Alignment Contig 4132

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF046D07+ AAACCGCCATTCTGATTTCTGAATTCCATTAAAAAAACAAAAATTTGTACTACAAACTTG
rJMSF037A15+ AAAATTTGTACTACAAACTTG
rJMSF016C23+ AAAATTTGTACTACAAACTTG
rJMSF045L04+ AAAATTTGTACTACAAACTTG
____________________________________________________________
consensus AAACCGCCATTCTGATTTCTGAATTCCATTAAAAAAACAAAAATTTGTACTACAAACTTG

. : . : . : . : . : . :
rJMFF046D07+ AAATGATAATACAATGCCCAACATGGCGAAAGGAAACAAATCTCCTGCAAAACCGACAGG
rJMSF037A15+ AAATGATAATACAATGCCCAACATGGCGAAAGGAAACAGATCTCCTGCAAAACCGACAGG
rJMSF016C23+ AAATGATAATACAATGCCCAACATGGCGAAAGGAAACAGATCTCCTGCAAAACCGACAGG
rJMSF045L04+ AAATGATAATACAATGCCCAACATGGCGAAAGGAAACAGATCTCCTGCAAAACCGACAGG
____________________________________________________________
consensus AAATGATAATACAATGCCCAACATGGCGAAAGGAAACAGATCTCCTGCAAAACCGACAGG

. : . : . : . : . : . :
rJMFF046D07+ TCGGTCTATTAACAAAAATTAAGGCTCTAATACTCCCCCAAAAACATCTTGCTCACTGAT
rJMSF037A15+ TCGGTCTATTAGCAGAAATTAAGGCTCTAATACTCCACCAAAAACATCTTGCTCACTGAT
rJMSF016C23+ TCGGTCTATTAGCAGAAATTAAGGCTCTAATACTCCACCAAAAACATCTTGCTCACTGAT
rJMSF045L04+ TCGGTCTATTAGCAGAAATTAAGGCTCTAATACTCCACCAAAAACATCTTGCTCACTGAT
____________________________________________________________
consensus TCGGTCTATTAGCAGAAATTAAGGCTCTAATACTCCACCAAAAACATCTTGCTCACTGAT

. : . : . : . : . : . :
rJMFF046D07+ TTTTCCGAGCCTTGGATCTCGCAGGTTTTGCTGGTTTAAAGATGTTCCCAAGCATGATCA
rJMSF037A15+ CTTTCCGAGCCTTGGATCTCGCAGGTTTTGCTGGTTTAATGATGTTCCCGAGCATGATCA
rJMSF016C23+ CTTTCCGAGCCTTGGATCTCGCAGGTTTTGCTGGTTTAATGATGTTCCCGAGCATGATCA
rJMSF045L04+ CTTTCCGAGCCTTGGATCTCGCAGGTTTTGCTGGTTTAATGATGTTCCCGAGCATGATCA
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consensus CTTTCCGAGCCTTGGATCTCGCAGGTTTTGCTGGTTTAATGATGTTCCCGAGCATGATCA

. : . : . : . : . : . :
rJMFF046D07+ ACACAACCGGCACAATCGTTCCAACATAAAACACCCTCCCGTATGC
rJMSF037A15+ ACACAACCGGCACAATCGTTCCAACATAGTACACGCTCCCGTATGCAGCAAGTGTTTCAT
rJMSF016C23+ ACACAACCGGCACAATCGTTCCAACATAGTACACGCTCCCGTATGCAGCAAGTGTTTCAT
rJMSF045L04+ ACACAACCGGCACAATCGTTCCAACATAGTACACGCTCCCGTATGCAGCAAGTGTTTCAT
____________________________________________________________
consensus ACACAACCGGCACAATCGTTCCAACATAGTACACGCTCCCGTATGCAGCAAGTGTTTCAT

. : . : . : . : . : . :
rJMSF037A15+ GGAGACTCAATACCAAGAAACCAACACACGAGTAGTTGAGAACCAAAAGGGTGTAAGCGA
rJMSF016C23+ GGAGACTCAATACCAAGAAACCAACACACGAGTAGTTGAGAACCAAAAGGGTGTAAGCGA
rJMSF045L04+ GGAGACTCAATACCAAGAAACCAACACACGAGTAGTTGAGAACCAAAAGGGTGTAAGCGA
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consensus GGAGACTCAATACCAAGAAACCAACACACGAGTAGTTGAGAACCAAAAGGGTGTAAGCGA

. : . : . : . : . : . :
rJMSF037A15+ AGTTCATCAATGCTAGGATCTTCTTAAGGATAGCATTTCCAGTACCTTGCTGCCATCTGT
rJMSF016C23+ AGTTCATCAATGCTAGGATCTTCTTAAGGATAGCATTTCCAGTACCTTGCTGCCATCTGT
rJMSF045L04+ AGTTCATCAATGCTAGGATCTTCTTAAGGATAGCATTTCCAGTACCTTGCTGCCATCTGT
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consensus AGTTCATCAATGCTAGGATCTTCTTAAGGATAGCATTTCCAGTACCTTGCTGCCATCTGT

. : . : . : . : . : . :
rJMSF037A15+ AAATGGCTCTTGAACCGGCAATCATCAGAGCGGATTGTACAAAGAAAATCATATACCCGG
rJMSF016C23+ AAATGGCTCTTGAACCGGCAATCATCAGAGCGGATTGTACAAAGAAAATCATATACCCGG
rJMSF045L04+ AAATGGCTCTTGAACCGGCAATCATCAGAGCGGATTGTACAAAGAAAATCATATACCCGG
____________________________________________________________
consensus AAATGGCTCTTGAACCGGCAATCATCAGAGCGGATTGTACAAAGAAAATCATATACCCGG

. : . : . : . : . : . :
rJMSF037A15+ GATATAAGCCATGCCATACAGCACTGACAGTCTGCGTTGCCAGTAACTGGAAGAAACCAG
rJMSF016C23+ GATATAAGCCATGCCATACAGCACTGACAGTCTGCGTTGCCAGTAACTGGAAGAAACCAG
rJMSF045L04+ GATATAAGCCATGCCATACAGCACTGACAGTCTGCGTTGCCAGTAACTGGAAGAAACCAG
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consensus GATATAAGCCATGCCATACAGCACTGACAGTCTGCGTTGCCAGTAACTGGAAGAAACCAG

. : . : . : . : . : . :
rJMSF037A15+ GTTTCTTGCCCTTGCTGATAAGCCTCTCATAAACATAATGGCGTAGCCAGGTGCTGACTT
rJMSF016C23+ GTTTCTTGCCCTTGCTGATAAGCCTCTCATAAACATAATGGCGTAGCCAGGTGCTGACTT
rJMSF045L04+ GTTTCTTGCCCTTGCTGATAAGCCTCTCATAAACATAATGGCGTAGCCAGGTGCTGACTT
____________________________________________________________
consensus GTTTCTTGCCCTTGCTGATAAGCCTCTCATAAACATAATGGCGTAGCCAGGTGCTGACTT

. : . : . : . : . : . :
rJMSF037A15+ GTATGTTCCATACAAGAGGCAACTGAACCGAACTCTTTGCCAACTCTACACCCAATATGT
rJMSF016C23+ GTATGTTCCATACAAGAGGCAACTGAACCGAACTCTTTGCCAACTCTACACCCAATATGT
rJMSF045L04+ GTATGTTCCATACAAGAGGCAACTGAACCGAACTCTTTGCCAACTCTACACCCAATATGT
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consensus GTATGTTCCATACAAGAGGCAACTGAACCGAACTCTTTGCCAACTCTACACCCAATATGT

. : . : . : . : . : . :
rJMSF037A15+ CAACGTTTTTTGCACGGTCCCACAGTGGTTTTGGGGGAGAAGACTCGGTCCAACCACTGA
rJMSF016C23+ CAACGTTTTTTGCACGGTCCCACAGTGGTTTTGGGGGAGAAGACTCGGTCCAACCACTGA
rJMSF045L04+ CAACGTTTTTTGCACGGTCCCACAGTGGTTTTGGGGGAGAAGACTCGGTCCAACCACTGA
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consensus CAACGTTTTTTGCACGGTCCCACAGTGGTTTTGGGGGAGAAGACTCGGTCCAACCACTGA

. : . : . : . : . : . :
rJMSF037A15+ A
rJMSF016C23+ A
rJMSF045L04+ AACCCAGGCCAGAAATGATAATAGAGGCTTCTGAGATTGACCAGATNAAATAATATTTCC
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consensus AACCCAGGCCAGAAATGATAATAGAGGCTTCTGAGATTGACCAGATNAAATAATATTTCC

. : . : . : . : . : . :
rJMSF045L04+ NA
____________________________________________________________
consensus NA