Alignment Contig 4080

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF038C23+ TTGTTTNNAATTCCACCATTTGACATTCAATCTCAATAGTACATTCAAATTCCTTAAACC
rJMFF027E11+ TGACATTCAATCTCAACAGTACATTCAAATTCCTTAAACC
rJMFF030B08+ AATTCCTTAAACC
rJMFF011A01+ TGACATTCAATCTCAATAGTACATTCAAATTCCTTAAACC
rJMFF024N14+ TTCAATCTCAACAGTACATTCAAATTCCTTAAACC
rJMSF044E20+ ACAGTACATTCAAATTCCTTAAACC
____________________________________________________________
consensus TTGTTTNNAATTCCACCATTTGACATTCAATCTCAACAGTACATTCAAATTCCTTAAACC

. : . : . : . : . : . :
rJMFF038C23+ ACATGATGTTACAACTACAGGTCATACAAAGACAGGATACATGGTACACCACAAGTTGAA
rJMFF027E11+ ACATGATGTTACAACTACAGGTCATACAAAGACAGGATACATGGTACACCACAAGTTGAA
rJMFF030B08+ ACATGATGTTACAACTACAGGTCATACAAAGACAGGATACATGGTACACCACAAGTTGAA
rJMFF011A01+ ACATGATGTTACAACTACAGGTCATACAAAGACAGGATACATGGTACACCACAAGTTGAA
rJMFF024N14+ ACATGATGTTACAACTACAGGTCATACAAAGACAGGATACATGGTACACCACAAGTTGAA
rJMSF044E20+ ACATGATGTTACAACTACAGGTCATACAAAGACAGGATACATGGTACACCACAAGTTGAA
____________________________________________________________
consensus ACATGATGTTACAACTACAGGTCATACAAAGACAGGATACATGGTACACCACAAGTTGAA

. : . : . : . : . : . :
rJMFF038C23+ GCCGAGGCGATTGTTGAACGCATTTCCTTACATCTGCGCTTTTTCGAGACAAGGCAATAC
rJMFF027E11+ GCCGAGGCGATTGTTGAACGCATTTCCTTACATCTGCGCTTTTTCGAGACAAGGCAATAC
rJMFF030B08+ GCCGAGGCGATTGTTGAACGCATTTCCTTACATCTGCGCTTTTTCGAGACAAGGCAATAC
rJMFF011A01+ GCCGAGGCGATTGTTGAACGCATTTCCTTACATCTGCGCTTTTTCGAGACAAGGCAATAC
rJMFF024N14+ GCCGAGGCGATTGTTGAACGCATTTCCTTACATCTGCGCTTTTTCGAGACAAGGCAATAC
rJMSF044E20+ GCCGAGGCGATTGTTGAACGCATTTCCTTACATCTGCGCTTTTTCGAGACAAGGCAATAC
____________________________________________________________
consensus GCCGAGGCGATTGTTGAACGCATTTCCTTACATCTGCGCTTTTTCGAGACAAGGCAATAC

. : . : . : . : . : . :
rJMFF038C23+ AAAGATACATACGAAAATAATGGTTACAGACAGGAGAAAAAGAGCTTCGAAAGGAACGCT
rJMFF027E11+ AAAGATACATACGAAAATAATGGTTACAGACAGGAGAAAAAGAGCTTCGAAAGGAACGCT
rJMFF030B08+ AAAGATACATACGAAAATAATGGTTACAGACAGGAGAAAAAGAGCTTCGAAAGGAACGCT
rJMFF011A01+ AAAGATACATACGAAAATAATGGTTACAGACAGGAGAAAAAGAGCTTCGAAAGGAACGCT
rJMFF024N14+ AAAGATACATACGAAAATAATGGTTACAGACAGGAGAAAAAGAGCTTCGAAAGGAACGCT
rJMSF044E20+ AAAGATACATACGAAAATAATGGTTACAGACAGGAGAAAAAGAGCTTCGAAAGGAACGCT
____________________________________________________________
consensus AAAGATACATACGAAAATAATGGTTACAGACAGGAGAAAAAGAGCTTCGAAAGGAACGCT

. : . : . : . : . : . :
rJMFF038C23+ TGATTCATCATTTATCTGTCGTGCTCTTCAGGAATCACAATCCCAGGAAGGGGCATTGTT
rJMFF027E11+ TGATTCATCATTTATCTGTCGTGCTCTTCAGGAATCACAATCCCAGGAAGGGGCATTGTT
rJMFF030B08+ TGATTCATCATTTATCTGTCGTGCTCTTCAGGAATCACAATCCCAGGAAGGGGCATTGTT
rJMFF011A01+ TGATTCATCATTTATCTGTCGTGCTCTTCAGGAATCACAATCCCAGGAAGGGGCATTGTT
rJMFF024N14+ TGATTCATCATTTATCTGTCGTGCTCTTCAGGAATCACAATCCCAGGAAGGGGCATTGTT
rJMSF044E20+ TGATTCATCATTTATCTGT---GCTCTTCAGGAATCACAATCCCAGGAAGGGGCATTGTT
____________________________________________________________
consensus TGATTCATCATTTATCTGTCGTGCTCTTCAGGAATCACAATCCCAGGAAGGGGCATTGTT

. : . : . : . : . : . :
rJMFF038C23+ TTCTCGCGTGCTCAGGAACCAATTTCA---TGGTTTCCGTTGGCACACCCTTCAACTCGT
rJMFF027E11+ TTCTCGCGTGCTCAGGAACCAATTTCATTATGGTTTCCGTTGGCACACCCTTCAACTCGT
rJMFF030B08+ TTCTCGCGTGCTCAGGAACCAATTTCATTATGGTTTCCGTTGGCACACCCTTCAACTCGT
rJMFF011A01+ TTCTCGCGTGCTCAGGAACCAATTTCA---TGGTTTCCGTTGGCACACCCTTCAACTCGT
rJMFF024N14+ TTCTCGCGTGCTCAGGAACCAATTTCATTATGGTTTCCGTTGGCACACCCTTCAACTCGT
rJMSF044E20+ TTCTCGCGTGCTCAGGAACCAATTTCATTATGGTTTCCGTTGGCACACCCTTCAACTCGT
____________________________________________________________
consensus TTCTCGCGTGCTCAGGAACCAATTTCATTATGGTTTCCGTTGGCACACCCTTCAACTCGT

. : . : . : . : . : . :
rJMFF038C23+ GTGGCTTAAAGTTGAACAGCGGTGGAACAAAGCGTCCATTTGGGAGGCGAATGCTGGGGT
rJMFF027E11+ GTGGCTTAAAGTTGAACAGCGGTGGAACAAAGCGTCCATTTGGGAGGCGAATGCTGGGGT
rJMFF030B08+ GTGGCTTAAAGTTGAACAGCGGTGGAACAAAGCGTCCATTTGGGAGGCGAATGCTGGGGT
rJMFF011A01+ GTGGCTTAAAGTTGAACAGCGGTGGAACAAAGCGTCCATTTGGGAGGCGAATGCTGGGGT
rJMFF024N14+ GTGGCTTAAAGTTGAACAGCGGTGGAACAAAGCGTCCATTTGGGAGGCGAATGCTGGGGT
rJMSF044E20+ GTGGCTTAAAGTTGAACAGCGGTGGAACAAAGCGTCCATTTGGGAGGCGAATGCTGGGGT
____________________________________________________________
consensus GTGGCTTAAAGTTGAACAGCGGTGGAACAAAGCGTCCATTTGGGAGGCGAATGCTGGGGT

. : . : . : . : . : . :
rJMFF038C23+ CACGTAGCTCATCGAAGAAAGGATGGGTCAAGGCATCCAAAGCAGAGCAGCGTAAATTTG
rJMFF027E11+ CACGTAGCTCATCGAAGAAAGGATGGGTCAAGGCATCCAAAGCAGAGCAGCGTAAATTTG
rJMFF030B08+ CACGTAGCTCATCGAAGAAAGGATGGGTCAAGGCATCCAAAGCAGAGCAGCGTAAATTTG
rJMFF011A01+ CACGTAGCTCATCGAAGAAAGGATGGGTCAAGGCATCCAAAGCAGAGCAGCGTAAATTTG
rJMFF024N14+ CACGTAGCTCATCGAAGAAAGGATGGGTCAAGGCATCCAAAGCAGAGCAGCGTAAATTTG
rJMFF017P10+ CGTAAATTTG
rJMSF044E20+ CACGTAGCTCATCGAAGAAAGGATGGGTCAAGGCATCCAAAGCAGAGCAGCGTAAATTTG
____________________________________________________________
consensus CACGTAGCTCATCGAAGAAAGGATGGGTCAAGGCATCCAAAGCAGAGCAGCGTAAATTTG

. : . : . : . : . : . :
rJMFF038C23+ GAGAGTACTGCAGAAGCCTAGAAACCAGGTCAACTGCTTCTGGTGGCATACGCTTATGAA
rJMFF027E11+ GAGAGTACTGCAGAAGCCTAGAAACCAGGTCAACTGCTTCTGGTGGCATACGCTTATGAA
rJMFF030B08+ GAGAGTACTGCAGAAGCCTAGAAACCAGGTCAACTGCTTCTGGTGGCATACGCTTATGAA
rJMFF011A01+ GAGAGTACTGCAGAAGCCTAGAAACCAGGTCAACTGCTTCTGGTGGCATACGCTTATGAA
rJMFF024N14+ GAGAGTACTGCAGAAGCCTAGAAACCAGGTCAACTGCTTCTGGTGGCATACGCTTATGAA
rJMFF017P10+ GAGAGTACTGCAGAAGCCTACAAACCAGGTCAACTGCTTCTGGTGGCATACGCTTATGAA
rJMSF044E20+ GAGAGTACTGCAGAAGCCTAGAAACCAGGTCAACTGCTTCTGGTGGCATACGCTTATGAA
____________________________________________________________
consensus GAGAGTACTGCAGAAGCCTAGAAACCAGGTCAACTGCTTCTGGTGGCATACGCTTATGAA

. : . : . : . : . : . :
rJMFF038C23+ ATATCTTGTGCCATGGATGAGCTTTAATTTGCGGGAATTTGAACTCTGTATAGTTTGGAT
rJMFF027E11+ ATATCTTGTGCCATGGATGAGCTTTAATTTGCGGGAATTTGAACTCTGTATAGTTTGGAT
rJMFF030B08+ ATATCTTGTGCCATGGATGAGCTTTAATTTGCGGGAATTTGAACTCTGTATAGTTTGGAT
rJMFF011A01+ ATATCTTGTGCCATGGATGAGCTTTAATTTGCGGGAATTTGAACTCTGTATAGTTTGGAT
rJMFF024N14+ ATATCTTGTGCCATGGATGAGCTTTAATTTGCGGGAATTTGAACTCTGTATAGTTTGGAT
rJMFF017P10+ ATATCTTGTGCCATGGATGAGCTTTAATTTGCGGGAATTTGAACTCTGTATAGTTTGGAT
rJMSF044E20+ ATATCTTGTGCCATGGATGAGCTTTAATTTGCGGGAATTTGAACTCTGTATAGTTTGGAT
____________________________________________________________
consensus ATATCTTGTGCCATGGATGAGCTTTAATTTGCGGGAATTTGAACTCTGTATAGTTTGGAT

. : . : . : . : . : . :
rJMFF038C23+ TCATGCATTTAATTTCTTCCCTGGTAGGAGTACCCAAGACCTTAATGATCTCTACAAGCT
rJMFF027E11+ TCATGCATTTAATTTCTTCCCTGGTAGGAGTACCCAAGACCTTAATGATCTCTACAAGCT
rJMFF030B08+ TCATGCATTTAATTTCTTCCCTGGTAGGAGTACCCAAGACCTTAATGATCTCTACAAGCT
rJMFF011A01+ TCATGCATTTAATTTCTTCCCTGGTAGGAGTACCCAAGACCTTAATGATCTCTACAAGCT
rJMFF024N14+ TCATGCATTTAATTTCTTCCCTGGTAGGAGTACCCAAGACCTTAATGATCTCTACAAGCT
rJMFF017P10+ TCATGCATTTAATTTCTTCCCTGGTANGAGTACCCAAGACCTTAATGATCTCTACAAGCT
rJMSF044E20+ TCATGCATTTAATTTCTTCCCTGGTAGGAGTACCCAAGACCTTAATGATCTCTACAAGCT
____________________________________________________________
consensus TCATGCATTTAATTTCTTCCCTGGTAGGAGTACCCAAGACCTTAATGATCTCTACAAGCT

. : . : . : . : . : . :
rJMFF038C23+ GGTCAACTCCACTTTCACCANGAAATAGTGTCTGTCCTAG
rJMFF027E11+ GGTCAACTCCACTTTCACCAGGAAATAGTGTCTGTCCTAAAAGCAGTTCAGCAAGGACAC
rJMFF030B08+ GGTCAACTCCACTTTCACCAGGAAATAGTGTCTGTCCTAAAAGCAGTTCAGCAAGGACAC
rJMFF011A01+ GGTCAACTCCACTTTCACCAGGAAATAGTGTCTGTCCTAGAAGCAGTTCAGCAAGGACAC
rJMFF024N14+ GGTCAACTCCACTTTCACCANGAAATAGTGTCTGTCCTAGAAGCAGTTCAGCAAGGACAC
rJMFF017P10+ GGTCAACTCCACTTTCACCANGAAATANTGTCTGTCC
rJMSF044E20+ GGTCAACTCCACTTTCACCAGGAAATAGTGTCTGTCCTAGAAGCAGTTCAGCAAGGACAC
____________________________________________________________
consensus GGTCAACTCCACTTTCACCAGGAAATAGTGTCTGTCCTAGAAGCAGTTCAGCAAGGACAC

. : . : . : . : . : . :
rJMFF027E11+ AACCTGCAGACCAGAC
rJMFF030B08+ AACCTGCAGA
rJMFF011A01+ AACCTGCAGACCAGACATCAATGGCGGTAGTGTACTCTGTCGCTCCAAAAATAAGCTCTG
rJMFF024N14+ AACCTGCAGACCAGACATCAATGGCGGTAGTGTACTCTGT
rJMSF044E20+ AACCTGCAGACCAGACATCAATGGCGGTAGTGTACTCTGTCGCTCCAAAAATAAGCTCTG
____________________________________________________________
consensus AACCTGCAGACCAGACATCAATGGCGGTAGTGTACTCTGTCGCTCCAAAAATAAGCTCTG

. : . : . : . : . : . :
rJMFF011A01+ GAGCTCTATA
rJMSF044E20+ GAGCTCTATAATACCTAGAG
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consensus GAGCTCTATAATACCTAGAG