCCCCATTTTGGTGGATTTTTGGGGAGTACTAATGA

rJMSF010A05+          TGATACACCAAAACTTCCATGGCATCCCCATTTTGGTGGATTTTTGGGGAGTACTAATGA

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consensus             TGATACACCAAAACTTCCATGGCATCCCCATTTTGGTGGATTTTTGGGGAGTACTAATGA



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rJMFF048M09+          CTGATGAGACTACTCAACTTTGCACAGAATCTATTCTCCACCAGAGGACATTGACATGCT

rJMSF049P23+          CTGATGAGACTACTCAACTTTGCACAGAATCTATTCTCCACCAGAGGACATTGACATGCT

rJMSF014A03+          CTGATGAGACTACTCAACTTTGCACAGAATCTATTCTCCACCAGAGGACATTGACATGCT

rJMSF010A05+          CTGATGAGACTACTCAACTTTGCACAGAATCTATTCTCCACCAGAGGACATTGACATGCT

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consensus             CTGATGAGACTACTCAACTTTGCACAGAATCTATTCTCCACCAGAGGACATTGACATGCT



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rJMFF048M09+          GTACTTGTACTTGAGGAAGGATCTAATGAAGGGATCTAGCTCCCCATCCATTACAGAAGT

rJMSF049P23+          GTACTTGTACTTGAGGAAGGATCTAATGAAGGGATCTAGCTCCCCATCCATTACAGAAGT

rJMSF014A03+          GTACTTGTACTTGAGGAAGGATCTAATGAAGGGATCTAGCTCCCCATCCATTACAGAAGT

rJMSF010A05+          GTACTTGTACTTGAGGAAGGATCTAATGAAGGGATCTAGCTCCCCATCCATTACAGAAGT

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consensus             GTACTTGTACTTGAGGAAGGATCTAATGAAGGGATCTAGCTCCCCATCCATTACAGAAGT



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rJMFF048M09+          GATGTCTGAAGTTTCATACCCGGTCCGAACATCTTTCACCAGCTTGTAAGGATGAAACAC

rJMSF049P23+          GATGTCTGAAGTTTCATACCCGGTCCGAACATCTTTCACCAGCTTGTAAGGATGAAACAC

rJMSF014A03+          GATGTCTGAAGTTTCATACCCGGTCCGAACATCTTTCACCAGCTTGTAAGGATGAAACAC

rJMSF010A05+          GATGTCTGAAGTTTCATACCCGGTCCAAACATCTTTCACCAGCTTGTAAGGATGAAACAC

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consensus             GATGTCTGAAGTTTCATACCCGGTCCGAACATCTTTCACCAGCTTGTAAGGATGAAACAC



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rJMFF048M09+          GTAGTTCCGTATTTGTTGCCCCCACTCTGCCTTCACCGCATCCCCTCTTATTTGCTTTAT

rJMSF049P23+          GTAGTTCCGTATTTGTTGCCCCCACTCTGCCTTCACCGCATCCCCTCTTATTTGCTTTAT

rJMSF014A03+          GTAGTTCCGTATTTGTTGCCCCCACTCTGCCTTCACCGCATCCCCTCTTATTTGCTTTAT

rJMSF010A05+          GTAGTTCCGTATTTGTTGCCCCCACTCTGCCTTCACCGCATCCCCTCTTATTTGCTTTAT

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consensus             GTAGTTCCGTATTTGTTGCCCCCACTCTGCCTTCACCGCATCCCCTCTTATTTGCTTTAT



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rJMFF048M09+          TTCAGACGCTCTTTGTTCCTCGGCTATGACTAGCAGTTTGGCTTTCAATCGGCTCAGAGC

rJMSF049P23+          TTCAGACGCTCTTTGTTCCTCGGCTATGACTAGCAGTTTGGCTTTCAATCGGCTCAGAGC

rJMSF014A03+          TTCAGACGCTCTTTGTTCCTCGGCTATGACTAGCAGTTTGGCTTTCAATCGGCTCAGAGC

rJMSF010A05+          TTCAGACGCTCTTTGTTCCTCGGCTATGACTAGCAGTTTGGCTTTCAATCGGCTCAGAGC

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consensus             TTCAGACGCTCTTTGTTCCTCGGCTATGACTAGCAGTTTGGCTTTCAATCGGCTCAGAGC



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rJMFF048M09+          CTTTATCTTGTTCGCTAGTTGTGTTCTCTCTTCTG                         

rJMSF049P23+          CTTTATCTTGTTCGCTAGTTGTGTTCTCTCTTCTGTACAACGGACGGCTACACCAGTGGG

rJMSF014A03+          CTTTATCTTGTTCGCTAGTTGTGTTCTCTCTTCTGTACAACGGACGGCTACACCAGTGGG

rJMSF010A05+          CTTTATCTTGTTCGCTAGTTGTGTTCTCTCTTCTGTACAACGGACGGCTACACCAGTGGG

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consensus             CTTTATCTTGTTCGCTAGTTGTGTTCTCTCTTCTGTACAACGGACGGCTACACCAGTGGG



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rJMSF049P23+          GATATGTGTAATGCGCACTGCTGTTTCAACCTTGTTAACATTTTGACCTCCTTTCCCGCC

rJMSF014A03+          GATATGTGTAATGCGCACTGCTGTTTCAACCTTGTTAACATTTTGACCTCCTTTCCCGCC

rJMSF010A05+          GATATGTGTAATGCGCACTGCTGTTTCAACCTTGTTAACATTTTGACCTCCTTTCCCGCC

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consensus             GATATGTGTAATGCGCACTGCTGTTTCAACCTTGTTAACATTTTGACCTCCTTTCCCGCC



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rJMSF049P23+          TGCTCTGGTAAAACTGATATCCAAGTCTTCATCTGGTATTTCGACATCTGTTGAGTC   

rJMSF014A03+          TGCTCTGGTAAAACTGATATCCAAGTCTTCATCTGGTATTTCGACATCTGTTGAGTCCTC

rJMSF010A05+          TGCTCTGGTAAAACTGATATCCAAGTCTTCATCTGGTATTTCGACATCTGTTGAGTCCTC

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consensus             TGCTCTGGTAAAACTGATATCCAAGTCTTCATCTGGTATTTCGACATCTGTTGAGTCCTC



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rJMSF014A03+          GGGAAGAAGAGGCATGACCTCGACACCAGAGAAGCTTGTCTGGCGAAGGCCTTTAGCATT

rJMSF010A05+          GGGAAGAAGAGGCATGACCTCGACACCAGAGAAGCTTGTCTGGCGAAGGCCTTTAGCATT

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consensus             GGGAAGAAGAGGCATGACCTCGACACCAGAGAAGCTTGTCTGGCGAAGGCCTTTAGCATT



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rJMSF014A03+          GAAAGGAGATTGTCGCACAATTCTATGGGTTCCTTTCTCTCCAGATAAATAACCATATGC

rJMSF010A05+          GAAAGGAGATTGTCGCACAATTCTATGGGTTCCTTTCTCTCCAGATAAATAACCATATGC

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consensus             GAAAGGAGATTGTCGCACAATTCTATGGGTTCCTTTCTCTCCAGATAAATAACCATATGC



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rJMSF014A03+          ATATCGACCTTCAACTTCAACTGTAGCTGANTTAATCCC                     

rJMSF010A05+          ATATCGACCTTCANCTTCAACTGTAGCTGATTTAATCCCAGCCTCTTCTCCAGGAGACTT

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consensus             ATATCGACCTTCAACTTCAACTGTAGCTGATTTAATCCCAGCCTCTTCTCCAGGAGACTT



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rJMSF010A05+          CTCAACTACTTTGGTTCTGTACNGCTGCTTCTCTCCCCATCTCACATA

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consensus             CTCAACTACTTTGGTTCTGTACNGCTGCTTCTCTCCCCATCTCACATA