Alignment Contig 4148

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF048M09+ ACCCTGGAGAGTTTTTTTTTTTTTTTTAGTAAGTAAAATGCAATTGACATAAGTTTTTCT
rJMSF049P23+ TTTTTCT
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consensus ACCCTGGAGAGTTTTTTTTTTTTTTTTAGTAAGTAAAATGCAATTGACATAAGTTTTTCT

. : . : . : . : . : . :
rJMFF048M09+ TTTGAGAACATCGATCAAAGGGGTCAGGTCGTGAGTGGGTGAAATCTCACCATGAACACA
rJMSF049P23+ TTTGAGAACATCGATCAAAGGGGTCAGGTCGTGAGTGGGTGAAATCTCACCATGAACACA
rJMSF014A03+ GAACACA
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consensus TTTGAGAACATCGATCAAAGGGGTCAGGTCGTGAGTGGGTGAAATCTCACCATGAACACA

. : . : . : . : . : . :
rJMFF048M09+ CAACAAATGGCAGATTTCCCTATTATATATAAATTGTTATTTCATCACACTGCAATTGAT
rJMSF049P23+ CAACAAATGGCAGATTTCCCTATTATATATAAATTGTTATTTCATCACACTGCAATTGAT
rJMSF014A03+ CAACAAATGGCAGATTTCCCTATTATATATAAATTGTTATTTCATCACACTGCAATTGAT
rJMSF010A05+ GCAATTGAT
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consensus CAACAAATGGCAGATTTCCCTATTATATATAAATTGTTATTTCATCACACTGCAATTGAT

. : . : . : . : . : . :
rJMFF048M09+ TGATACACCAAAACTTCCATGGCATCCCCATTTTGGTGGATTTTTGGGGAGTACTAATGA
rJMSF049P23+ TGATACACCAAAACTTCCATGGCATCCCCATTTTGGTGGATTTTTGGGGAGTACTAATGA
rJMSF014A03+ TGATACACCAAAACTTCCATGGCATCCCCATTTTGGTGGATTTTTGGGGAGTACTAATGA
rJMSF010A05+ TGATACACCAAAACTTCCATGGCATCCCCATTTTGGTGGATTTTTGGGGAGTACTAATGA
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consensus TGATACACCAAAACTTCCATGGCATCCCCATTTTGGTGGATTTTTGGGGAGTACTAATGA

. : . : . : . : . : . :
rJMFF048M09+ CTGATGAGACTACTCAACTTTGCACAGAATCTATTCTCCACCAGAGGACATTGACATGCT
rJMSF049P23+ CTGATGAGACTACTCAACTTTGCACAGAATCTATTCTCCACCAGAGGACATTGACATGCT
rJMSF014A03+ CTGATGAGACTACTCAACTTTGCACAGAATCTATTCTCCACCAGAGGACATTGACATGCT
rJMSF010A05+ CTGATGAGACTACTCAACTTTGCACAGAATCTATTCTCCACCAGAGGACATTGACATGCT
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consensus CTGATGAGACTACTCAACTTTGCACAGAATCTATTCTCCACCAGAGGACATTGACATGCT

. : . : . : . : . : . :
rJMFF048M09+ GTACTTGTACTTGAGGAAGGATCTAATGAAGGGATCTAGCTCCCCATCCATTACAGAAGT
rJMSF049P23+ GTACTTGTACTTGAGGAAGGATCTAATGAAGGGATCTAGCTCCCCATCCATTACAGAAGT
rJMSF014A03+ GTACTTGTACTTGAGGAAGGATCTAATGAAGGGATCTAGCTCCCCATCCATTACAGAAGT
rJMSF010A05+ GTACTTGTACTTGAGGAAGGATCTAATGAAGGGATCTAGCTCCCCATCCATTACAGAAGT
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consensus GTACTTGTACTTGAGGAAGGATCTAATGAAGGGATCTAGCTCCCCATCCATTACAGAAGT

. : . : . : . : . : . :
rJMFF048M09+ GATGTCTGAAGTTTCATACCCGGTCCGAACATCTTTCACCAGCTTGTAAGGATGAAACAC
rJMSF049P23+ GATGTCTGAAGTTTCATACCCGGTCCGAACATCTTTCACCAGCTTGTAAGGATGAAACAC
rJMSF014A03+ GATGTCTGAAGTTTCATACCCGGTCCGAACATCTTTCACCAGCTTGTAAGGATGAAACAC
rJMSF010A05+ GATGTCTGAAGTTTCATACCCGGTCCAAACATCTTTCACCAGCTTGTAAGGATGAAACAC
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consensus GATGTCTGAAGTTTCATACCCGGTCCGAACATCTTTCACCAGCTTGTAAGGATGAAACAC

. : . : . : . : . : . :
rJMFF048M09+ GTAGTTCCGTATTTGTTGCCCCCACTCTGCCTTCACCGCATCCCCTCTTATTTGCTTTAT
rJMSF049P23+ GTAGTTCCGTATTTGTTGCCCCCACTCTGCCTTCACCGCATCCCCTCTTATTTGCTTTAT
rJMSF014A03+ GTAGTTCCGTATTTGTTGCCCCCACTCTGCCTTCACCGCATCCCCTCTTATTTGCTTTAT
rJMSF010A05+ GTAGTTCCGTATTTGTTGCCCCCACTCTGCCTTCACCGCATCCCCTCTTATTTGCTTTAT
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consensus GTAGTTCCGTATTTGTTGCCCCCACTCTGCCTTCACCGCATCCCCTCTTATTTGCTTTAT

. : . : . : . : . : . :
rJMFF048M09+ TTCAGACGCTCTTTGTTCCTCGGCTATGACTAGCAGTTTGGCTTTCAATCGGCTCAGAGC
rJMSF049P23+ TTCAGACGCTCTTTGTTCCTCGGCTATGACTAGCAGTTTGGCTTTCAATCGGCTCAGAGC
rJMSF014A03+ TTCAGACGCTCTTTGTTCCTCGGCTATGACTAGCAGTTTGGCTTTCAATCGGCTCAGAGC
rJMSF010A05+ TTCAGACGCTCTTTGTTCCTCGGCTATGACTAGCAGTTTGGCTTTCAATCGGCTCAGAGC
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consensus TTCAGACGCTCTTTGTTCCTCGGCTATGACTAGCAGTTTGGCTTTCAATCGGCTCAGAGC

. : . : . : . : . : . :
rJMFF048M09+ CTTTATCTTGTTCGCTAGTTGTGTTCTCTCTTCTG
rJMSF049P23+ CTTTATCTTGTTCGCTAGTTGTGTTCTCTCTTCTGTACAACGGACGGCTACACCAGTGGG
rJMSF014A03+ CTTTATCTTGTTCGCTAGTTGTGTTCTCTCTTCTGTACAACGGACGGCTACACCAGTGGG
rJMSF010A05+ CTTTATCTTGTTCGCTAGTTGTGTTCTCTCTTCTGTACAACGGACGGCTACACCAGTGGG
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consensus CTTTATCTTGTTCGCTAGTTGTGTTCTCTCTTCTGTACAACGGACGGCTACACCAGTGGG

. : . : . : . : . : . :
rJMSF049P23+ GATATGTGTAATGCGCACTGCTGTTTCAACCTTGTTAACATTTTGACCTCCTTTCCCGCC
rJMSF014A03+ GATATGTGTAATGCGCACTGCTGTTTCAACCTTGTTAACATTTTGACCTCCTTTCCCGCC
rJMSF010A05+ GATATGTGTAATGCGCACTGCTGTTTCAACCTTGTTAACATTTTGACCTCCTTTCCCGCC
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consensus GATATGTGTAATGCGCACTGCTGTTTCAACCTTGTTAACATTTTGACCTCCTTTCCCGCC

. : . : . : . : . : . :
rJMSF049P23+ TGCTCTGGTAAAACTGATATCCAAGTCTTCATCTGGTATTTCGACATCTGTTGAGTC
rJMSF014A03+ TGCTCTGGTAAAACTGATATCCAAGTCTTCATCTGGTATTTCGACATCTGTTGAGTCCTC
rJMSF010A05+ TGCTCTGGTAAAACTGATATCCAAGTCTTCATCTGGTATTTCGACATCTGTTGAGTCCTC
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consensus TGCTCTGGTAAAACTGATATCCAAGTCTTCATCTGGTATTTCGACATCTGTTGAGTCCTC

. : . : . : . : . : . :
rJMSF014A03+ GGGAAGAAGAGGCATGACCTCGACACCAGAGAAGCTTGTCTGGCGAAGGCCTTTAGCATT
rJMSF010A05+ GGGAAGAAGAGGCATGACCTCGACACCAGAGAAGCTTGTCTGGCGAAGGCCTTTAGCATT
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consensus GGGAAGAAGAGGCATGACCTCGACACCAGAGAAGCTTGTCTGGCGAAGGCCTTTAGCATT

. : . : . : . : . : . :
rJMSF014A03+ GAAAGGAGATTGTCGCACAATTCTATGGGTTCCTTTCTCTCCAGATAAATAACCATATGC
rJMSF010A05+ GAAAGGAGATTGTCGCACAATTCTATGGGTTCCTTTCTCTCCAGATAAATAACCATATGC
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consensus GAAAGGAGATTGTCGCACAATTCTATGGGTTCCTTTCTCTCCAGATAAATAACCATATGC

. : . : . : . : . : . :
rJMSF014A03+ ATATCGACCTTCAACTTCAACTGTAGCTGANTTAATCCC
rJMSF010A05+ ATATCGACCTTCANCTTCAACTGTAGCTGATTTAATCCCAGCCTCTTCTCCAGGAGACTT
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consensus ATATCGACCTTCAACTTCAACTGTAGCTGATTTAATCCCAGCCTCTTCTCCAGGAGACTT

. : . : . : . : . : . :
rJMSF010A05+ CTCAACTACTTTGGTTCTGTACNGCTGCTTCTCTCCCCATCTCACATA
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consensus CTCAACTACTTTGGTTCTGTACNGCTGCTTCTCTCCCCATCTCACATA