Alignment Contig 4109

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF043L03+ TTTTTTTTTTTTTTTTAGGCCCAAACAAATATTATTAACATTGCTAAAATACTATTTTAC
rJMFF044F21+ GGCCCAAACAAATATTATTAACATTGCTAAAATACTATTTTAC
rJMFF044G11+ GGCCCAAACAAATATTATTAACATTGCTAAAATACTATTTTAC
____________________________________________________________
consensus TTTTTTTTTTTTTTTTAGGCCCAAACAAATATTATTAACATTGCTAAAATACTATTTTAC

. : . : . : . : . : . :
rJMFF043L03+ AATGTTATATAAAAAAAAAAAAAATTGAAATTTCCTTCACTTTATTTACTTATTAAATTT
rJMFF044F21+ AATGTTATATAAAAAAAAAAAAAATTGAAATTTCCTTCACTTTATTTACTTATTAAATTT
rJMFF044G11+ AATGTTATATAAAAAAAAAAAAAATTGAAATTTCCTTCACTTTATTTACTTATTAAATTT
rJMFF043P18+ CCTTCACTTTATTTACTTATTAAATTT
____________________________________________________________
consensus AATGTTATATAAAAAAAAAAAAAATTGAAATTTCCTTCACTTTATTTACTTATTAAATTT

. : . : . : . : . : . :
rJMFF043L03+ TAAATTAAAATAATGCTGGACTTATCTAAAAGGCTAAAAGAATAGCCACAAAGAGAAAAG
rJMFF044F21+ TAAATTAAAATAATGCTGGACTTATCTAAAAGGCTAAAAAAATAGCCA
rJMFF044G11+ TAAATTAAAATAATGCTGGACTTATCTAAAAGGCTAAAAGAATAGCCA-AAAGAGAAAAG
rJMFF043P18+ TAAATTAAAATAATGCTGGACTTATCTAAAAGGCTAAAAGAATAGCCA-AAAGAGAAAAG
____________________________________________________________
consensus TAAATTAAAATAATGCTGGACTTATCTAAAAGGCTAAAAGAATAGCCA-AAAGAGAAAAG

. : . : . : . : . : . :
rJMFF043L03+ CAGAATAATTTAAAAGACATATTTAAGCACTTAGTTGGACCCACCGTGCCACGCTCGGCA
rJMFF044G11+ CAGAATAATTTAAAAGACATATTTAAGCACTTAGTTGGACCCACCGTGCCACGCTCGGCA
rJMFF043P18+ CAGAATAATTTAAAAGACATATTTAAGCACTTAGTTGGACCCACCGTGCCACGCTCGGCA
____________________________________________________________
consensus CAGAATAATTTAAAAGACATATTTAAGCACTTAGTTGGACCCACCGTGCCACGCTCGGCA

. : . : . : . : . : . :
rJMFF043L03+ CCCCTTGGTTTACAGCGAAAACCATGTAATAACCCGGCGGCGCCACCATCGCATTCGGCG
rJMFF044G11+ CCCCTTGGTTTACAGCGAAAACCATGTAATAACCCGGCGGCGCCACCATCGCATTCGGCG
rJMFF043P18+ CCCCTTGGTTTACAGCGAAAACCATGTAATAACCCGGCGGCGCCACCATCGCATTCGGCG
____________________________________________________________
consensus CCCCTTGGTTTACAGCGAAAACCATGTAATAACCCGGCGGCGCCACCATCGCATTCGGCG

. : . : . : . : . : . :
rJMFF043L03+ GCGCGGTACAACCTATACGGTATTTCCCGGTGCCATCAGGGATAGCACTCGTCACCGGTA
rJMFF044G11+ GCGCGGTACAACCTATACGGTATTTCCCGGTGCCATCAGGGATAGCACTCGTCACCGGTA
rJMFF043P18+ GCGCGGTACAACCTATACGGTATTTCCCGGTGCCATCAGGGATAGCACTCGTCACCGGTA
____________________________________________________________
consensus GCGCGGTACAACCTATACGGTATTTCCCGGTGCCATCAGGGATAGCACTCGTCACCGGTA

. : . : . : . : . : . :
rJMFF043L03+ GCTTTACCAGCCTCTGGCCTTGAGAAAACGAGTGGGTGGAGAATGGGGCGCTGGCGAAAT
rJMFF044G11+ GCTTTACCAGCCTCTGGCCTTGAGAAAACGAGTGGGTGGAGAATGGGGCGCTGGCGAAAT
rJMFF043P18+ GCTTTACCAGCCTCTGGCCTTGAGAAAACGAGTGGGTGGAGAATGGGGCGCTGGCGAAAT
____________________________________________________________
consensus GCTTTACCAGCCTCTGGCCTTGAGAAAACGAGTGGGTGGAGAATGGGGCGCTGGCGAAAT

. : . : . : . : . : . :
rJMFF043L03+ TCACCTCTACCACCCCGACTACCGGCAGTTCCACCGTGATCGCCGCCTCGAAAGCCTGCC
rJMFF044G11+ TCACCTCTACCACCCCGACTACCGGCAGTTCCACCGTGATCGCCGCCTCGAAAGCCTGCC
rJMFF043P18+ TCACCTCTACCACCCCGACTACCGGCAGTTCCACCGTGATCGCCGCCTCGAAAGCCTGCC
____________________________________________________________
consensus TCACCTCTACCACCCCGACTACCGGCAGTTCCACCGTGATCGCCGCCTCGAAAGCCTGCC

. : . : . : . : . : . :
rJMFF043L03+ GGTACCCAACCTTCTCCGGCAACTCTACTAGAACAGGCCGAATGTTAGCCCTGTCAGCCG
rJMFF044G11+ GGTACCCAACCTTCTCCGGCAACTCTACTAGAACAGGCCGAATGTTAGCCCTGTCAGCCG
rJMFF043P18+ GGTACCCAACCTTCTCCGGCAACTCTACTAGAACAGGCCGAATGTTAGCCCTGTCAGCCG
____________________________________________________________
consensus GGTACCCAACCTTCTCCGGCAACTCTACTAGAACAGGCCGAATGTTAGCCCTGTCAGCCG

. : . : . : . : . : . :
rJMFF043L03+ ACAAGTACTCCGGCGAAAACGCTTCGATCGACAGCTGTGTTGGGAATGGGCC
rJMFF044G11+ ACAAGTACTCCGGCGAAAACGCTTCGATCGACAGCTGTGTTGGGAATGGGCCTCTGTATT
rJMFF043P18+ ACAAGTACTCCGGCGAAAACGCTTCGATCGACAGCTGTGTTGGGAATGGGCCTCTGTATT
____________________________________________________________
consensus ACAAGTACTCCGGCGAAAACGCTTCGATCGACAGCTGTGTTGGGAATGGGCCTCTGTATT

. : . : . : . : . : . :
rJMFF044G11+ TGTAGAAGTAATGCGGATTACTTCCGG
rJMFF043P18+ TGTAGAAGTAATGCGGATTACTTCCGGCCAGTAAAACCCTACCGTCCGGCA
____________________________________________________________
consensus TGTAGAAGTAATGCGGATTACTTCCGGCCAGTAAAACCCTACCGTCCGGCA